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Elucidation of the function of a conserved pyridoxal phosphate-binding protein involved in the homeostasis of amino acid metabolism

Research Project

Project/Area Number 17KK0153
Research Category

Fund for the Promotion of Joint International Research (Fostering Joint International Research)

Allocation TypeMulti-year Fund
Research Field Applied biochemistry
Research InstitutionNagoya University

Principal Investigator

Ito Tomokazu  名古屋大学, 生命農学研究科, 講師 (90584970)

Project Period (FY) 2018 – 2020
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥14,560,000 (Direct Cost: ¥11,200,000、Indirect Cost: ¥3,360,000)
KeywordsビタミンB6 / ピリドキサールリン酸 / ピリドキシンリン酸 / YggS/PROSC / PLPBP / ピリドキサールレダクターゼ / アミノ酸 / ビタミンB6 / 恒常性
Outline of Final Research Achievements

Loss or mutation of YggS/PROSC protein, a pyridoxal phosphate (PLP)-binding protein, disrupts a wide variety of metabolic systems, especially amino acid and vitamin B6 metabolism. This study has demonstrated that the YggS/PPROSC protein plays an important role in the homeostasis of vitamin B6, especially pyridoxine phosphate (PNP), in various organisms. In E. coli, the abnormal accumulation of PNP inhibits the glycine cleavage system and various metabolic pathways, including amino acid metabolism. The present study suggests that the YggS/PROSC protein may be involved in the conversion process between PLP and pyridoxamine phosphate (PMP).

Academic Significance and Societal Importance of the Research Achievements

本研究では、多くの生物におけるビタミンB6・アミノ酸代謝ホメオスタシスの鍵因子であるYggS/Proscタンパク質の生理機能の解析に取り組んだ。ヒトを含め、多くの生物で認められる当該タンパク質の欠損により引き起こされる多岐にわたる影響が、補酵素機能を有さないピリドキシンリン酸の異常蓄積に起因する可能性を提示し、また、当該タンパク質がピリドキサールリン酸・ピリドキサミンリン酸間のサイクリング反応に関与する可能性が示された。また、ピリドキサール→ピリドキシンの変換を触媒するピリドキサールレダクターゼが、現在考えられている以上に保存されたビタミンB6代謝経路である可能性も示された。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (14 results)

All 2021 2020 2019 2018

All Int'l Joint Research (1 results) Journal Article (5 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 5 results) Presentation (8 results) (of which Invited: 3 results)

  • [Int'l Joint Research] University of Georgia(アメリカ合衆国)2018

    • Year and Date
      2018-07-15
    • Related Report
      2020 Annual Research Report
  • [Journal Article] The Role of YggS in Vitamin B6 Homeostasis in Salmonella enterica Is Informed by Heterologous Expression of Yeast SNZ32020

    • Author(s)
      Vu Huong N.、Ito Tomokazu、Downs Diana M.
    • Journal Title

      Journal of Bacteriology

      Volume: 202 Issue: 22

    • DOI

      10.1128/jb.00383-20

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Mechanism of eukaryotic serine racemase-catalyzed serine dehydration2020

    • Author(s)
      Ito Tomokazu、Matsuoka Mai、Goto Masaru、Watanabe Soichiro、Mizobuchi Taichi、Matsushita Kazuma、Nasu Ryoma、Hemmi Hisashi、Yoshimura Tohru
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

      Volume: 1868 Issue: 9 Pages: 140460-140460

    • DOI

      10.1016/j.bbapap.2020.140460

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Pyridoxal reductase, PdxI, is critical for salvage of pyridoxal in Escherichia coli2020

    • Author(s)
      Ito Tomokazu、Downs Diana M.
    • Journal Title

      Journal of Bacteriology

      Volume: 202 Issue: 12

    • DOI

      10.1128/jb.00056-20

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Inhibition of glycine cleavage system by pyridoxine 5′‐phosphate causes synthetic lethality in glyA yggS and serA yggS in Escherichia coli2020

    • Author(s)
      Ito Tomokazu、Hori Ran、Hemmi Hisashi、Downs Diana M.、Yoshimura Tohru
    • Journal Title

      Molecular Microbiology

      Volume: 113 Issue: 1 Pages: 270-284

    • DOI

      10.1111/mmi.14415

    • NAID

      120006812139

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Conserved Pyridoxal 5'-Phosphate Binding Protein YggS Impacts Amino Acid Metabolism through Pyridoxine 5'-Phosphate in Escherichia coli.2019

    • Author(s)
      Ito T, Yamamoto K, Hori R, Yamauchi A, Downs DM, Hemmi H, Yoshimura T.
    • Journal Title

      Appl Environ Microbiol.

      Volume: 11 Issue: 11

    • DOI

      10.1128/aem.00430-19

    • Related Report
      2019 Research-status Report 2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] 哺乳類のPLレダクターゼ同定に向けた取り組み2021

    • Author(s)
      西山尚来、伊藤智和、邊見久、吉村徹
    • Organizer
      日本農芸化学会2021年度大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] アミノ酸・ビタミンB6恒常性に関与する新奇ビタミンB6結合タンパク質2020

    • Author(s)
      伊藤智和
    • Organizer
      日本ビタミン学会第72回大会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] D-アミノ酸生産酵素の新規in vivoスクリーニング法2020

    • Author(s)
      伊藤智和、吉村徹
    • Organizer
      日本分生生物学会2020年度大会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 高度に保存されたビタミン B6 結合タンパク質の機能解析と 応用展開2020

    • Author(s)
      伊藤智和
    • Organizer
      日本農芸化学会2021年度大会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] YggS/PROSCタンパク質の欠損によるpyridoxine 5'-phosphate蓄積の要因2020

    • Author(s)
      小河ほのか、伊藤智和、邊見久、吉村徹
    • Organizer
      日本農芸化学会中部支部第187回支部例会
    • Related Report
      2020 Annual Research Report
  • [Presentation] YggS/PROSCタンパク質ファミリーによるビタミンB6の恒常性維持機構2020

    • Author(s)
      小河ほのか、伊藤智和、邊見久、吉村徹
    • Organizer
      日本ビタミン学会第72回大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] YggS/PROSCタンパク質ファミリーによるビタミンB6恒常性維持機構2020

    • Author(s)
      小河ほのか、伊藤智和、邊見久、吉村 徹
    • Organizer
      日本農芸化学会 2020年度大会
    • Related Report
      2019 Research-status Report
  • [Presentation] YggS/PROSCファミリータンパク質のアミノ酸代謝制御機構の解析2019

    • Author(s)
      山本佳奈、伊藤智和、邊見久、吉村徹
    • Organizer
      第91回日本生化学会大会
    • Related Report
      2018 Research-status Report

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Published: 2018-01-25   Modified: 2022-01-27  

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