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Multi-physics and multi-scale simulation of vascular network in biosystem

Research Project

Project/Area Number 17KK0128
Research Category

Fund for the Promotion of Joint International Research (Fostering Joint International Research)

Allocation TypeMulti-year Fund
Research Field Fluid engineering
Research InstitutionThe University of Tokyo

Principal Investigator

HASEGAWA Yosuke  東京大学, 生産技術研究所, 准教授 (30396783)

Project Period (FY) 2018 – 2020
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥14,170,000 (Direct Cost: ¥10,900,000、Indirect Cost: ¥3,270,000)
Keywords血管網リモデリング / 血流シミュレーション / マルチスケール・マルチフィジックス解析 / ゼブラフィッシュ / 血管リモデリング / マルチ・フェデリティ・シミュレーション
Outline of Final Research Achievements

We developed image processing techniques for reconstructing a complex three-dimensional vascular network structure from a series of confocal microscope images obtained from young zebrafish for blood flow simulation. Based on the obtained structures, we applied three different approaches for blood flow simulation, i.e., dissipative particle dynamics, three-dimensional continuum model and one-dimensional models under the same blood flow condition. In addition, by introducing the idea of parallelizing in time, we propose and validate a new simulation strategy, in which the entire time domain is decomposed into small sub-domains so that expensive DPD simulations can be conducted separately, and these results are integrated through cheap 1D model simulation.

Academic Significance and Societal Importance of the Research Achievements

生体内において血管が形成される過程、血管構造が異常化する過程を理解することは、血管発生学、医学、再生医療の分野において極めて重要な課題である。血管形成においては、血管内壁を構成する血管内皮細胞に対する血流による力学刺激が特に重要な因子であることが指摘されているものの、生体内において上記の血行力学因子を計測することは困難であるため、血管形成の機構については十分に理解が進んでいない。本研究では、ゼブラフィッシュのライブイメージングを通じて、脳内部の複雑3次元血管構造の再構築に成功すると共に、血流シミュレーションによって、血管内部の局所のせん断応力、圧力などの血行力学因子の予測ツールを開発した。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (38 results)

All 2021 2020 2019 2018

All Int'l Joint Research (1 results) Journal Article (16 results) (of which Int'l Joint Research: 7 results,  Peer Reviewed: 11 results,  Open Access: 13 results) Presentation (18 results) (of which Int'l Joint Research: 17 results,  Invited: 1 results) Book (2 results) Patent(Industrial Property Rights) (1 results)

  • [Int'l Joint Research] ブラウン大学(米国)2018

    • Year and Date
      2018-04-01
    • Related Report
      2020 Annual Research Report
  • [Journal Article] Numerical evaluation reveals the effect of branching morphology on vessel transport properties during angiogenesis2021

    • Author(s)
      Mirzapour-shafiyi, F., Kametani, Y., Hikita, T., Hasegawa, Y., Nakayama, M.
    • Journal Title

      PLOS Computational Biology

      Volume: accepted Pages: 1-28

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Multiscale parareal algorithm for long-time mesoscopic simulations of microvascular blood flow in Zebrafish2021

    • Author(s)
      Blumers, A., Yin, M., Nakajima, H., Hasegawa, Y., Li, Z., Karniadakis, G.E.
    • Journal Title

      arXiv

      Volume: 2101.08414 Pages: 1-23

    • Related Report
      2020 Annual Research Report
    • Open Access / Int'l Joint Research
  • [Journal Article] Dissimilar heat transfer enhancement in a fully developed laminar channel flow subjected to a traveling wave-like wall blowing and suction2021

    • Author(s)
      Kaithakkal Arjun J.、Kametani Yukinori、Hasegawa Yosuke
    • Journal Title

      International Journal of Heat and Mass Transfer

      Volume: 164 Pages: 120485-120485

    • DOI

      10.1016/j.ijheatmasstransfer.2020.120485

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Drag reduction in turbulent channel flow by large-scale optimal control input2020

