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Elucidation of temporal mechanism based on spatial regulation of cell and creation of new theory of pattern formation

Research Project

Project/Area Number 17KK0094
Research Category

Fund for the Promotion of Joint International Research (Fostering Joint International Research)

Allocation TypeMulti-year Fund
Research Field Foundations of mathematics/Applied mathematics
Research InstitutionKyoto University (2021-2022)
Hiroshima University (2017-2020)

Principal Investigator

Seirin-Lee Sungrim  京都大学, 高等研究院, 教授 (50620069)

Project Period (FY) 2018 – 2022
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥13,520,000 (Direct Cost: ¥10,400,000、Indirect Cost: ¥3,120,000)
Keywordsパターン形成 / 細胞の機能と時空間制御 / 細胞極性形成 / 極性形成 / 細胞の形 / 細胞極性 / パターン形成の時空間制御 / 数理モデリング
Outline of Final Research Achievements

Asymmetric cell division is one of the crucial mechanisms that create cellular diversity during early development. One of the processes underlying asymmetric cell division is cell polarity. The process of cell polarity can be divided into two major phases, the Establishment Phase, in which polarity patterns are emerged and formed, and the Maintenance Phase, in which polarity patterns are maintained. In this study, the mechanisms of these two phases were clarified in collaboration with researchers at the University of Oxford. Furthermore, we extended this research for investigating the influence of the spatial structure of cells and cellular tissue on pattern formation was mathematically discussed, and mathematical analysis revealed that the interaction of the two phases has an important influence on pattern formation.

Academic Significance and Societal Importance of the Research Achievements

本研究では細胞の初期発生に極めて重要な非対称細胞分裂において、今まで謎で残されていた時間フェーズにおけるタンパク質の役割と極性形成の関係を初めて明らかにできた。さらに、細胞本来が持つ構造的性質と細胞組織の構造的性質を一般化した2層構造空間におけるパターン形成の数学的構造を明らかにする研究に発展できた。
これらの研究はタンパク質の相互作用のみに注目してきたパターン形成における従来の視点を、細胞の幾何学的性質や時空間構造に重点をおく新たなパターン形成研究への新発想を導く研究成果であると考える。

Report

(6 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Research-status Report
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (25 results)

All 2022 2021 2020 2019 2018

All Int'l Joint Research (1 results) Journal Article (8 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 8 results,  Open Access: 8 results) Presentation (13 results) (of which Int'l Joint Research: 7 results,  Invited: 13 results) Funded Workshop (3 results)

  • [Int'l Joint Research] University of Oxford(英国)2019

    • Related Report
      2022 Annual Research Report
  • [Journal Article] The Role of Cytoplasmic MEX-5/6 Polarity in Asymmetric Cell Division2021

    • Author(s)
      Seirin-Lee Sungrim
    • Journal Title

      Bulletin of Mathematical Biology

      Volume: 83 Issue: 4 Pages: 1-27

    • DOI

      10.1007/s11538-021-00860-0

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] CDC-42 Interactions with Par Proteins Are Critical for Proper Patterning in Polarization2020

    • Author(s)
      Seirin-Lee Sungrim、Gaffney Eamonn A.、Dawes Adriana T.
    • Journal Title

      Cells

      Volume: 9 Issue: 9 Pages: 2036-2036

    • DOI

      10.3390/cells9092036

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A Single Reaction-Diffusion Equation for the Multifarious Eruptions of Urticaria2020

    • Author(s)
      Seriri Lee, Yanase Y, Takahagi S, Hide M
    • Journal Title

      Plos Computor

      Volume: 16 Issue: 1 Pages: e1007590-e1007590

    • DOI

      10.1371/journal.pcbi.1007590

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Transitions to slow or fast diffusions provide a general property for in-phase or anti-phase polarity in a cell.2020

    • Author(s)
      Seirin-Lee S, Sukekawa T, Nakahara T, Ishii H, Ei SI
    • Journal Title

      Journal of Mathematical biology

      Volume: 1 Issue: 6 Pages: 1-27

    • DOI

      10.1007/s00285-020-01484-z

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Asymmetric cell division from a cell to cells: Shape, length, and location of polarity domain2020

    • Author(s)
      Seirin‐Lee Sungrim
    • Journal Title

      Development, Growth & Differentiation

      Volume: 62 Issue: 3 Pages: 188-195

    • DOI

      10.1111/dgd.12652

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Role of dynamic nuclear deformation on genomic architecture reorganization2019

