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Development of reverse optogenetics and its application for analysis of a neural network related to C. elegans locomotion

Research Project

Project/Area Number 17K19452
Research Category

Grant-in-Aid for Challenging Research (Exploratory)

Allocation TypeMulti-year Fund
Research Field Neuroscience and related fields
Research InstitutionKyoto University

Principal Investigator

Wataru Aoki  京都大学, 農学研究科, 助教 (10722184)

Project Period (FY) 2017-06-30 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Fiscal Year 2018: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Fiscal Year 2017: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Keywordsoptogenetics / reverse optogenetics / functional cellomics / C. elegans / neural network / Connectome / Reverse optogenetics
Outline of Final Research Achievements

C. elegans has a simple neural network composed of 302 neurons, and its computation mechanisms have not been well understood. We developed a novel methodology, functional cellomics, for hypothesis-free functional annotation of single neurons on C. elegans behavior. We applied functional cellomics to egg-laying behavior of C. elegans, and succeeded in high-throughput re-annotation of neurons which are important for the egg-laying behavior. Furthermore, we have constructed an automatic worm tracking system, and are analyzing neurons which affect C. elegans locomotion. In the future, functional cellomics will support our understanding on universal computation mechanisms of brains.

Academic Significance and Societal Importance of the Research Achievements

本研究の独創性は、従来の発想を逆転させ、仮説を必要としない網羅的解析法を神経ネットワーク研究に導入することに集約される。本申請は、仮説フリー・ハイスループット・1細胞分解能の方法論を細胞ネットワークレベルの研究に新しく導入するものである。本方法論により、動物の行動を高精度に予測できる神経ネットワークモデルの構築に成功すれば、神経系の普遍的動作原理を理解する上で大きなマイルストーンとなる。

Report

(3 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • Research Products

    (13 results)

All 2019 2018 2017

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (10 results) (of which Int'l Joint Research: 1 results,  Invited: 4 results) Book (2 results)

  • [Journal Article] Cellomics approach for high-throughput functional annotation of Caenorhabditis elegans neural network2018

    • Author(s)
      Aoki Wataru、Matsukura Hidenori、Yamauchi Yuji、Yokoyama Haruki、Hasegawa Koichi、Shinya Ryoji、Ueda Mitsuyoshi
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 1-9

    • DOI

      10.1038/s41598-018-28653-x

    • NAID

      120006489942

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] 神経ネットワーク機能の網羅的解析を目指した バイアスフリーオプトジェネティクスの開発2018

    • Author(s)
      青木 航
    • Organizer
      細胞凝集研究会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] ファンクショナルセロミクスによる神経ネットワークのハイスループットアノテーション2018

    • Author(s)
      山内悠至,松倉秀典,青木航,植田充美
    • Organizer
      生物工学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Cellomics approach for high-throughput functional annotation of Caenorhabditis elegans neural network2018

    • Author(s)
      Wataru Aoki
    • Organizer
      Max Planck Florida Institute-JST(PRESTO) Joint Workshop on Neuroscience and Single Cell Research
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 機能的セロミクスを用いた線虫行動の解析2018

    • Author(s)
      松倉 秀典, 山内 悠至, 横山 治樹, 青木 航, 植田 充美
    • Organizer
      分子生物学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 線虫神経ネットワークのハイスループットアノテーション法の開発2018

    • Author(s)
      山内悠至,松倉秀典,横山治樹,青木 航,植田充美
    • Organizer
      分子生物学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 仮説フリーサイエンスの拡張による生命理解の高速化2018

    • Author(s)
      青木 航
    • Organizer
      第3回生物機能開発研究所講演会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Cellomics approach for high-throughput functional annotation of Caenorhabditis elegans neural network2018

    • Author(s)
      Wataru Aoki
    • Organizer
      12th International workshop on approaches to single cell analysis
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] High-throughput Functional Annotation of the Caenorhabditis elegans Neural Network2017

    • Author(s)
      Wataru AOKI, Haruki YOKOYAMA, Hidenori MATSUKURA, Mitsuyoshi UEDA
    • Organizer
      ASBMB 2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] ニューラルネットワークを網羅的かつハイスループットに解析する新規方法論2017

    • Author(s)
      松倉 秀典, 横山 治樹, 青木 航, 植田 充美
    • Organizer
      生物工学会 2017
    • Related Report
      2017 Research-status Report
  • [Presentation] 神経ネットワークの網羅的解析に向けた“functional cellomics”の開発2017

    • Author(s)
      青木 航, 山内 悠至, 松倉 秀典, 万 沢夫, 橋本 崇志, 油屋 駿介, 植田 充美
    • Organizer
      分子生物学会 2017
    • Related Report
      2017 Research-status Report
  • [Book] バイオイノベーションに向けて~バイオテクノロジーの新技術からの新しい視点~2019

    • Author(s)
      青木 航
    • Total Pages
      258
    • Publisher
      シーエムシー出版
    • ISBN
      9784781314112
    • Related Report
      2018 Annual Research Report
  • [Book] AI導入によるバイオテクノロジーの発展2018

    • Author(s)
      青木 航
    • Total Pages
      234
    • Publisher
      シーエムシー出版
    • ISBN
      9784781313153
    • Related Report
      2018 Annual Research Report 2017 Research-status Report

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Published: 2017-07-21   Modified: 2020-03-30  

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