    • Author(s)
      伊藤宗嵩、長谷川洋介
    • Journal Title

      SEISAN KENKYU

      Volume: 72 Issue: 1 Pages: 9-13

    • DOI

      10.11188/seisankenkyu.72.9

    • NAID

      130007792593

    • ISSN
      0037-105X, 1881-2058
    • Year and Date
      2020-01-01
    • Related Report
      2019 Research-status Report
    • Open Access
  • [Journal Article] Estimation of turbulent channel flow based on time-series wall measurements2020

    • Author(s)
      劉竺辰、長谷川洋介
    • Journal Title

      SEISAN KENKYU

      Volume: 72 Issue: 1 Pages: 5-8

    • DOI

      10.11188/seisankenkyu.72.5

    • NAID

      130007792528

    • ISSN
      0037-105X, 1881-2058
    • Year and Date
      2020-01-01
    • Related Report
      2019 Research-status Report
    • Open Access
  • [Journal Article] Budget analysis of dissimilarity between turbulent heat and momentum transfer in wall turbulence2020

    • Author(s)
      Kaithakkal, A. J., Kametani, Y., Hsegawa, Y.
    • Journal Title

      SEISAN KENKYU

      Volume: 72 Issue: 1 Pages: 15-18

    • DOI

      10.11188/seisankenkyu.72.15

    • NAID

      130007792510

    • ISSN
      0037-105X, 1881-2058
    • Year and Date
      2020-01-01
    • Related Report
      2019 Research-status Report
    • Open Access
  • [Journal Article] Heat transfer enhancement and pressure loss in a plate-fin heat exchanger with V-shaped oblique wavy surface2020

    • Author(s)
      Gong Jiaming、Onishi Junya、He An、Kametani Yukinori、Hasegawa Yosuke、Shikazono Naoki
    • Journal Title

      International Journal of Heat and Mass Transfer

      Volume: 161 Pages: 120263-120263

    • DOI

      10.1016/j.ijheatmasstransfer.2020.120263

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A new framework for design and validation of complex heat transfer surfaces based on adjoint optimization and rapid prototyping technologies2020

    • Author(s)
      KAMETANI Yukinori、FUKUDA Yutaka、OSAWA Takayuki、HASEGAWA Yosuke
    • Journal Title

      Journal of Thermal Science and Technology

      Volume: 15 Issue: 2 Pages: JTST0016-JTST0016

    • DOI

      10.1299/jtst.2020jtst0016

    • NAID

      130007883960

    • ISSN
      1880-5566
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 熱流体システムへの最適制御理論の応用2020

    • Author(s)
      長谷川 洋介,亀谷 幸憲,中倉 満帆,伊藤 宗嵩
    • Journal Title

      計測と情報

      Volume: 59 Pages: 527-534

    • NAID

      130007889502

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dissimilarity between turbulent heat and momentum transfer induced by a streamwise travelling wave of wall blowing and suction2020

    • Author(s)
      Kaithakkal, A. J., Kametani, Y., Hsegawa, Y.
    • Journal Title

      Journal of Fluid Mechanics

      Volume: 886

    • DOI

      10.1017/jfm.2019.1045

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Spatial reconstruction of steady scalar sources from remote measurements in turbulent flow2019

    • Author(s)
      Wang, Q., Hasegawa, Y., Zaki, T.
    • Journal Title

      Journal of Fluid Mechanics

      Volume: 870 Pages: 316-352

    • DOI

      10.1017/jfm.2019.241

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Topology optimization of electrolyte-electrode interfaces of solid oxide fuel cells using the adjoint method2019

    • Author(s)
      Onishi, J., Kametani, Y., Hasegawa, Y., Shikazono, N.
    • Journal Title

      Journal of The Electrochemical Society

      Volume: 166 Issue: 13 Pages: F876-F888

    • DOI

      10.1149/2.0031913jes

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 毛細血管網の分岐形態が微小循環の輸送特性に与える影響2019

