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Analysis of rewiring of genetic pathways by comparison and modification of nematode genomes

Research Project

Project/Area Number 17KT0013
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeMulti-year Fund
Section特設分野
Research Field Constructive Systems Biology
Research InstitutionTohoku University

Principal Investigator

Sugimoto Asako  東北大学, 生命科学研究科, 教授 (80281715)

Co-Investigator(Kenkyū-buntansha) 菊地 泰生  宮崎大学, 医学部, 准教授 (20353659)
Project Period (FY) 2017-07-18 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥18,720,000 (Direct Cost: ¥14,400,000、Indirect Cost: ¥4,320,000)
Fiscal Year 2019: ¥6,110,000 (Direct Cost: ¥4,700,000、Indirect Cost: ¥1,410,000)
Fiscal Year 2018: ¥6,110,000 (Direct Cost: ¥4,700,000、Indirect Cost: ¥1,410,000)
Fiscal Year 2017: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Keywords遺伝子回路 / ゲノム進化 / 線虫 / 細胞極性 / 生殖顆粒 / C.elegans / 遺伝子 / rewiring / C. elegans
Outline of Final Research Achievements

In this study, we characterized the rewiring of gene circuits using three nematode species (C. elegans, C. inopinata, and P. pacificus), by comparative genomics and gene function analysis. We focused on the gene circuit rewiring of the establishment of cell polarity and germ granule formation in zygotes. We found that the loss or acquisition of key genes led to the rewiring of gene circuits at a high frequency, even in closely related species. In particular, we found a new phenomenon in the process of cell polarity establishment in P. pacificus zygotes; an actin aggregate is involved in the reorientation of the mitotic spindle, which is not observed in C. elegans.

Academic Significance and Societal Importance of the Research Achievements

生物が進化する過程では、生命現象を制御する遺伝子回路の変化が重要だと考えられているが、そのプロセスについては十分な理解が進んでいない。本研究では、3種の近縁の線虫種のゲノム比較と遺伝子操作により、遺伝子の喪失や獲得により個体発生の素過程が予想以上に急激に変化し得ることを明らかにした。これは生物進化プロセスの遺伝子レベルでの理解に貢献する成果である。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (21 results)

All 2019 2018 2017 Other

All Int'l Joint Research (3 results) Journal Article (1 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (17 results) (of which Int'l Joint Research: 6 results,  Invited: 2 results)

  • [Int'l Joint Research] マックスプランク発生生物学研究所(ドイツ)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Max-Planck Institute(ドイツ)

    • Related Report
      2018 Research-status Report
  • [Int'l Joint Research] Max Planck Institute(ドイツ)

    • Related Report
      2017 Research-status Report
  • [Journal Article] Biology and genome of a newly discovered sibling species of Caenorhabditis elegans2018

    • Author(s)
      Kanzaki N, Tsai IJ, Tanaka R, Hunt VL, Liu D, Tsuyama K, Maeda Y, Namai S, Kumagai R, Tracey A, Holroyd N, Doyle SR, Woodruff GC, Murase K, Kitazume H, Chai C, Akagi A, Panda O, Ke HM, Schroeder FC, Wang J, Berriman M, Sternberg PW, Sugimoto A, Kikuchi T.
    • Journal Title

      Nature Communications

      Volume: 9 Issue: 1 Pages: 3216-3216

    • DOI

      10.1038/s41467-018-05712-5

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Early embryogenesis of C. inopinata, a sibling species of C. elegans2019

    • Author(s)
      大村 駿、杉本 亜砂子
    • Organizer
      線虫研究の未来を創る会2019
    • Related Report
      2019 Annual Research Report
  • [Presentation] Evolutionary Cell Biological Analysis of Germ Granules using C. elegans and Closely Related Species P. pacificus2019

    • Author(s)
      野呂 美波、杉本 亜砂子
    • Organizer
      線虫研究の未来を創る会2019
    • Related Report
      2019 Annual Research Report
  • [Presentation] Elucidation of genomic changes that cause difference of sex determination among nematode species2019

