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Membrane-Transport Signaling Involving the GTPase Cycle of G proteins

Research Project

Project/Area Number 18207008
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Functional biochemistry
Research InstitutionThe University of Tokyo

Principal Investigator

KATADA Toshiaki  The University of Tokyo, Graduate School of Pharmaceutical Sciences, Professor (10088859)

Co-Investigator(Kenkyū-buntansha) KONTANI Kenji  The University of Tokyo, Graduate School of Pharmaceutical Sciences, Associate Professor (30302615)
FUKUYAMA Masamitsu  The University of Tokyo, Graduate School of Pharmaceutical Sciences, Associate Professor (20422389)
KAJIHO Hiroaki  The University of Tokyo, Graduate School of Pharmaceutical Sciences, Associate Professor (70401221)
KOBAYASHI Tetsuo  The University of Tokyo, Graduate School of Pharmaceutical Sciences, Associate Professor (80433994)
Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥49,790,000 (Direct Cost: ¥38,300,000、Indirect Cost: ¥11,490,000)
Fiscal Year 2007: ¥24,050,000 (Direct Cost: ¥18,500,000、Indirect Cost: ¥5,550,000)
Fiscal Year 2006: ¥25,740,000 (Direct Cost: ¥19,800,000、Indirect Cost: ¥5,940,000)
KeywordsSignal transduction / Protein / Gene / Genome project / G protein / GTPase cycle
Research Abstract

G proteins, which cycle between the two different conformations of GTP- and GDP-bound states, play important roles as a "molecular switch" in many intracellular signaling pathways. The G protein families include 1) translation factors involved in protein synthesis and mRNA degradation, 2) trimeric G proteins, and 3) small GTPases. The small GTPases, such as Ras, Rab, Arf, and Rho/Rac family, are involved in the regulation of cell growth and differentiation, intracellular vesicle trafficking, and cell shape and adhesion. However, there are still many other small GTPases, of which functions are unknown. In this study, we have identified and characterized novel small GTPases exhibiting unique biochemical properties or tissue expression.
1. The Arl8 GTPase was essential for lysosome biogenesis in the macrophage-like coelomocytes of C. elegans: ARL-8 localized primarily to lysosomes, and a deletion mutant of arl-8 displayed an increase in number of lysosomes that were small in size and non-a … More cidic. Extracellular macromolecules were endocytosed and transported through endosomes in arl-8 mutant coelomocytes, but its degradation was markedly reduced. Thus, Arl8 appeared to function as an important regulator of lysosome biogenesis/function.
2. Rab45 is an atypical GTPase that contains a coiled-coil motif at the mid region and a distinct N-terminal EF-hand domain with C-terminal Rab-homology domain. Rab45 was capable of self-interacting, and the self-interaction required the mid region containing the coiled-coil motif. Rab45 expressed in HeLa cells was localized in a small patch in the perinuclear area of the cell, and the localization was regulated by the guanine nucleotide-bound states of Rab45. The mid region, together with Rab domain, appeared to be essential for the characteristic perinuclear localization of Rab45.
3. Di-Ras, which belongs to a distinct branch of the Ras family, existed predominantly as a GTP-bound form in living cells. The expression of Di-Ras was rather specific in neuronal cells, and its over-expression induced apoptotic cell death with DNA fragmentation in neuronal cells. A deletion mutant of arl-8 in C. elegans displayed a phenotype that acetylcholine release from nerve cells might be impaired. Less

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (45 results)

All 2008 2007 2006 Other

All Journal Article (31 results) (of which Peer Reviewed: 14 results) Presentation (11 results) Book (1 results) Remarks (2 results)

  • [Journal Article] Antagonistic control of cell fates by JNK and p38-MAPK Signaling.2008

    • Author(s)
      Wada T, et. al.
    • Journal Title

      Cell Death and Differentiation 15

      Pages: 89-93

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Tyr-phosphorylation signals translocate RIN3, the small GTPase Rab5-GEF, to early endocytic vesicles.2008

    • Author(s)
      Yoshikawa M, et. al.
    • Journal Title

      Biochem. Biophys. Res. Commun. (In press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Antagonistic control of cell fates by JNK and p38-MAPK signaling2008

    • Author(s)
      Wada T, Stepniak E, Hui L, Leibbrandt A, Katada T, Nishina H, Wagner EF, Penninger JM.
    • Journal Title

      Cell Death Differ 15

      Pages: 89-93

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Tyr-phosphorylation signals translocate RIN3, the small GTPase Rab5-GEF, to early endocytic vesicles2008

    • Author(s)
      Yoshikawa M, Kajiho H, Sakurai K, Minoda T, Nakagawa S, Kontani K, Katada T.
    • Journal Title

      Biochem. Biophys. Res. Commun (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Caf1 regulates translocation of ribonucleotide reductase by releasing nucleoplasmic Spd1-Suc22 assembly.2007

