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RNA-chromatin interaction prediction and application

Research Project

Project/Area Number 17K20032
Research Category

Grant-in-Aid for Challenging Research (Exploratory)

Allocation TypeMulti-year Fund
Research Field Applied informatics and related fields
Research InstitutionWaseda University

Principal Investigator

Hamada Michiaki  早稲田大学, 理工学術院, 教授 (00596538)

Co-Investigator(Kenkyū-buntansha) 岩切 淳一  東京大学, 大学院新領域創成科学研究科, 助教 (40770160)
Project Period (FY) 2017-06-30 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2019: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2018: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2017: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
KeywordsノンコーディングRNA / lncRNA / R-loop / 分子間相互作用 / リピート要素 / RNA-DNA相互作用 / オミクスデータ / クロマチン / 長鎖ノンコーディングRNA / トランスポゾン / 相互作用 / ランダムフォレスト / RNAクロマチン相互作用 / RNA
Outline of Final Research Achievements

We found different repetitive elements associated with R-loop formation in different species. Satellites, LINEs, and DNA transposons were found to be specifically enriched in R-loops in human, Drosophila, and Arabidopsis, respectively. R-loops tended to occur in regions of low complexity or simple repeats across species, and the repeat elements associated with R-loop formation were found to vary by developmental stage. For example, LINE and long terminal repeat retrotransposons (LTRs) were found to be more likely to contain R-loops in embryos and low complexity or simple repeats in postdevelopmental S2 cells.

Academic Significance and Societal Importance of the Research Achievements

RNAとクロマチンの相互作用のひとつであるRループ構造と従来はジャンクだと考えられていたリピート要素との関連性を,バイオインフォマティクス的なアプローチにより包括的に解析を行った.Rループは疾患などのさまざまな生命現象に深く寄与していることが考えられるため,われわれの研究結果は今までわかっていなかった生命分子メカニズムの解明に寄与することが期待される.

Report

(7 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Research-status Report
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (61 results)

All 2022 2021 2020 2019 2018

All Journal Article (16 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 16 results,  Open Access: 13 results) Presentation (44 results) (of which Invited: 5 results) Book (1 results)

  • [Journal Article] Prediction of RNA-protein interactions using a nucleotide language model2022

    • Author(s)
      Yamada Keisuke、Hamada Michiaki
    • Journal Title

      Bioinformatics Advances

      Volume: 2 Issue: 1

    • DOI

      10.1093/bioadv/vbac023

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] G0S2 regulates innate immunity in Kawasaki disease via lncRNA HSD11B1-AS12022

    • Author(s)
      Okabe Mako、Takarada Shinya、Miyao Nariaki、Nakaoka Hideyuki、Ibuki Keijiro、Ozawa Sayaka、Watanabe Kazuhiro、Tsuji Harue、Hashimoto Ikuo、Hatasaki Kiyoshi、Hayakawa Shotaro、Hamaguchi Yu、Hamada Michiaki、Ichida Fukiko、Hirono Keiichi
    • Journal Title

      Pediatric Research

      Volume: 15 Issue: 2 Pages: 378-387

    • DOI

      10.1038/s41390-022-01999-9

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] HT-SELEX-based identification of binding pre-miRNA hairpin-motif for small molecules2022

    • Author(s)
      Mukherjee Sanjukta、Murata Asako、Ishida Ryoga、Sugai Ayako、Dohno Chikara、Hamada Michiaki、Krishna Sudhir、Nakatani Kazuhiko
    • Journal Title

      Molecular Therapy - Nucleic Acids

      Volume: 27 Pages: 165-174

    • DOI

      10.1016/j.omtn.2021.11.021

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Possible roles for the hominoid-specific DSCR4 gene in human cells2021

    • Author(s)
      Saber Morteza M.、Karimiavargani Marziyeh、Uzawa Takanori、Hettiarachchi Nilmini、Hamada Michiaki、Ito Yoshihiro、Saitou Naruya
    • Journal Title

      Genes & Genetic Systems

      Volume: 96 Issue: 1 Pages: 1-11

    • DOI

      10.1266/ggs.20-00012

    • NAID

      130008035886

    • ISSN
      1341-7568, 1880-5779
    • Year and Date
      2021-02-01
    • Related Report
      2021 Research-status Report
    • Peer Reviewed
  • [Journal Article] Multi-resBind: a residual network-based multi-label classifier for in vivo RNA binding prediction and preference visualization2021

