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Fundamental analysis for the bottom-up type reconstitute of RNA transport across the nuclear pore complex

Research Project

Project/Area Number 17KT0113
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section特設分野
Research Field Constructive Systems Biology
Research InstitutionUniversity of Hyogo

Principal Investigator

Yoshihisa Tohru  兵庫県立大学, 生命理学研究科, 教授 (60212312)

Project Period (FY) 2017-07-18 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2019: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2018: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2017: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords核膜孔複合体 / 核-細胞質間輸送 / RNA / ヒドロゲル / nucleoporin / 透過障壁 / 核–細胞質間輸送 / 核―細胞質間輸送 / 核-細胞質間輸送
Outline of Final Research Achievements

To establish the in vitro system to analyze transport of RNAs through nuclear pore, we tried to construct nuclear porin (Nup) hydrogels and to set up the RNA diffusion/ transport assay with the hydrogel. We prepared various recombinant proteins, such as various Nup, transport carriers, etc. However, we could not establish appropriate conditions to prepare Nup hydrogel blocks or gel sheets, which are essential for the assay. We also tried to synthesize artificial Nup-like hydrogels by introducing the benzyl group into polyacrylamide gels, but we could not find appropriate conditions for preparing such artificial hydrogels with an acrylamide derivative partly because of high hydrophobicity of an acrylamide derivative with a benzyl group.

Academic Significance and Societal Importance of the Research Achievements

本研究はRNAの核膜孔透過機構を解析する系の確立を目指したが、残念なことに十分な成果を得るには至らなかった。核膜孔構成タンパク質を用いたヒドロゲル、さらには、人工的構造からなるヒドロゲルを用いて、生体内と同様のRNAに対する透過障壁あるいは選択的輸送場を解析する実験系が確立すれば、今までその化学的な特徴が不明であったRNAの核-細胞質間輸送機構に多くの光を当てることが出来る。研究期間終了時点では、当初の目的を達することが出来なかったが、現在、問題点を分析して研究を継続している。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (21 results)

All 2019 2018 2017

All Journal Article (5 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 4 results,  Open Access: 4 results) Presentation (15 results) (of which Int'l Joint Research: 3 results,  Invited: 3 results) Book (1 results)

  • [Journal Article] Impact of intron removal from tRNA genes on Saccharomyces cerevisiae2019

    • Author(s)
      Hayashi Sachiko、Mori Shunsuke、Suzuki Takeo、Suzuki Tsutomu、Yoshihisa Tohru
    • Journal Title

      Nucleic Acids Research

      Volume: - Issue: 11 Pages: 5936-5949

    • DOI

      10.1093/nar/gkz270

    • Related Report
      2019 Annual Research Report 2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Editorial: Current Advances in the Research of RNA Regulatory Enzymes2019

    • Author(s)
      Kanai Akio、Yoshihisa Tohru
    • Journal Title

      Frontiers in Genetics

      Volume: 10 Pages: 973-973

    • DOI

      10.3389/fgene.2019.00973

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Maturation of tRNAs and their dynamics between the nucleus and the cytoplasm<b> </b>2018

    • Author(s)
      Yoshihisa Tohru
    • Journal Title

      PLANT MORPHOLOGY

      Volume: 30 Issue: 1 Pages: 37-58

    • DOI

      10.5685/plmorphol.30.37

    • NAID

      130007622424

    • ISSN
      0918-9726, 1884-4154
    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Life of proteins: from nascent chain to degradation2018

    • Author(s)
      Herrmann Johannes M.、Carvalho Pedro、Hayer-Hartl Manajit、Yoshihisa Tohru
    • Journal Title

      Nature Structural & Molecular Biology

      Volume: 25 Issue: 11 Pages: 996-999

    • DOI

      10.1038/s41594-018-0150-5

    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Journal Article] The neck deformation of <i>Lacrymaria olor</i> depending upon cell states2018

    • Author(s)
      Ryuji Yanase, Yukinori Nishigami, Masatoshi Ichikawa, Tohru Yoshihisa, Seiji Sonobe
    • Journal Title

      Journal of Protistology

      Volume: 51 Issue: 0 Pages: 1-6

    • DOI

      10.18980/jop.e001

    • NAID

      130006470716

    • ISSN
      2433-412X
    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Intron removal from tRNALeuCAA genes in S. cerevisiae2019

