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超原子価硫黄原子を有する超分子複合体蛋白質による過酸化水素還元反応の制御機構解明

Research Project

Project/Area Number 18054019
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionOsaka University

Principal Investigator

井上 豪  Osaka University, 大学院・工学研究科, 准教授 (20263204)

Co-Investigator(Kenkyū-buntansha) 中村 努  独立行政法人産業技術総合研究所, 企画本部, 企画主幹 (10357668)
石川 一彦  独立行政怯人産業技術総合研究所, セルエンジニアリング研究部門, 研究員 (90356436)
甲斐 泰  福井工業大学, 環境生命未来工学科, 教授 (40029236)
松村 浩由  大阪大学, 大学院・工学研究科, 助教 (30324809)
Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥5,300,000 (Direct Cost: ¥5,300,000)
Fiscal Year 2007: ¥3,100,000 (Direct Cost: ¥3,100,000)
Fiscal Year 2006: ¥2,200,000 (Direct Cost: ¥2,200,000)
Keywords超分子複合体 / チオレドキシンペルオキシダーゼ / 中間体構造 / X線結晶構造解析 / 反応機構を解明
Research Abstract

超好熱始原菌Aeropyrum pernix K1株由来のペルオキシレドキシン(Prx)であるThioredoxin Peroxidase(ApTPx)は、チオール依存型のペルオキシダーゼであり、過酸化水素H_2O_2やalkylperoxideを水やアルコールに還元する働きを持つ。ApTPxは、子量20万の10量体蛋白質であり、プロトマー1分子中に3つのシステイン残基(C50,C207,及びC213)を持ち、たとえば、過酸化水素を水に還元する反応を行う。これまでの研究から、ApTPxのアミノ酸配列は1-CysのPrxと相同性が高いのに対し、その反応機構は2-CysのPrxと同様に2つのシステイン残基(C50及びC213)が反応に必須であることが報告されている。
本研究課題では、変異体C50S,C20,7S,C213Sの結晶中で過酸化水素と反応させ、中間体構造を低温でトラップしてX線構造解析を行う方法で、ApTPxによるH_2O_2の還元機構の詳細の解明を目指した。その結果、C50SおよびC213SについてX線回折強度データの収集を行い構造精密化中で反応機構に関する知見はまだ得られていないが、C207S変異体からは、Cys50がCys-SHから、Cystein sulfenic acid (Cys-SOH)の状態へと酸化され、S-OH中間体を形成し、配位子数4の硫黄原子(10-S-4)を持つ超原子価構造をとることが判明した(Proceedings of the NattionalAcademy of Sciences USA(PNAS),in press)。

Report

(2 results)
  • 2007 Annual Research Report
  • 2006 Annual Research Report
  • Research Products

    (22 results)

All 2008 2007 2006

All Journal Article (14 results) (of which Peer Reviewed: 6 results) Presentation (2 results) Book (6 results)

  • [Journal Article] Structural basis for the decarboxylation of orotidine 5' -monophosphate(OMP) by Plasmodium falciparum OMP decarboxylase.2008

    • Author(s)
      K., Tokuoka, et. al.
    • Journal Title

      The Journal of Biochemistry 143

      Pages: 69-78

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis: Implications for catalytic mechanism.2008

    • Author(s)
      H., Tamura, et. al.
    • Journal Title

      Protein Science 17

      Pages: 126-135

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Novel cation-pi interaction revealed by crystal structure of thermoalk alophilic lipase.2008

    • Author(s)
      H., Matsumura, et. al.
    • Journal Title

      PROTEINS: Structure, Function, and Bioinformatics 70

      Pages: 592-598

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effect of Solution Flow by Rotary Shaker on Protein Crystallization.2008

    • Author(s)
      R., Murai, et. al.
    • Journal Title

      Journal of Crystal Growth (in press)

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate.2008

    • Author(s)
      T., Nakamure, et. al.
    • Journal Title

      Proceedings of the National Academy of Sciences USA (in press)

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Preparation, ctystallization and preliminary crystallographic analysis of old yellow enzyme from Trypanosoma cruzi.2007

    • Author(s)
      S., Sugiyama, et. al.
    • Journal Title

      Acta Crystallographica Section F 63

      Pages: 896-898

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of intein homing endonuclease II encoded in the DNA polymerase gene from Hyperthermophilic Archaeon Thermococcus kodakaraensis strain KOD12006

    • Author(s)
      H.Matsumura, H.Takahashi, T.Inoue, T.Yamamoto, H.Hashimoto, M.Nishioka, S.Fujiwara, M.Takagi, T.Imanaka, Y.Kai
    • Journal Title

      Proteins : Structure Function, and Bioinformatics 63巻3号

      Pages: 711-715

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Structural and Functional Characterization of HQL-79, an Orally, Selective Inhibitor of Human Hematopoietic Prostaglandin D Synthase2006

    • Author(s)
      Kousuke Aritake, Yuji Kado, Tsuyoshi Inoue, Masashi Miyano, Yoshihiro Urade
    • Journal Title

      Journal of Biological Chemistry 281巻22号

      Pages: 15277-15286

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Application of Femtosecond Laser Ablation for Detaching Grown Protein Crystals from a Glass Capillary Tube2006

