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Functional proteomics studies on the mechanism of differentiation of mouse embryonic stem cells

Research Project

Project/Area Number 18201039
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied genomics
Research InstitutionTokyo Metropolitan University

Principal Investigator

ISOBE Toshiaki  Tokyo Metropolitan University, 大学院・理工学研究科, 教授 (70106607)

Co-Investigator(Kenkyū-buntansha) TAKAHASHI Nobuhiro  東京農工大学, 共生科学技術研究院, 教授 (80293017)
梶 裕之  産業技術総合研究所, 糖鎖医工学研究センター, 主任研究員 (80214302)
田岡 万悟  首都大学東京, 大学院・理工学研究科, 助教 (60271160)
Co-Investigator(Renkei-kenkyūsha) KAJI Hiroyuki  (独)産業技術総合研究所, 糖鎖医工学研究センター, 主任研究員 (80214302)
TAOKA Masato  首都大学東京, 大学院・理工学研究科, 助教 (60271160)
YOSHIDA Yoko  首都大学東京, 大学院・理工学研究科, 特任助教 (00379661)
Project Period (FY) 2006 – 2008
Project Status Completed (Fiscal Year 2008)
Budget Amount *help
¥45,890,000 (Direct Cost: ¥35,300,000、Indirect Cost: ¥10,590,000)
Fiscal Year 2008: ¥10,920,000 (Direct Cost: ¥8,400,000、Indirect Cost: ¥2,520,000)
Fiscal Year 2007: ¥14,170,000 (Direct Cost: ¥10,900,000、Indirect Cost: ¥3,270,000)
Fiscal Year 2006: ¥20,800,000 (Direct Cost: ¥16,000,000、Indirect Cost: ¥4,800,000)
Keywordsプロテオーム / 発生・分化 / 幹細胞 / 機能プロテオミクス / バイオテクノロジー
Research Abstract

本研究では、再生医療や移植医療などへの応用が期待される胚性幹細胞(ES細胞)の特質や分化調節機構についての理解を深める目的で、マウスES細胞のプロテオームを最新のプロテオミクス技術で解析し、分化誘導刺激にともなう約4,000種類のタンパク質の変動を定量的に解析した。また、未分化ES細胞に特異的なタンパク質の細胞機能を解析した。本研究の成果は、ES細胞の基礎研究だけでなく、各種の方法で作成したiPS細胞の比較解析や分化状態を識別するためのバイオマーカー探索のための資源として有用と考えられる。

Report

(4 results)
  • 2008 Annual Research Report   Final Research Report ( PDF )
  • 2007 Annual Research Report
  • 2006 Annual Research Report
  • Research Products

    (28 results)

All 2008 2007 2006 Other

All Journal Article (12 results) (of which Peer Reviewed: 11 results) Presentation (8 results) Book (5 results) Remarks (1 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] Cellsurface biomarkers of embryonic stem cells2008

    • Author(s)
      Nagano K, Yoshida Y, Isobe T.
    • Journal Title

      Proteomics 8

      Pages: 4025-4035

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Liquid chromatography/mass spectrometry-based glycoproteomics technologies for cancer biomarker discovery2008

    • Author(s)
      Kaji H, Isobe T.
    • Journal Title

      Clinical Proteomics DOI 10.1007/s12014-008-9004-1

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Automated SPR-LC-MS/MS system for protein interaction analysis2008

    • Author(s)
      Hayano T, Yamauchi Y, Asano K, Tsujimura T, Hashimoto S, Isobe T, Takahashi N.
    • Journal Title

      J. Proteome Res. 9

      Pages: 4183-4190

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Association of human DNA helicase RecQ5beta with RNA polymerase II and its possible role in transcription2008

    • Author(s)
      Izumikawa K, Yanagida M, Hayano T, Tachikawa H, Komatsu W, Shimamoto A, Futami K, Furuichi Y, Shinkawa T, Yamauchi Y, Isobe T, Takahashi N.
    • Journal Title

      Biochem. J. 413

      Pages: 505-516

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Cell surface biomarkers of embryonic stem cells2008

    • Author(s)
      Nagano K.
    • Journal Title

      Proteomics 8

      Pages: 4025-4035

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Liquid chromatography /mass spectrometry-based glycoproteomics technologies for cancer biomarker discovery.2008

    • Author(s)
      Kaji H.
    • Journal Title

      Clinical Proteomics 電子出版

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Automated SPR-LC-MS/MS system for protein interaction analysis.2008

    • Author(s)
      Hayano T.
    • Journal Title

      J. Proteome Res. 9

      Pages: 4183-4190

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cell surface biomarkers of embryonic stem cells2008

    • Author(s)
      Nagano K, Yoshida Y. Isobe, T.
    • Journal Title

      Proteomics 8(印刷中)

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Proteomics reveals N-linked glycoprotein diversity in Caenorhabditis elegans and suggests an atypical translocation mechanism for integral membrane proteins2007

    • Author(s)
      Kaji H, Kamiie J, Kawakami H, Kido K, Yamauchi T, Shinkawa T, Taoka M, Takahashi N, Isobe T.
    • Journal Title

      Mol. Cell Proteomics

      Pages: 2100-2109

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Proteomics reveals N-linked glycoprotein diversity and suggests an atypical translocation mechanism for integral membrane proteins2007

    • Author(s)
      Kaji H, Isobe, T., et. al.
    • Journal Title

      Molecular and Cellular Proteomics 6

      Pages: 2100-2109

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mass spectrometric identification of N-linked glycopeptides using lectin-mediated affinity capture and glycosylation site-specific stable isotope tagging2006