    • Author(s)
      Zhao Shitao、Hamada Michiaki
    • Journal Title

      BMC Bioinformatics

      Volume: 22 Issue: 1 Pages: 554-554

    • DOI

      10.1186/s12859-021-04430-y

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Impact of human gene annotations on RNA-seq differential expression analysis2021

    • Author(s)
      Hamaguchi Yu、Zeng Chao、Hamada Michiaki
    • Journal Title

      BMC Genomics

      Volume: 22 Issue: 1 Pages: 730-730

    • DOI

      10.1186/s12864-021-08038-7

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Clone decomposition based on mutation signatures provides novel insights into mutational processes2021

    • Author(s)
      Matsutani Taro、Hamada Michiaki
    • Journal Title

      NAR Genomics and Bioinformatics

      Volume: 3 Issue: 4

    • DOI

      10.1093/nargab/lqab093

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Binding patterns of RNA-binding proteins to repeat-derived RNA sequences reveal putative functional RNA elements2021

    • Author(s)
      Onoguchi Masahiro、Zeng Chao、Matsumaru Ayako、Hamada Michiaki
    • Journal Title

      NAR Genomics and Bioinformatics

      Volume: 3 Issue: 3

    • DOI

      10.1093/nargab/lqab055

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Umibato: estimation of time-varying microbial interaction using continuous-time regression hidden Markov model2021

    • Author(s)
      Hosoda Shion、Fukunaga Tsukasa、Hamada Michiaki
    • Journal Title

      Bioinformatics

      Volume: 37 Issue: Supplement_1 Pages: i16-i24

    • DOI

      10.1093/bioinformatics/btab287

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Long Non-Coding RNA CRNDE Is Involved in Resistance to EGFR Tyrosine Kinase Inhibitor in EGFR-Mutant Lung Cancer via eIF4A3/MUC1/EGFR Signaling2021

    • Author(s)
      Takahashi Satoshi、Noro Rintaro、Seike Masahiro、Zeng Chao、Matsumoto Masaru、Yoshikawa Akiko、Nakamichi Shinji、Sugano Teppei、Hirao Mariko、Matsuda Kuniko、Hamada Michiaki、Gemma Akihiko
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 22 Issue: 8 Pages: 4005-4005

    • DOI

      10.3390/ijms22084005

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Jonckheere-Terpstra-Kendall-based non-parametric analysis of temporal differential gene expression2021

    • Author(s)
      Iuchi Hitoshi、Hamada Michiaki
    • Journal Title

      NAR Genomics and Bioinformatics

      Volume: 3 Issue: 1

    • DOI

      10.1093/nargab/lqab021

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of m6A-Associated RNA Binding Proteins Using an Integrative Computational Framework2021

    • Author(s)
      Zhang Yiqian、Hamada Michiaki
    • Journal Title

      Frontiers in Genetics

      Volume: 12 Pages: 625797-625797

    • DOI

      10.3389/fgene.2021.625797

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Association analysis of repetitive elements and R-loop formation across species2021

    • Author(s)
      Zeng Chao、Onoguchi Masahiro、Hamada Michiaki
    • Journal Title

      Mobile DNA

      Volume: 12 Issue: 1 Pages: 3-3

    • DOI

      10.1186/s13100-021-00231-5

    • Related Report
      2021 Research-status Report 2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Detection and Characterization of Ribosome-Associated Long Noncoding RNAs2020

    • Author(s)
      Zeng Chao、Hamada Michiaki
    • Journal Title

      Methods in Molecular Biology

      Volume: 2254 Pages: 179-194

    • DOI

      10.1007/978-1-0716-1158-6_11

    • ISBN
      9781071611579, 9781071611586
    • Related Report
      2021 Research-status Report
    • Peer Reviewed
  • [Journal Article] LncRRIsearch: a web server for lncRNA-RNA interaction prediction integrated with tissue-specific expression and subcellular localization data2019

    • Author(s)
      Tsukasa Fukunaga, Junichi Iwakiri, Yukiteru Ono and Michiaki Hamada
    • Journal Title

      Front. Genet.