    • Author(s)
      亀谷 幸憲,MIRZAPOURSHAFIYI Fatemeh,中山 雅敬,長谷川洋介
    • Journal Title

      日本流体力学会誌「ながれ」

      Volume: 38 Pages: 411-414

    • Related Report
      2019 Research-status Report
    • Open Access
  • [Journal Article] Predicting turbulent spectra in drag-reduced flows2018

    • Author(s)
      Davide Gatti, Alexander Stroh, Bettina Frohnapfel, Yosuke Hasegawa
    • Journal Title

      Flow Turbulence and Combustion

      Volume: 100 Issue: 4 Pages: 1081-1099

    • DOI

      10.1007/s10494-018-9920-8

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Global energy fluxes in fully-developed turbulent channels with flow control2018

    • Author(s)
      Davide Gatti, Andrea Cimarelli, Yosuke Hasegawa, Bettina Frohnapfel, Maurizio Quadrio
    • Journal Title

      Journal of Fluid Mechanics

      Volume: 857 Pages: 345-373

    • DOI

      10.1017/jfm.2018.749

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Numerical and experimental analyses of three-dimensional unsteady flow around a micro-pillar subjected to rotational vibration2018

    • Author(s)
      Kanji Kaneko, Takayuki Osawa, Yukinori Kametani, Ken Hayakawa, Yosuke Hasegawa, Hiroaki Suzuki
    • Journal Title

      Micromachine

      Volume: 9 Issue: 12 Pages: 668-668

    • DOI

      10.3390/mi9120668

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] ゼブラフィッシュ脳内血管網における生体ライブイメージングを用いた1次元血流モデルの検証2020

    • Author(s)
      中倉満帆,Yin, M., 中嶋洋行,Karniadakis, G., 長谷川洋介
    • Organizer
      日本流体力学会年会2020
    • Related Report
      2020 Annual Research Report
  • [Presentation] Adjoint-based olfactory search algorithm in turbulent environments2019

    • Author(s)
      Yosuke Hasegawa
    • Organizer
      International Workshop on Data-driven Modeling and Optimization in Fluid Mechanics
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Comparison of Multi-scale Models for Blood Flow in Zebrafish Brain2019

    • Author(s)
      Yin, M., Zheng, X., Blumers, A., Nakakura, M., Nakajima, H., Hasegawa, Y., Karniadakis, G.
    • Organizer
      72nd Annual Meeting of the APS Division of Fluid Dynamics
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Numerical study on Hemodynamics of brain vasculature in eartly ebrafish life2019

    • Author(s)
      Yin, M., Zheng, X., Blumers, A., Nakakura, M., Nakajima, H., Hasegawa, Y., Karniadakis, G.
    • Organizer
      Biomedical Engineering Society 2019 (BMES2019)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Adjoint-based shape optimization of heat transfer surfaces in turbulent flows with DNS-RANS hybrid approach2019

    • Author(s)
      Kametani, Y., Hasegawa, Y.
    • Organizer
      The 7th Asian Symposium on Computational Heat Transfer and Fluid Flow 2019 (ASCHT2019)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Adjoint-based optimization of heat transfer surface in latent heat thermal storage system2019

    • Author(s)
      Kametani, Y., Yuasa, T., Matsumoto, K., Shoda, T., Ishii, M., and Hasegawa, Y.
    • Organizer
      The 2nd Pacific Rim Thermal Engineering Conference (PRTEC2019)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Experimental study on evaporation process and particle sedimentation in pendant droplets2019

    • Author(s)
      Tamura, T., Wang,H., Tsukahara, T., Osawa, T., Hasegawa, Y.
    • Organizer
      The 2nd Pacific Rim Thermal Engineering Conference (PRTEC2019)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Optimal large-scale control input for drag redcuction in turbulent channel flow2019

    • Author(s)
      Itoh, T., Hasegawa, Y.
    • Organizer
      The 2nd Pacific Rim Thermal Engineering Conference (PRTEC2019)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Turbulent flow estimation based on wall measurements by using machine learning techniques2019

