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Structure, rotation and regulation of ATP synthase(FoF1)

Research Project

Project/Area Number 18107004
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field Functional biochemistry
Research InstitutionKyoto Sangyo University (2010)
Tokyo Institute of Technology (2006-2009)

Principal Investigator

YOSHIDA Masasuke  京都産業大学, 総合生命科学部, 教授 (90049073)

Co-Investigator(Kenkyū-buntansha) HISABORI Toru  東京工業大学, 資源化学研究所, 教授 (40181094)
村上 聡  東京工業大学, 生命理工学部, 教授 (30300966)
Co-Investigator(Renkei-kenkyūsha) MURAKAMI Satoshi  東京工業大学, 生命理工学部, 教授 (30300966)
Project Period (FY) 2006 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥111,280,000 (Direct Cost: ¥85,600,000、Indirect Cost: ¥25,680,000)
Fiscal Year 2010: ¥25,480,000 (Direct Cost: ¥19,600,000、Indirect Cost: ¥5,880,000)
Fiscal Year 2009: ¥25,480,000 (Direct Cost: ¥19,600,000、Indirect Cost: ¥5,880,000)
Fiscal Year 2008: ¥25,480,000 (Direct Cost: ¥19,600,000、Indirect Cost: ¥5,880,000)
Fiscal Year 2007: ¥25,480,000 (Direct Cost: ¥19,600,000、Indirect Cost: ¥5,880,000)
Fiscal Year 2006: ¥9,360,000 (Direct Cost: ¥7,200,000、Indirect Cost: ¥2,160,000)
KeywordsATP合成 / ATP合成酵素 / F_oF_1 / モータータンパク質 / 生体エネルギー / FoF1 / F1 / モーター / F0F1 / 回転モーター / ATP / 結晶解析 / プロトン / εサブユニット / FoFl / Fl / Fo / 分子モーター
Research Abstract

We made F_1-ATPases containing one or two mutant. β subunits that have the altered catalytic kinetics. The analysis of their asymmetric stepwise rotations reveal that, when watching one. β subunit in F_1-ATPase, it binds ATP at 0°, cleaves ATP after~ 200°rotation, and undergoes the final catalytic event, presumably the product release, after~ 320°rotation. Three. β subunits carry out this cycle at 120°difference like "trolling a tune" and their cyclic inter-domain bending motions would induce the rotation of γ subunit.
Rotation of the central shaft γ subunit in a molecular motor F_1-ATPase is assumed to correlate with and probably be driven by domain motions of the three catalytic. β subunits. Here we observe directly these. β motions through an attached fluorophore, concomitantly with 80 degrees and 40 degrees substep rotations of γ in the same single molecules. We show the sequence of conformations that each β subunit undergoes in three-step bending, an approximately 40 degrees counterclockwise turn followed by two approximately 20 degrees clockwise turns, occurring in synchronization with two substep rotations of γ. The results indicate that most previous crystal structures mimic the conformational set of three β subunits in the catalytic dwells. Moreover, a previously undescribed set of β conformations, open, closed and partially closed, is revealed in the ATP-waiting dwells. The present study thus bridges the gap between the chemical and mechanical steps in F_1-ATPase.

Report

(7 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report   Self-evaluation Report ( PDF )
  • 2007 Annual Research Report
  • 2006 Annual Research Report
  • Research Products

    (34 results)

All 2010 2009 2008 2007 2006 Other

All Journal Article (22 results) (of which Peer Reviewed: 19 results) Presentation (9 results) Remarks (3 results)

  • [Journal Article] Activation and stiffness of the inhibited states of F1-ATPaseprobed by single-molecule manipulation2010

    • Author(s)
      Saita E, lino R, Suzuki T, Feniouk BA, Kinosita K Jr, Yoshida M
    • Journal Title

      J Biol Chem

      Volume: 285 Pages: 11411-11417

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Essential arginine residue of the F(o)-a subunit in F(o)F(1)-ATP synthase has a role to prevent the proton shortcut without c-ring rotation in the F(o) proton channel2010

    • Author(s)
      Mitome N, Ono S, Sato H, Suzuki T, Sone N, Yoshida M
    • Journal Title

      Biochem J

      Volume: 430 Pages: 171-177

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effect of epsilon subunit on the rotation of thermophilic Bacillus F1-ATPase.2009

    • Author(s)
      Tsumuraya M, Furuike S, Adachi K, Kinosita K Jr, Yoshida M.
    • Journal Title

      FEBS Lett 583(7)

      Pages: 1121-6

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cooperative three-step motions in catalytic subunits of F_1-ATPase correlate with 80 degrees and 40 degrees substep rotations2008

    • Author(s)
      Masaike T, Koyama-Horibe F, Oiwa K, Yoshida M, Nishizaka T
    • Journal Title

      Nat Struct Mol Biol

      Volume: 15 Pages: 1326-33

    • Related Report
      2010 Final Research Report
  • [Journal Article] Cooperative three-step motions in catalytic subunits of F1-ATPase correlate with 80 degrees and 40 degrees substep rotations2008