      Volume: - Pages: 462-462

    • DOI

      10.3389/fgene.2019.00462

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Computational approaches for alternative and transient secondary structures of ribonucleic acids2019

    • Author(s)
      Fukunaga Tsukasa、Hamada Michiaki
    • Journal Title

      Briefings in Functional Genomics

      Volume: - Issue: 3 Pages: 182-191

    • DOI

      10.1093/bfgp/ely042

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Presentation] De novo repeat detection using inexact seed2022

    • Author(s)
      Atsushi Takeda(早大/CBBD-OIL), Yuta Imazu(東大), Daisuke Nonaka(東大), Tsukasa Fukunaga(早大), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      Tokyo Bioinformatics Meeting 第5回研究会
    • Related Report
      2021 Research-status Report
  • [Presentation] The function of transposons as cell-type specific gene regulatory regions in the adult mouse brain2022

    • Author(s)
      Kotaro Sekine(早大), Masahiro Onoguchi(早大/CBBD-OIL), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      Tokyo Bioinformatics Meeting 第5回研究会
    • Related Report
      2021 Research-status Report
  • [Presentation] A novel fast pipeline for RNA homology search considering secondary structure2022

    • Author(s)
      Kento Kubo(早大), Tsukasa Fukunaga(早大), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      Tokyo Bioinformatics Meeting 第5回研究会
    • Related Report
      2021 Research-status Report
  • [Presentation] Estimation of Stability of State transition of Human gut microbiota using Hidden Markov Model2022

    • Author(s)
      YOKOYAMA Gentaro(早大), HOSODA Shion(早大/CBBD-OIL), FUKUNAGA Tsukasa(早大), HAMADA Michiaki(早大/CBBD-OIL)
    • Organizer
      Tokyo Bioinformatics Meeting 第5回研究会
    • Related Report
      2021 Research-status Report
  • [Presentation] 二次構造情報を考慮したアプタマー生成モデル2022

    • Author(s)
      Akiya MICHISHITA(早大), Shunsuke SUMI(早大/京大) Natsuki IWANO(早大), Michiaki HAMADA(早大/CBBD-OIL)
    • Organizer
      Tokyo Bioinformatics Meeting 第5回研究会
    • Related Report
      2021 Research-status Report
  • [Presentation] Classification of antibiotic resistance mechanisms considering the interaction of distal sequences2022

    • Author(s)
      Kanami Yagimoto(早大),Shion HOSODA(早大/CBBD-OIL),Michiaki HAMADA(早大/CBBD-OIL)
    • Organizer
      Tokyo Bioinformatics Meeting 第5回研究会
    • Related Report
      2021 Research-status Report
  • [Presentation] The analysis of mutational signatures for understanding carcinogenesis considering temporal heterogeneity2022

    • Author(s)
      Shiina NAITO(早大), Taro Matsutani(早大/CBBD-OIL), Michiaki HAMADA(早大/CBBD-OIL)
    • Organizer
      Tokyo Bioinformatics Meeting 第5回研究会
    • Related Report
      2021 Research-status Report
  • [Presentation] ヒトのエンハンサーと遺伝子相互作用や転写制御に影響する、方向性のある転写因子DNA結合配列の解析法の開発2022

    • Author(s)
      大里直樹(早大)、浜田 道昭(早大/CBBD-OIL)
    • Organizer
      第67回バイオ情報学研究会
    • Related Report
      2021 Research-status Report
  • [Presentation] 深層学習の予測結果に寄与する因子の大規模な解析に伴うノイズの影響の低減2022

    • Author(s)
      大里直樹(早大)、浜田 道昭(早大/CBBD-OIL)
    • Organizer
      第24回情報論的学習理論ワークショップ
    • Related Report
      2021 Research-status Report
  • [Presentation] 深層学習を用いた、ヒトのエンハンサー・遺伝子相互作用に影響する転写因子の解析2022

    • Author(s)
      大里直樹(早大)、浜田 道昭(早大/CBBD-OIL)
    • Organizer
      「データ駆動・AI駆動を中心としたデジタルトランスフォーメーションによる生命科学研究の革新[バイオDX]」 キックオフシンポジウム「バイオDXの最前線」
    • Related Report
      2021 Research-status Report
  • [Presentation] ヒトのエンハンサーと遺伝子相互作用や転写制御に影響する、方向性のある転写因子DNA結合配列の解析法の開発2022

    • Author(s)
      大里直樹(早大)、浜田 道昭(早大/CBBD-OIL)
    • Organizer
      第68回バイオ情報学研究会
    • Related Report
      2021 Research-status Report
  • [Presentation] ヒトのエンハンサーと遺伝子相互作用や転写制御に影響する、方向性のある転写因子DNA結合配列の解析法の開発2022