    • Author(s)
      畑中 龍平、杉本 亜砂子
    • Organizer
      線虫研究の未来を創る会2019
    • Related Report
      2019 Annual Research Report
  • [Presentation] 線虫におけるゲノムスケール変化と表現型進化2019

    • Author(s)
      杉本 亜砂子
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Early embryogenesis of C. inopinata, a sibling species of C.elegans2019

    • Author(s)
      Shun Oomura, Asako Sugimoto
    • Organizer
      22nd International C.elegans Conference
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] An actin patch on the posterior cortex contributes to spindle displacement in Pristionchus pacificus zygotes2018

    • Author(s)
      Daichi Sasaki
    • Organizer
      The 8th Asia-Pacific C.elegans meeting
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Assembly mechanism of germ granules in Pristionchus pacificus is distinct from that in Caenorhabditis elegans2018

    • Author(s)
      Bang Uikyu, Satoshi Namai, and Asako Sugimoto
    • Organizer
      The 8th Asia-Pacific C.elegans meeting
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Caenorhabditis elegansの近縁種における遺伝子操作法の開発2018

    • Author(s)
      春田 奈美、生井 聡史、津山 研二、杉本 亜砂子
    • Organizer
      2018年度日本線虫学会定期大会(第26回大会)
    • Related Report
      2018 Research-status Report
  • [Presentation] C. elegansとその近縁種P.pacificusを用いた生殖顆粒の進化 細胞生物学的解析2018

    • Author(s)
      Bang Uikyu、生井 聡史、杉本 亜砂子
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] 中心体形成に必須なC.elegans SPD-5のin vivoドメイン解析2018

    • Author(s)
      中條 桃江、狩野 ひかる、春田 奈美、杉本 亜砂子
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] 線虫C. elegansにおけるチューブリンアイソタイプの発現パ ターンおよび機能の網羅的解析2018

    • Author(s)
      西田 桂、土屋 賢汰、小日向 寛之、小野寺 静、春田 奈美、杉本 亜砂子
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] Distinct regulatory mechanisms control the first asymmetric cell division of Pristionchus pacificus and Caenorhabditis elegans2018

    • Author(s)
      杉本 亜砂子
    • Organizer
      The 2nd Indian C. elegans Meeting(India)
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Comparative analysis of polarity establishment mechanisms in C. elegans and P. pacificus zygotes2017

    • Author(s)
      Daichi Sasaki, Satoshi Namai, Asako Sugimoto
    • Organizer
      2017年度生命科学系学会合同年次大会(CnBio2017)
    • Related Report
      2017 Research-status Report
  • [Presentation] 線虫C. elegansとP. pacificus初期胚の細胞極性化機構の比較解析2017

    • Author(s)
      佐々木 大地、生井 聡史、杉本 亜砂子
    • Organizer
      2017年度生命科学系学会合同年次大会(CnBio2017)
    • Related Report
      2017 Research-status Report
  • [Presentation] 線虫C. elegansとP. pacificus初期胚の細胞極性化機構の比較解析2017

    • Author(s)
      佐々木大地、生井聡史、杉本亜砂子
    • Organizer
      日本動物学会・平成29年度東北支部大会
    • Related Report
      2017 Research-status Report
  • [Presentation] Evolutionary insights into the C. elegans biology from the morphology, ecology and genome of the sister species Caenorhabditis sp. 342017

    • Author(s)
      T. Kikuchi; I. Tsai; R. Tanaka; G. Woodruff; J. Wang; M. Berriman; P. Sternberg ; A. Sugimoto; N. Kanzak
    • Organizer
      21st International C. elegans Conference (USA)
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Establishing genetic techniques to study Caenorhabditis sp. 34, a sister species of C. elegans2017

    • Author(s)
      Asako Sugimoto; Kenji Tsuyama; Yuki Hoshi; Satoshi Namai; Ryohei Kumagai; Natsumi Kanzaki; Taisei Kikuchi
    • Organizer
      21st International C. elegans Conference (USA)
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research

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Published: 2017-07-21   Modified: 2021-02-19  

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