    • Author(s)
      Masaike T, Koyama-Horibe F, Oiwa K, Yoshida M, Nishizaka T.
    • Journal Title

      Nat Struct Mol Biol 15

      Pages: 1326-33

    • Related Report
      2008 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Temperature-sensitive reaction intermediate of F1-ATPase.2008

    • Author(s)
      Watanabe R, lino R, Shimabukuro K, Yoshida M, Noji H.
    • Journal Title

      EMBO Rep. 9(1)

      Pages: 84-90

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Axle-less Fl-ATPase rotates in the correct direction.2008

    • Author(s)
      Furuike S, Hossain MD, MakiY, Adachi K, Suzuki T, Kohori A, Itoh H, Yoshida M, Kinosita K Jr.
    • Journal Title

      Science. 319

      Pages: 955-8

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dynamic inter-subunit interactions in thermophilic F(l)-ATPase subcomplexes studied by cross-correlated relaxation-enhanced polarization transfer NMR.2008

    • Author(s)
      Kobayashi M, Yagi H, Yamazaki T, Yoshida M, Akutsu H.
    • Journal Title

      J Biomol NMR. 40(3)

      Pages: 165-74

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Temperature dependence of the rotation and hydrolysis activities of F1-ATPase.2008

    • Author(s)
      Furuike S, Adachi K, Sakaki N, Shimo-Kon R, Itoh H, Muneyuki E, Yoshida M, Kinosita K Jr.
    • Journal Title

      Biophys J 95(2)

      Pages: 761-70

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Neither Helix in the Coiled Coil Region of the Axle of F_1-ATPase Plays a Significant Role in Torque Production.2008

    • Author(s)
      Hossain, MD., Furuike, S., Maki, Y., Adachi, K, Suzuki, T., Kohori, A., Itoh, H., Yoshida, M., Kinosita K. Jr
    • Journal Title

      Biophys J 95(10)

      Pages: 4837-44

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Stepwise propagation of the ATP-induced conformational change of the F1-ATPase beta subunit revealed by NMR.2008

    • Author(s)
      Yagi H, Kajiwara N, Iwabuchi T, Izumi K, Yoshida M, Akutsu H.
    • Journal Title

      J Biol Chem. 284(4)

      Pages: 2374-812

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cooperative three-step motions in catalytic subunits of F(l)-ATPase correlate with 80 degrees and 40 degrees substep rotations.2008

    • Author(s)
      Masaike T, Koyama-Horibe F, Oiwa K, Yoshida M, Nishizaka T.
    • Journal Title

      Nat Struct Mol Biol. 15(12)

      Pages: 1326-33

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] F_1-ATPase rotates by an asymmetric, sequential mechanism using all three catalytic subunits2007

    • Author(s)
      Ariga T, Muneyuki E, Yoshida M
    • Journal Title

      Nature Struct. Mol. Biol

      Volume: 14 Pages: 841-846

    • Related Report
      2010 Final Research Report
  • [Journal Article] Structures of the thermophilic F1-ATPaseεsubunit suggesting ATP-regulated arm motion of its C-terminal domain in F12007

    • Author(s)
      Yagi H, Kajiwara N, Tanaka, Tsukihara T, Kato-Yamada Y, Yoshida M, Akutsu H
    • Journal Title

      Proc Natl Acad Sci USA

      Volume: 107 Pages: 11233-11238

    • Related Report
      2010 Final Research Report
  • [Journal Article] F_1-ATPase rotates by an asymmetric, sequential mechanism using all three catalytic subunits2007

    • Author(s)
      Ariga T, Muneyuki E, Yoshida M
    • Journal Title

      Nature Struct Mol Biol. 14

      Pages: 841-846

    • Related Report
      2008 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Structures of the thermophilic F1-ATPase ε subunit suggesting ATP-regulated arm motion of its C-terminal domain in F12007

    • Author(s)
      Yagi H, Kajiwara N, Tanaka, Tsukihara T, Kato-Yamada Y, Yoshida M, Akutsu H.
    • Journal Title

      Proc Natl Acad Sci USA 104

      Pages: 11233-11238

    • Related Report
      2008 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] M Regulatory Interplay between Proton Motive Force, ADP, Phosphate, and Subunit in Bacterial ATP Synthase2007

    • Author(s)
      Feniouk BA, Suzuki T, and Yoshida
    • Journal Title

      J. Biol. Chem. 282

      Pages: 764-772

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structures of the thermophilic F1-ATPase subunit suggesting ATP-regulated arm motion of its C-terminal domain in F12007

    • Author(s)
      Yagi H, Kajiwara N, Tanaka, Tsukihara T, Kato-Yamada Y, Yoshida M, Akutsu H.
    • Journal Title

      Proc Natl Acad Sci USA 104

      Pages: 11233-11238

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] F_1-ATPase rotates by an asymmetric, sequential mechanism using all three catalytic subunits2007