    • Author(s)
      大里直樹(早大)、浜田 道昭(早大/CBBD-OIL)
    • Organizer
      第44回日本分子生物学会年会
    • Related Report
      2021 Research-status Report
  • [Presentation] RNA情報学の最前線2022

    • Author(s)
      浜田 道昭(早大/CBBD-OIL)
    • Organizer
      生命情報科学勉強会
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] AIアプタマー創薬プロジェクト2022

    • Author(s)
      浜田 道昭(早大/CBBD-OIL)
    • Organizer
      日本医科大学・早稲田大学合同シンポジウム
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] ゲノム社会とバイオインフォマティクス2022

    • Author(s)
      浜田 道昭(早大/CBBD-OIL)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] AIアプタマー創薬「アプタマー研究の最前線」2022

    • Author(s)
      浜田 道昭(早大/CBBD-OIL)
    • Organizer
      分子生物学会ワークショップ1PWS1-09
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] レファレンスフリーな発現変動解析ツールの比較2022

    • Author(s)
      吉次なぎ(TIRI/早大)、浜口 悠(早大)、曽超(早大/CBBD-OIL)、浜田道昭(早大/CBBD-OIL)
    • Organizer
      RNAフロンティアミーティング
    • Related Report
      2021 Research-status Report
  • [Presentation] Searching for Repeat-derived Functional Elements in RNAs2021

    • Author(s)
      Chao Zeng(早大/CBBD-OIL), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      第22回日本RNA学会年会
    • Related Report
      2021 Research-status Report
  • [Presentation] Prediction of RNA-Protein Interactions Using a Nucleotide Language Model2021

    • Author(s)
      Keisuke Yamada(早大), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      第22回日本RNA学会年会
    • Related Report
      2021 Research-status Report
  • [Presentation] Relationship between abnormal retrotransposition and development of schizophrenia in neurons2021

    • Author(s)
      Miyako Ishihara(早大), Kotaro Sekine(早大), Masahiro Onoguchi(早大/CBBD-OIL), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      第44回日本神経科学大会・CJK第1回国際会議
    • Related Report
      2021 Research-status Report
  • [Presentation] The function of transposons as regulatory DNA elements in excitatory neurons2021

    • Author(s)
      Kotaro Sekine(早大), Masahiro Onoguchi(早大/CBBD-OIL), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      第44回日本神経科学大会・CJK第1回国際会議
    • Related Report
      2021 Research-status Report
  • [Presentation] ヒト遺伝子アノテーションがRNA-seq解析に与える影響の評価2021

    • Author(s)
      Yu Hamaguchi(早大), Chao Zeng(早大/CBBD-OIL), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] E.coli K-12 MG1655株の機能未知遺伝子群y-omeの特徴解析及びその機能予測可能性の検証2021

    • Author(s)
      Hitoshi Iuchi(早大/CBBD-OIL), Michiaki Hamada(早大/CBBD-OIL), Tsukasa Fukunaga(早大)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] リピート配列由来の機能エレメントの探索2021

    • Author(s)
      曽 超(早大/CBBD-OIL)、浜田 道昭i(早大/CBBD-OIL)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] ヒトのエンハンサーと遺伝子相互作用や転写制御に影響する、方向性のある転写因子DNA結合配列の発見2021

    • Author(s)
      大里 直樹(早大)、浜田 道昭(早大/CBBD-OIL)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] A novel fast pipeline for RNA homology search considering secondary structure with E-value calculation2021

    • Author(s)
      Kento Kubo(早大), Tsukasa Fukunaga(早大), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] LDAを使用した微生物-代謝物相互作用の推定,2021

    • Author(s)
      Risa Maemura(早大), Shion Hosoda(早大/CBBD-OIL), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] 塩基対確率に基づくRNA二次構造検索ツールの開発2021

    • Author(s)
      Chisato Yuki(早大), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] 転写因子結合部位として働く反復配列の発見とその機能の解明2021

    • Author(s)
      Ryo Niwa(早大), Chao Zeng(早大/CBBD-OIL), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] 細菌叢データにおける系統樹に基づいた回帰のためのベイジアンモデルの提案2021

    • Author(s)
      Shion Hosoda(早大/CBBD-OIL), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] 深層学習を用いたRNAアクセシビリティ予測の高速化2021