    • Author(s)
      ○Sachiko Hayashi, Yuichi Shichino, Shintaro Iwasaki, and Tohru Yoshihisa
    • Organizer
      The 24th RNA Meeting
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] How to measure absolute quantity of tRNAs.2019

    • Author(s)
      Akihisa Nagai, Kouhei Mori, Yuma Shiomi, and ○Tohru Yoshihisa
    • Organizer
      第19回日本蛋白質学会・第71回日本細胞生物学会合同年次大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 出芽酵母におけるシステマティックな遺伝子改変をベースにしたtRNA機能の解析2019

    • Author(s)
      林 紗千子、七野 悠一、池田 彩乃、松井 将也、鈴木 健夫、鈴木 勉、岩崎 信太郎、○吉久 徹
    • Organizer
      第21回日本RNA学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 出芽酵母におけるtRNA発現解析2019

    • Author(s)
      ○永井 陽久、塩見 由麻、森 滉平、吉久 徹
    • Organizer
      第21回日本RNA学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] モノソーム集積型mRNAの翻訳制御機構とミトコンドリアターゲティングに関する解析2019

    • Author(s)
      ○岩元 夏純、林 紗千子、吉久 徹
    • Organizer
      第42会日本分子生物学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Ic-tRNA leads ribosome biogenesis and mitochondrial functions2019

    • Author(s)
      Sachiko Hayashi, Yuichi Shichino, Shintaro Iwasaki, and Tohru Yoshihisa
    • Organizer
      第42会日本分子生物学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Measurement and alteration of tRNA repertoires in Saccharomyces cerevisiae.2018

    • Author(s)
      Akihisa Nagai, Kohei Mori, Yuma Shiomi, and Tohru Yoshihisa
    • Organizer
      International Symposium on “Proteins; from the Cradle to the Grave” (Shiga, Japan)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] OTTER, a new method for measuring absolute quantity of tRNAs.2018

    • Author(s)
      Akihisa Nagai, Kohei Mori, Yuma Shiomi, and Tohru Yoshihisa
    • Organizer
      The 23rd Annual Meeting of the RNA Society (Berkeley, USA)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] How to measure absolute quantity of tRNAs.2018

    • Author(s)
      Akihisa Nagai, Kohei Mori, Yuma Shiomi, and Tohru Yoshihisa
    • Organizer
      第70回日本細胞生物学会・第51回日本発生生物学会合同大会
    • Related Report
      2018 Research-status Report
  • [Presentation] 出芽酵母におけるtRNAレパートリーの解析と改変2018

    • Author(s)
      永井陽久、塩見由麻、森滉平、池田彩乃、佐藤友衣子、河野龍之進、荒井麻里、粕谷日向子、吉久徹
    • Organizer
      第20回日本RNA学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] Analysis of dynamics of tRNAs in yeast, where and how much.2018

    • Author(s)
      Tohru Yoshihisa
    • Organizer
      理研シンポジウム「Recent Progress in tRNA Biology and Translation」
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] Absolute quantification of tRNA isodecoders in Saccharomyces cerevisiae2017

    • Author(s)
      Akihisa Nagai, Kouhei Mori, Tohru Yoshihisa
    • Organizer
      生命科学系学会合同年次大会
    • Related Report
      2017 Research-status Report
  • [Presentation] Impact of intron removal from tRNA genes in S. cereviase2017

    • Author(s)
      Sachiko Hayashi, Tohru Yoshihisa
    • Organizer
      生命科学系学会合同年次大会
    • Related Report
      2017 Research-status Report
  • [Presentation] 核を巡るtRNAのダイナミクス2017

    • Author(s)
      吉久徹
    • Organizer
      日本植物学会
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] プロテオーム形成を影から支えるtRNAレパートリーを解析する2017

    • Author(s)
      永井陽久、塩見由麻、森滉平、佐藤友衣子、河野龍之進、林紗千子、吉久徹
    • Organizer
      植物RNA研究ネットワークシンポジウム
    • Related Report
      2017 Research-status Report
    • Invited
  • [Book] Current Advances in the research of RNA regulatory enzymes.2019

    • Author(s)
      Akio Kanai and Tohru Yoshihisa (editors).
    • Total Pages
      131
    • Publisher
      Frontiers Media SA
    • ISBN
      9782889632152
    • Related Report
      2019 Annual Research Report

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Published: 2017-07-21   Modified: 2021-02-19  

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