    • Author(s)
      Kaji H, Yamauchi Y, Takahashi N, Isobe T.
    • Journal Title

      Nature Protocols 1

      Pages: 3019-3027

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Mass spectrometric identification of N-linked glycopeptides using lectin-mediated affinity capture and glycosylation site-specific stable isotope tagging.2006

    • Author(s)
      Kaji, H., Isobe, T.et al.
    • Journal Title

      Nature Protocols 1

      Pages: 3019-3027

    • Related Report
      2006 Annual Research Report
  • [Presentation] 代謝標識法を用いたマウスES細胞クロマチン結合タンパク質の大規模プロテオーム解析2008

    • Author(s)
      吉田陽子、鷲田元久、新川高志、谷知美、山内芳雄、礒辺俊明
    • Organizer
      第8回日本蛋白質科学会年会
    • Place of Presentation
      東京
    • Year and Date
      2008-06-10
    • Related Report
      2008 Final Research Report
  • [Presentation] Proteomic analysis of proteins associated with splicing factor-2 associated protein p32 revealed its possible involvement in human ribosome biogenesis2008

    • Author(s)
      Yoshikawa H, Kawasaki M, Komatsu W, Yanagida M, Hayano T, Izumikawa K, Ishikawa H, Shinkawa T, Yamauchi Y, Isobe T, Takahashi N.
    • Organizer
      2nd Pacific Rim Intern. Conf. on Protein Science (PRICPS) and 5th AOHUPO
    • Place of Presentation
      Cairns, Australia
    • Related Report
      2008 Final Research Report
  • [Presentation] 腫瘍バイオマーカー探索のためのグライコプロテオーム解析法2008

    • Author(s)
      梶裕之、礒辺俊明、成松久
    • Organizer
      日本ヒトプロテオーム機構第6回大会
    • Place of Presentation
      大阪
    • Related Report
      2008 Final Research Report
  • [Presentation] 代謝標識法を用いたマウスES細胞クロマチン結合タンパク質の大規模プロテオーム解析2008

    • Author(s)
      吉田陽子, 礒辺俊明ら
    • Organizer
      第8回日本蛋白質科学会年会
    • Place of Presentation
      東京 タワーホール船堀
    • Related Report
      2008 Annual Research Report
  • [Presentation] 代謝標識法を用いたマウスES細胞分化過程の大規模プロテオーム解析2007

    • Author(s)
      吉田陽子、鷲田元久、新川高志、清水祐亮、山内芳雄、礒辺俊明
    • Organizer
      第5回日本ヒトプロテオーム機構大会
    • Place of Presentation
      東京
    • Related Report
      2008 Final Research Report
  • [Presentation] プロテオミクス : タンパク質大規模解析からのアプローチ2007

    • Author(s)
      礒辺俊明
    • Organizer
      日本電気泳動学会シンポジウム
    • Place of Presentation
      横浜
    • Related Report
      2008 Final Research Report
  • [Presentation] 代謝標識法を用いたマウスES細胞分化過程の大規模プロテオーム解析2007

    • Author(s)
      吉田陽子、礒辺俊明, ら
    • Organizer
      日本ヒトプロテオーム機構第5回大会
    • Place of Presentation
      東京 日本科学未来館
    • Related Report
      2007 Annual Research Report
  • [Presentation] N型糖タンパク質の大規模同定と変動解析法の開発2006

    • Author(s)
      梶裕之、佐々木明子、山内芳雄、新川高志、礒辺俊明
    • Organizer
      第6回日本蛋白質科学会年会
    • Place of Presentation
      京都
    • Related Report
      2008 Final Research Report
  • [Book] Proteomic Biology using LC-MS : Large-scale Analysis of Cellular Dynamics and Function2007

    • Author(s)
      Takahashi N, Isobe T.
    • Total Pages
      254
    • Publisher
      Wiley-Interscience
    • Related Report
      2008 Final Research Report
  • [Book] 分子間相互作用解析ハンドブック2007

    • Author(s)
      礒辺俊明、中山敬一、伊藤隆司(編)
    • Total Pages
      286
    • Publisher
      羊土社
    • Related Report
      2008 Final Research Report
  • [Book] Proteomic biology using LC-MS; Large-scale Analysis of Cellular Dynamics and Function2007

    • Author(s)
      Takahashi N. and Isobe T.
    • Total Pages
      254
    • Publisher
      Wiley-Interscience
    • Related Report
      2007 Annual Research Report
  • [Book] プロテオミクスの細胞機能解析への挑戦2006

    • Author(s)
      礒辺俊明、高橋信弘(編)
    • Total Pages
      130
    • Publisher
      細胞工学
    • Related Report
      2008 Final Research Report
  • [Book] 細胞工学「プロテオミクスの細胞機能解析への挑戦」2006

    • Author(s)
      磯辺俊明ら(編)
    • Total Pages
      130
    • Publisher
      秀潤社
    • Related Report
      2006 Annual Research Report
  • [Remarks]

    • URL

      http://www.sci.metro-u.ac.jp/proteomicslab/

    • Related Report
      2008 Final Research Report
  • [Patent(Industrial Property Rights)] 糖ペプチドの糖鎖結合部位特定方法2008

    • Inventor(s)
      梶裕之、山内芳雄、礒辺俊明
    • Industrial Property Rights Holder
      梶裕之、山内芳雄、礒辺俊明
    • Filing Date
      2008-11-21
    • Related Report
      2008 Final Research Report
  • [Patent(Industrial Property Rights)] 糖ペプチドの糖鎖結合部位特定方法2008

    • Inventor(s)
      梶裕之, 山内芳雄, 礒辺俊明
    • Industrial Property Rights Holder
      梶裕之, 山内芳雄, 礒辺俊明
    • Acquisition Date
      2008-11-21
    • Related Report
      2008 Annual Research Report

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Published: 2006-04-01   Modified: 2016-04-21  

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