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Development of genome-wide method for analyzing radiation effects

Research Project

Project/Area Number 17K20053
Research Category

Grant-in-Aid for Challenging Research (Exploratory)

Allocation TypeMulti-year Fund
Research Field Environmental analyses and evaluation and related fields
Research InstitutionNational Institutes for Quantum and Radiological Science and Technology

Principal Investigator

ARAKI RYOKO  国立研究開発法人量子科学技術研究開発機構, 放射線医学総合研究所 放射線障害治療研究部, グループリーダー(定常) (40392211)

Project Period (FY) 2017-06-30 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Fiscal Year 2018: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Fiscal Year 2017: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Keywordsゲノム変異 / 全ゲノムシーケンシング / 放射線 / iPS細胞 / SNV / INDEL / DNA損傷 / 変異 / 次世代シーケンシング
Outline of Final Research Achievements

In the study of radiation effects, understanding the frequency and quality of genomic mutations is a central issue, and highly accurate and comprehensive (genome-wide) analysis using the next-generation sequencing method has been long awaited. However, it is impossible to analyze an independent abnormality that occurs in each cell. In this study, we investigated the possibility of applying iPS cell technology for clonal expansion of X-irradiated cells. We tried to identify SNV and INDEL mutations in iPS cells established from human and mouse cells irradiated by various dose of X-ray and demonstrated the potential of iPS cell technology for genome-wide analysis of radiation effects.

Academic Significance and Societal Importance of the Research Achievements

本研究成果は、放射線によるDNA損傷の分子メカニズムの理解、更には、被ばく事故における被ばく線量の正確な推定、さらには発癌研究に貢献する可能性を有している。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (5 results)

All 2020 2019 2018 2017

All Journal Article (2 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 2 results,  Open Access: 1 results) Presentation (3 results)

  • [Journal Article] Genetic aberrations in iPSCs are introduced by a transient G1/S cell cycle checkpoint deficiency2020

    • Author(s)
      Araki Ryoko、Hoki Yuko、Suga Tomo、Obara Chizuka、Sunayama Misato、Imadome Kaori、Fujita Mayumi、Kamimura Satoshi、Nakamura Miki、Wakayama Sayaka、Nagy Andras、Wakayama Teruhiko、Abe Masumi
    • Journal Title

      Nature Communications

      Volume: 11 Issue: 1 Pages: 197-197

    • DOI

      10.1038/s41467-019-13830-x

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Low and High LET Ionizing Radiation-Induced Delayed Homologous Recombination Persists for Two Weeks Before Resolving.2017

    • Author(s)
      C.P. Allen, H.Hirakawa, N.Izumi-Nakajima, S.Moore, J.Nie, N.Sharma, M.Sugiura, Y.Hoki, R.Araki, M.Abe, R.Okayasu, A.Fujimori and J.A.Nickoloff
    • Journal Title

      Radiation Research

      Volume: 188 Issue: 1 Pages: 82-93

    • DOI

      10.1667/rr14748.1

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Reprogrammed cellにおけるINDEL解析2019

    • Author(s)
      上村 悟氏, 菅 智, 砂山 美里, 藤森(法喜)ゆう子, 小原 千寿香, 今留 香織, 藤田 真由美, 中村 美樹, 安倍 真澄,
    • Organizer
      第42回 日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] iPS細胞におけるゲノム変異 -INDEL解析-2018

    • Author(s)
      菅 智, 砂山 美里, 藤森(法喜) ゆう子, 小原 千寿香, 今留 香織, 藤田 真由美, 中村 美樹, 安倍 真澄, 荒木 良子
    • Organizer
      第41回 日本分子生物学会年会, 日本分子生物学会
    • Related Report
      2018 Research-status Report
  • [Presentation] iPS細胞ゲノム内点突然変異の頻度は変えられるか?2017

    • Author(s)
      藤森 ゆう子, 砂山 美里, 小原 千寿香, 今留 香織, 菅 智, 藤田 真由美, 安倍 真澄, 荒木 良子
    • Organizer
      第40回日本分子生物学会年会
    • Related Report
      2017 Research-status Report

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Published: 2017-07-21   Modified: 2021-02-19  

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