    • Author(s)
      Kaisei Hara(早大), Natsuki Iwano(早大), Tsukasa Fukunaga(早大/東大), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] IS-divergenceを用いた非負値行列因子分解による変異シグネチャ抽出ツールの改善2021

    • Author(s)
      Risa Akita(早大), Taro Matsutani(早大/CBBD-OIL), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] ニューロンにおける転移因子の転移異常と統合失調症発症の関係2021

    • Author(s)
      Miyako Ishihara(早大), Kotaro Sekine(早大), Masahiro Onoguchi(早大/CBBD-OIL), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] 液-液相分離の現象に着目したエンハンサーRNAの機能解析2021

    • Author(s)
      Arisa Nozaki(早大), Masahiro Onoguchi(早大/CBBD-OIL), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] 脳における細胞種特異的なDNA結合モチーフとしての転移因子の機能2021

    • Author(s)
      Kotaro Sekine(早大), Masahiro Onoguchi(早大/CBBD-OIL), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] 変異クラスに依存しない階層ベイズモデルに基づくがんゲノムのIndelシグネチャー決定2021

    • Author(s)
      Taro Matsutani(早大/CBBD-OIL), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] 隠れマルコフモデルを用いたヒト腸内細菌叢の個人内エンテロタイプ遷移の推定2021

    • Author(s)
      横山 源太朗(早大)、細田 至温(早大/CBBD-OIL)、福永 津嵩(早大/東大)、浜田 道昭(早大/CBBD-OIL)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] A variational autoencoder with profile hidden Markov model for generative aptamer discovery2021

    • Author(s)
      Natsuki Iwano(早大), Tatsuo Adachi, Kazuteru Aoki, Yoshikazu Nakamura and Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] 変異アレル頻度を考慮したヒトがんゲノムの変異シグネチャー解析2021

    • Author(s)
      Taro Matsutani(早大/CBBD-OIL), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] De Novo Repeat Detection using Inexact Seed2021

    • Author(s)
      Atsushi Takeda(早大), Daisuke Nonaka(東大), Yuta Imazu(東大), Tsukasa Fukunaga(早大), Michiaki Hamada(早大/CBBD-OIL)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] Binding Patterns of RNA Binding Proteins To Repeat-Derived RNA Sequences Reveal Putative Functional RNA Elements2021

    • Author(s)
      Masahiro Onoguchi(早大/CBBD-OIL; 筆頭),Chao Zeng(早大/CBBD-OIL), Ayako Matsumaru, Michiaki Hamada(早大/CBBD-OIL; C.A.)
    • Organizer
      第22回日本RNA学会年会
    • Related Report
      2021 Research-status Report
  • [Presentation] Binding patterns of RNA binding proteins to repeat-derived RNA sequences reveal putative functional RNA elements2021

    • Author(s)
      Masahiro Onoguchi(早大/CBBD-OIL; 筆頭),Chao Zeng(早大/CBBD-OIL), Ayako Matsumaru, Michiaki Hamada(早大/CBBD-OIL; C.A.)
    • Organizer
      Keystone Symposia: Non-Coding RNAs: Biology and Applications
    • Related Report
      2021 Research-status Report
  • [Presentation] Umibato: estimation of time-varying microbial interaction using continuous-time regression hidden Markov model2021

    • Author(s)
      Shion Hosoda(早大/CBBD-OIL; 筆頭), Tsukasa Fukunaga(早大/東大), Michiaki Hamada(早大/CBBD-OIL; C.A.)
    • Organizer
      第10回生命医薬情報学連合大会(IIBMP2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] 生命科学と情報科学をつなぐバイオインフォマティクス研究2018

    • Author(s)
      浜田道昭
    • Organizer
      日本材料科学会 平成30年度学術講演大会
    • Related Report
      2017 Research-status Report
    • Invited
  • [Book] よくわかるバイオインフォマティクス入門2018

    • Author(s)
      藤 博幸、岩部 直之、川端 猛、浜田 道昭、門田 幸二、須山 幹太、光山 統泰、黒川 顕、森 宙史、東 光一、吉沢 明康、片山 俊明
    • Total Pages
      208
    • Publisher
      講談社
    • ISBN
      4065138213
    • Related Report
      2018 Research-status Report

URL: 

Published: 2017-07-21   Modified: 2024-01-30  

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