    • Author(s)
      Seirin-Lee Sungrim、Osakada Fumitaka、Takeda Junichi、Tashiro Satoshi、Kobayashi Ryo、Yamamoto Takashi、Ochiai Hiroshi
    • Journal Title

      PLOS Computational Biology

      Volume: 15 Issue: 9 Pages: 1-25

    • DOI

      10.1371/journal.pcbi.1007289

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dynamics of Localized Unimodal Patterns in Reaction-Diffusion Systems for Cell Polarization by Extracellular Signaling2018

    • Author(s)
      Kuwamura Masataka、Seirin-Lee Sungrim、Ei Shin-ichiro
    • Journal Title

      SIAM Journal on Applied Mathematics

      Volume: 78 Issue: 6 Pages: 3238-3257

    • DOI

      10.1137/18m1163749

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Phase Field Method and Its Application to Biology2018

    • Author(s)
      LEE S. Seirin、KOBAYASHI Ryo
    • Journal Title

      Seibutsu Butsuri

      Volume: 58 Issue: 4 Pages: 216-219

    • DOI

      10.2142/biophys.58.216

    • NAID

      130007420532

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] From Geometry To Patterns2022

    • Author(s)
      李聖林
    • Organizer
      Vienna-Kyoto Biomath workshop
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Geometric constraints regulating cell arrangement2022

    • Author(s)
      李聖林
    • Organizer
      京都大学応用数学セミナー
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Cell polarity, shape, and flow2021

    • Author(s)
      S. Seirin-Lee
    • Organizer
      “Cell polarity, shape, and flow ”, RIMS workshop for Mathematical methods for the studies of flow, shape, and dynamics,
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Dynamics of cells and polarity in early development2021

    • Author(s)
      S. Seirin-Lee
    • Organizer
      ReaDiNet 2021: An Online Conference on Recent Topics in Reaction-Diffusion System, Biology, Medicine and Chemistry,
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 皮疹の形から紐解く皮膚医学への挑戦と数理2021

    • Author(s)
      S. Seirin-Lee
    • Organizer
      医学研究における数理的方法
    • Related Report
      2020 Research-status Report
    • Invited
  • [Presentation] Geometry (形); Inconspicuous regulator that determines the fate of cells2020

    • Author(s)
      S. Seirin-Lee
    • Organizer
      iTHEMS Colloquium
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Phase separation model for chromatin reorganization of eukaryotic cell nuclei2020

    • Author(s)
      S. Seirin-Lee
    • Organizer
      JSPS core-to-core program conference for Establishing International Research Network of Mathematical Oncology, Fusion of Mathematics and Biology
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 現象-数理-数学を繋ぐ反応拡散方程式2020

    • Author(s)
      S. Seirin-Lee
    • Organizer
      応用数学分科会・特別講演, 日本数学会年会
    • Related Report
      2020 Research-status Report
    • Invited
  • [Presentation] 反応拡散方程式、生命のパターン形成におけるその無限の才能2020

    • Author(s)
      S.Seirin-Lee
    • Organizer
      応用数学分科会・特別講演, 日本数学会年会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Pattern Formation from Cell to Dermatology,2019

    • Author(s)
      S.Seirin-Lee
    • Organizer
      A3 workshop for Mathematical Life Sciences
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] A general property for in-phase and anti-phase cell polarities in asymmetric cell division2019

    • Author(s)
      S.Seirin-Lee
    • Organizer
      Minisymposium Mathematical modeling, simulations and theories related to biological phenomena
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 反応拡散系で解く生命科学の謎、そして反応拡散形成で導く生命科学の美2018

    • Author(s)
      李聖林
    • Organizer
      数学と諸分野の協働に関する「講演会」
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 反応拡散系ではないけどドキドキ・ワクワクする数理モデル2018

    • Author(s)
      李聖林
    • Organizer
      非線形現象の数値シミュレーションと解析
    • Related Report
      2018 Research-status Report
    • Invited
  • [Funded Workshop] Vienna-Kyoto Biomath workshop2022

    • Related Report
      2022 Annual Research Report
  • [Funded Workshop] Mini-symposium, Diverse quantitative approaches integrating data and modelling in development and medicine, , SMB annual meeting 20212021

    • Related Report
      2021 Research-status Report
  • [Funded Workshop] A3 International Workshop on mathematical and life sciences2019

    • Related Report
      2019 Research-status Report

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Published: 2018-01-25   Modified: 2025-01-30  

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