    • Author(s)
      Liu, Z., Hasegawa, Y.
    • Organizer
      The 2nd Pacific Rim Thermal Engineering Conference (PRTEC2020)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] A pumpless mixer for efficient captureing of samll particles utlizing vibration-induced flow2019

    • Author(s)
      Kanji Kaneko,Taiji Okano, Takeshi Hayakawa, Yosuke Hasegawa, and Hiroaki Suzuki
    • Organizer
      The 32nd International Conference on Micro Electro Mechanical Systems (MEMS 2019)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Adjoint-based shape optimization for complex heat transfer surfaces in turbulent flows2019

    • Author(s)
      Yukinori Kametani, Yosuke Hasegawa
    • Organizer
      European Drag Reduction and Flow Control Meeting (EDRFCM2019)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Dissimilar response of the streamwise velocity and temperature field under traveling wave-like wall blowing and suction2019

    • Author(s)
      Arjun J. Kaithakkal, Yukinori Kametani, Yosuke Hasegawa
    • Organizer
      European Drag Reduction and Flow Control Meeting (EDRFCM2019)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Adjoint-based shape optimization for turbulent concvective heat transfer with a hybrid RANS-DNS approach2018

    • Author(s)
      Yukinori Kametani, Yosuke Hasegawa
    • Organizer
      16th International Heat Transfer Conerence (IHTC16)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Optimal control of heat and fluid flow in a channel at low Reynold's numbers2018

    • Author(s)
      Arjun J. Kaithakkal, Yukinori Kametani, Yosuke Hasegawa
    • Organizer
      16th International Heat Transfer Conerence (IHTC16)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Experimental assesment of heat transfer and pressure loss characteristics of optimzal heat transfer surfaces2018

    • Author(s)
      Yukinori Kametani, Yutaka Fukuda, Takayuki Osawa, Yosuke Hasegawa
    • Organizer
      12th European Fluid Mechanics Conference (EFMC12)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Flow estimation behind a cylinder using data assimilation2018

    • Author(s)
      Yuki Akechi, Yuya Yamada, Takayuki Osawa, Takahiro Tsukahara, Yosuke Hasegawa
    • Organizer
      12th European Fluid Mechanics Conference (EFMC12)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] A numerical model for three-dimensional analysis of vibratino-induced flow2018

    • Author(s)
      Kanji Kaneko, Takayuki Osawa, Yukinori Kametani, Yosuke Hasegawa, and Hiroaki Suzuki
    • Organizer
      The 22nd International Conference on Miniaturized Systems for Chemistry and Life Sciences (microTAS 2018)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Turbulent Dissipation in Drag Reduced Flows2018

    • Author(s)
      Bettina Frohnapfel, Andrea Cimarelli, Yosuke Hasegawa, Maurizio Quadrio, Davide Gatti
    • Organizer
      Turbulent Dissipation in Drag Reduced Flows
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Book] マイクロ・ナノ熱工学の進展 (第4篇3章(4)「生体内毛細血管網の輸送特性と分岐形態最適化」分担執筆)2021

    • Author(s)
      長谷川洋介,中山雅敬
    • Total Pages
      8
    • Publisher
      エヌ・ティー・エス
    • ISBN
      9784860437220
    • Related Report
      2020 Annual Research Report
  • [Book] 生物の優れた機能から着想を得た新しいものづくり2018

    • Author(s)
      長谷川洋介,中山雅敬
    • Publisher
      シーエムシー出版
    • ISBN
      9784781313542
    • Related Report
      2018 Research-status Report
  • [Patent(Industrial Property Rights)] 伝熱装置2018

    • Inventor(s)
      長谷川洋介
    • Industrial Property Rights Holder
      長谷川洋介
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2018-150502
    • Filing Date
      2018
    • Related Report
      2018 Research-status Report

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Published: 2018-01-25   Modified: 2022-01-27  

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