    • Author(s)
      M.Kashii, R.Fujisawa, H.Adachi, Y.Mori, T.Sasaki, Y.Koga, K.Takano, S.Kanaya, H.Matsumura, T.Inoue, S.Murakami, K.Sugamoto, H.Yoshikawa
    • Journal Title

      Journal of Bioscience and Bioengineering 102巻4号

      Pages: 372-374

    • NAID

      110004839458

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Effect of ultrasonic irradiation on protein crystallization2006

    • Author(s)
      K.Kakinouchi, H.Adachi, H.Matsumura, T.Inoue, S.Murakami, Y.Mori, Y.Koga, K.Takano, S.Kanaya
    • Journal Title

      Journal of Crystal Growth 292巻2号

      Pages: 437-440

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Cooling-rate screening system for determining protein crystal growth conditions2006

    • Author(s)
      R.Murai, S.Nakata, M.Kashii, H.Adachi, A.Niino, K.Takano, H.Matsumura, S.Murakami, T.Inoue, Y.Mori, T.Sasaki
    • Journal Title

      Journal of Crystal Growth 292巻2号

      Pages: 433-436

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Crystallization and preliminary crystallographic analysis of orotidine 5'-monophosphate decarboxylase from the human malaria parasite Plasmodium falciparum2006

    • Author(s)
      S.R.Krungkrai, K.Tokuoka, Y.Kusakari, T.Inoue, H.Adachi, H.Matsumura, K.Takano, S.Murakami, Y.Mori, Y.Kai, J.Krungkrai, T.Horii
    • Journal Title

      Acta Crystallographica Section F 62巻6号

      Pages: 542-545

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Purification, crystallization and preliminary X-ray diffraction of SecDF, a translocon-associated membrane protein, from Thermus thermophilus2006

    • Author(s)
      T.Tsukazaki, H.Mori, S.Fukai, T.Numata, A.Perederina, H.Adachi, H.Matsumura, K.Takano, S.Murakami, T.Inoue, Y.Mori, T.Sasaki, Dmitry, G.Vassylyev, O.Nureki, K.Ito
    • Journal Title

      Acta Crystallographica Section F 62巻4号

      Pages: 376-380

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Crystallization and preliminary X-ray analysis of the tRNA thiolation enzyme MnmA from Escherichia coli complexed with tRNA^<Glu>.2006

    • Author(s)
      T.Numata, Y.Ikeuchi, S.Fukai, H.Adachi, H.Matsumura, K.Takano, S.Murakami, T.Inoue, Y.Mori, T.Sasaki, T.Suzuki, O.Nureki
    • Journal Title

      Acta Crystallographica Section F 62巻4号

      Pages: 368-371

    • Related Report
      2006 Annual Research Report
  • [Presentation] 古細菌ペルオキシレドキシンに見られる超原子価構造2007

    • Author(s)
      井上 豪
    • Organizer
      特定領域研究「生体超分子の構造形成と機能制御の原子機構」第3回ワークショップ
    • Place of Presentation
      静岡(ホテルニューアカオ)
    • Related Report
      2007 Annual Research Report
  • [Presentation] 古細菌ペルオキシレドキシンに見られる超原子価構造2007

    • Author(s)
      井上 豪
    • Organizer
      特定領域研究「生体超分子構造]第4回公開シンポジウム
    • Place of Presentation
      大阪(千里ライフサ仁ンスセンター)
    • Related Report
      2007 Annual Research Report
  • [Book] 生物物理2007

    • Author(s)
      井上豪, 裏出良博
    • Total Pages
      8
    • Publisher
      日本生物物理学会
    • Related Report
      2006 Annual Research Report
  • [Book] ファルマシア2007

    • Author(s)
      井上豪, 福西快文, 坂田恒昭
    • Total Pages
      5
    • Publisher
      社団法人 日本薬学会
    • Related Report
      2006 Annual Research Report
  • [Book] 光学2007

    • Author(s)
      安達宏昭, 森勇介, 佐々木孝友, 高野和文, 井上豪, 松村浩由, 村上聡
    • Total Pages
      5
    • Publisher
      日本光学会
    • Related Report
      2006 Annual Research Report
  • [Book] 第5版 実験化学講座 5 化学実験のための基礎技術2006

    • Author(s)
      井上 豪, 松村浩由, 甲斐 泰
    • Total Pages
      15
    • Publisher
      丸善株式会社
    • Related Report
      2006 Annual Research Report
  • [Book] Functional and Structural Biology on the Lipo-network 20062006

    • Author(s)
      Yoshihiro Urade, Ikuko Mohri, Kosuke Aritake, Tsuyoshi Inoue, Masashi Miyano
    • Total Pages
      30
    • Publisher
      TRANSWORLD RESEARCH NETWORK
    • Related Report
      2006 Annual Research Report
  • [Book] 酵素工学ニュース2006

    • Author(s)
      安達宏昭, 森勇介, 佐々木孝友, 高野和文, 松村浩由, 井上豪, 村上聡
    • Total Pages
      5
    • Publisher
      酵素工学研究会
    • Related Report
      2006 Annual Research Report

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Published: 2006-04-01   Modified: 2018-03-28  

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