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Analysis of human iPSC differentiation into definitive endoderm using CRISPR screening

Research Project

Project/Area Number 17K20146
Research Category

Fund for the Promotion of Joint International Research (Home-Returning Researcher Development Research)

Allocation TypeMulti-year Fund
Review Section Biological Sciences
Research InstitutionKyoto University

Principal Investigator

YUSA Kosuke  京都大学, ウイルス・再生医科学研究所, 教授 (00813180)

Project Period (FY) 2018 – 2020
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥58,500,000 (Direct Cost: ¥45,000,000、Indirect Cost: ¥13,500,000)
KeywordsヒトES細胞 / ヒトiPS細胞 / 分化 / 胚性内胚葉 / CRISPRスクリーニング / 多能性 / 未分化能 / 細胞分化 / 分化指向性 / 内胚葉
Outline of Final Research Achievements

It has been known that there is substantial heterogeneity of differentiation preference among human pluripotent stem cell (hPSC) lines. Highly efficient differentiation is prerequisite for the usage of hPSCs in various applications such as in vitro disease modeling and cell-based therapy; however, the heterogeneity can limit the potential of hPSC lines. The current study aimed to address this issue by identifying factors that affect hPSC differentiation, particularly into definitive endoderm (DE). We conducted CRISPR screening and identified several differentiation blocker candidates. Genetic inactivation of these factors increased DE differentiation in multiple hPSC lines. The molecular basis of this effect remains elusive, but our findings may generate an efficient differentiation protocol applicable for a wide range of hPSC lines.

Academic Significance and Societal Importance of the Research Achievements

これまでに複数の大型プロジェクトによって正常および患者由来ヒトiPS細胞が作製されている。またヒトES細胞株も多数存在する。このようなヒト多能性幹細胞の応用例として、培養容器上で細胞分化を行って病気を再現し、メカニズム解明や治療法探索があげられる。しかし、提供者が異なるiPS細胞は分化効率の差が大きく、応用研究の障壁となっている。本研究は、この障壁の原因となる候補因子をゲノム編集技術を用いた遺伝子スクリーニングによって同定した。より効率が良く高品質な分化細胞を得るための分化法の開発につながり、今後のヒト多能性幹細胞を用いた研究への応用が期待される。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (14 results)

All 2021 2019 2018 Other

All Int'l Joint Research (1 results) Journal Article (2 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 2 results,  Open Access: 2 results) Presentation (11 results) (of which Int'l Joint Research: 4 results,  Invited: 11 results)

  • [Int'l Joint Research] ウエルカムサンガー研究所(英国)

    • Related Report
      2020 Annual Research Report
  • [Journal Article] Minimal genome-wide human CRISPR-Cas9 library.2021

    • Author(s)
      Goncalves E, Thomas M, Behan FM, Picco G, Pacini C, Allen F, Vinceti A, Sharma M, Jackson DA, Price S, Beaver CM, Dovey O, Parry-Smith D, Iorio F, Parts L, Yusa K, Garnett MJ.
    • Journal Title

      Genome Biology

      Volume: 22 Issue: 1

    • DOI

      10.1186/s13059-021-02268-4

    • Description
      印刷中
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] KAT7 is a genetic vulnerability of acute myeloid leukemias driven by MLL rearrangements2021

    • Author(s)
      Au YZ, Gu M, De Braekeleer E, Gozdecka M, Aspris D, Tarumoto Y, Cooper J, Yu J, Ong SH, Chen X, Tzelepis K, Huntly BJP, Vassiliou G, Yusa K.
    • Journal Title

      Leukemia

      Volume: 35 Issue: 4 Pages: 1012-1022

    • DOI

      10.1038/s41375-020-1001-z

    • NAID

      120006976051

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] CRISPR-KOスクリーニングの開発とがん研究への応用2021

    • Author(s)
      遊佐宏介
    • Organizer
      日本癌学会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] CRISPR-KOスクリーニングの開発と創薬研究への応用2021

    • Author(s)
      遊佐宏介
    • Organizer
      千里ライフサイエンスシンポジウム
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] CRISPR-KOスクリーニングの開発と応用2021

    • Author(s)
      遊佐宏介
    • Organizer
      日本分子生物学会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] CRISPR-KOスクリーニング法の開発と応用2019

    • Author(s)
      遊佐 宏介
    • Organizer
      日本ゲノム編集学会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] CRISPR-KOスクリーニング法の開発と応用2019

    • Author(s)
      遊佐 宏介
    • Organizer
      日本遺伝学会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] CRISPR-KO スクリーニング法の開発と応用2019

    • Author(s)
      遊佐 宏介
    • Organizer
      SULSA, Scottish Universities Life Science Alliance
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] CRISPR-KO スクリーニング法の開発と応用2019

    • Author(s)
      遊佐 宏介
    • Organizer
      Frontiers in Genome Engineering 2019
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 大規模全ゲノムCRISPRスクリーニングによる創薬候補の探索2018

    • Author(s)
      遊佐宏介
    • Organizer
      日本分子生物学会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] Oncology drug candidates identified from genome-wide CRISPR screens of 204 cancer cell lines2018

    • Author(s)
      遊佐宏介
    • Organizer
      日本癌学会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] Identification of novel drug targets using CRISPR screens in cancer2018

    • Author(s)
      遊佐宏介
    • Organizer
      National Institute of Genetics
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] CRISPR-based genetic screening2018

    • Author(s)
      遊佐宏介
    • Organizer
      Croucher Summer Course Precision Genome Engineering by CRISPR
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited

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Published: 2018-03-28   Modified: 2022-04-15  

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