    • Author(s)
      Ariga T, Muneyuki E, Yoshida M,
    • Journal Title

      Nature Struct. Mol. Biol. 14

      Pages: 841-846

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Role of the epsilon subunit of thermophilic F1-ATPase as a sensor for ATP.2007

    • Author(s)
      Kato S, Yoshida M, Kato-Yamsda Y.
    • Journal Title

      J Biol Chem. 282(52)

      Pages: 37618-23

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Single Molecule Energetics of F1-ATPase Motor.2007

    • Author(s)
      Muneyuki E, Watanabe-Nakayama T, Suzuki T, Yoshida M, Nishizaka T, Noji H.
    • Journal Title

      Biophys J. 92(5)

      Pages: 1806-12

    • Related Report
      2006 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The product of uncI gene in F1Fo-ATP synthase operon plays a chaperone-like role to assist c-ring assembly.2007

    • Author(s)
      Suzuki T, Ozaki Y, Sone N, Feniouk BA, Yoshida M.
    • Journal Title

      Proc Natl Acad Sci USA. 104(52)

      Pages: 20776-81

    • Related Report
      2006 Annual Research Report
    • Peer Reviewed
  • [Presentation] IF1 influences on energy metabolism not only under energy restricted condition but also under normal condition2010

    • Author(s)
      藤川誠、森薫子、吉田賢右
    • Organizer
      日本分子生物学会日本生化学会大会合同学会
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2010-12-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] The Essential Arg of Foa Subunit in FoF1-ATP Synthase Ensures c-ring Rotation by Preventing a Futile Proton Shortcut2009

    • Author(s)
      Noriyo Mitome, Sakurako Ohno, Hiroki Sato, Nobuhito Sone, Toshiaru Suzuki, Masasuke Yoshida
    • Organizer
      Inovative Nanoscience of Supermolecular Motor Proteins Working In Biomembranes
    • Place of Presentation
      京都大学芝蘭会館
    • Related Report
      2009 Annual Research Report
  • [Presentation] Mechanism and regulation of F_oF_1-motor2008

    • Author(s)
      M. Yoshida
    • Organizer
      Plenary lecture at 15th Euroopean Bioenergetics Conference 2008
    • Place of Presentation
      Dublin(Ireland)
    • Year and Date
      2008-08-20
    • Related Report
      2008 Self-evaluation Report
  • [Presentation] Mechanism and regulation of F_oF_<1-> motor2008

    • Author(s)
      M. Yoshida
    • Organizer
      Plenary lecture at 15th European Bioenergetics Conference
    • Place of Presentation
      Dublin(Ireland)
    • Year and Date
      2008-07-20
    • Related Report
      2010 Final Research Report
  • [Presentation] Function of epsilon subunit in Bacillus PS3 F_oF_1-ATP synthase2008

    • Author(s)
      T. Suzuki, C. Wakabayashi, B. A. Feniouk, N. Taniguchi, M. Yoshida
    • Organizer
      15th European Bioenergetics Conference
    • Place of Presentation
      Dublin(Ireland)
    • Year and Date
      2008-07-20
    • Related Report
      2010 Final Research Report
  • [Presentation] Regulatory transition of subunit epsilon in ATP synthase from Bacillus PS32008

    • Author(s)
      B. A. Feniouk, T. Suzuki, M. Yoshida
    • Organizer
      15th European Bioenergetics Conference
    • Place of Presentation
      Dublin(Ireland)
    • Year and Date
      2008-07-20
    • Related Report
      2010 Final Research Report
  • [Presentation] Mechanism and regulation of FoF1-motor2008

    • Author(s)
      Masasuke Yoshida
    • Organizer
      EBEC 2008
    • Place of Presentation
      Trinity College, Dublin, Ireland
    • Year and Date
      2008-07-20
    • Related Report
      2008 Annual Research Report
  • [Presentation] ATP合成酵素の精製における界面活性剤の検討と変異ATP合成酵素の安定性2008

    • Author(s)
      三留規誉, 大坂谷章子, 鈴木俊治, 吉田賢右
    • Organizer
      第31回日本分子生物学会年会第81回日本生化学会大会合同大会
    • Related Report
      2010 Final Research Report
  • [Presentation] Rotary Catalysis of ATP synthase2006

    • Author(s)
      Yoshida M.
    • Organizer
      14th European Bioenergetics Conference
    • Place of Presentation
      Moscow State University
    • Year and Date
      2006-07-22
    • Related Report
      2006 Annual Research Report
  • [Remarks]

    • Related Report
      2010 Final Research Report
  • [Remarks]

    • URL

      http://www.cc.kyoto-su.ac.jp/~fmotojim/index-j.html

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://www.res.titech.ac.jp/~seibutu/main_.html

    • Related Report
      2008 Annual Research Report

URL: 

Published: 2006-04-01   Modified: 2016-04-21  

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