    • Author(s)
      Takahashi S, et. al.
    • Journal Title

      Nucleic Acid Res. 35

      Pages: 1187-1197

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Role of activation of PIP5K gamma661 by AP-2 complex in synaptic vesicle endocytosis.2007

    • Author(s)
      Nakano-Kobayashi A, et. al.
    • Journal Title

      EMBO J. 26

      Pages: 1105-1116

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] GTP binding is essential to the protein kinase activity of LRRK2, a causative gene product for familial Parkinson's disease.2007

    • Author(s)
      Ito G, et. al.
    • Journal Title

      Biochemistry 46

      Pages: 1380-1388

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Rab45/RASEF containing EF-hand domain and a coiled-coil motif as a self-associating GTPase.2007

    • Author(s)
      Shintani M, et. al.
    • Journal Title

      Biochem. Biophys. Res. Commun. 357

      Pages: 661-667

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Activadon of the c-Jun N-terminal kinase pathway by MST1 is essential and sufficient for the induction of chromatin condensation during apoptosis.2007

    • Author(s)
      Ura S, et. al.
    • Journal Title

      Molecular and Cellular Biology 27

      Pages: 5514-5522

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Mechanism of mRNA deadenylation: evidence for a molecular interplay between translation termination factor eRF3 and mRNA deadenylases.2007

    • Author(s)
      Funakoshi Y, et. al.
    • Journal Title

      Genes Dev. 23

      Pages: 3135-3148

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Caf1 regulates translocation of ribonucleotide reductase by releasing nucleoplasmic Spdl-Suc22 assembly2007

    • Author(s)
      Takahashi S, Kontani K, Araki Y, Katada T.
    • Journal Title

      Nucleic Acid Res. 35

      Pages: 1187-1197

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Role of activation of PIP5Kgamma661 by AP-2 complex in synaptic vesicle endocytosis2007

    • Author(s)
      Nakano-Kobayashi A, Yamazaki M, Unoki T, Hongu T, Murata C, Taguchi R, Katada T, Frohman MA, Yokozeki T, Kanaho Y.
    • Journal Title

      EMBO J. 26

      Pages: 1105-1116

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] GTP binding is essential to the protein kinase activity of LRRK2, a causative gene product for familial Parkinson's disease2007

    • Author(s)
      Ito G, Okai T, Fujino G, Takeda K, Ichijo H, Katada T, Iwatsubo T.
    • Journal Title

      Biochemistry 46

      Pages: 1380-1388

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Characterization of Rab45/RASEF containing EF-hand domain and a coiled-coil motif as a self-associating GTPase2007

    • Author(s)
      Shintani M, Tada M, Kobayashi T, Kajiho H, Kontani K, Katada T.
    • Journal Title

      Biochem. Biophys. Res. Commun 357

      Pages: 661-667

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Activation of the c-Jun N-terminal kinase pathway by MST 1 is essential and sufficient for the induction of chromatin condensation during apoptosis2007

    • Author(s)
      Ura S, Nishina H, Gotoh Y, Katada T.
    • Journal Title

      Mol Cell Biol 27

      Pages: 5514-5522

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Mechanism of mRNA deadenylation : evidence for a molecular interplay between translation termination factor eRF3 and mRNA deadenylases2007

    • Author(s)
      Funakoshi Y, Doi Y, Hosoda N, Uchida N, Osawa M, Shimada I, Tsujimoto M, Suzuki T, Katada T, Hoshino S.
    • Journal Title

      Genes Dev. 23

      Pages: 3135-3148

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Rab45/RASEF containing EF-hand domain and a coiled-coil motif as a self-associating GTPase2007

    • Author(s)
      Shintani M, et. al.
    • Journal Title

      Biochem Biophys Res Commun 357

      Pages: 661-667

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cafl regulates translocation of ribonucleotide reductase by releasin nucleolasmic Sdl-Suc22 assembl2007

    • Author(s)
      Takahashi S, et. al.
    • Journal Title

      Nucleic Acid Research 35

      Pages: 1187-1197

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mechanism of mRNA deadenylation:evidence for amolecular interplay between translation temmination factor eRF3 and mRNA deadenlases2007

    • Author(s)
      Funakoshi Y, et. al.
    • Journal Title

      Genes Dev 23

      Pages: 3135-3148

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Role of activation of PIP5Ky661 by AP-2 complex in synaptic vesicle endocytosis.2007

    • Author(s)
      Nakano-Kobayashi A, et al.
    • Journal Title

      EMBO J. 26

      Pages: 1105-1116

    • Related Report
      2006 Annual Research Report
  • [Journal Article] GTP binding is essential to the protein kinase activity of LRRK2 a causative gene product for familial Parkinson's disease.2007

    • Author(s)
      Ito G, et al.
    • Journal Title

      Biochemistry 46

      Pages: 1380-1388

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Cafl regulates translocation of ribonucleotide reductase by releasing nucleoplasmic Spd1-Suc22 assembly.2007

    • Author(s)
      Takahashi S, et al.
    • Journal Title

      Nucleic Acid Res. 35(In press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] The decapping enzyme Dcp1 participates in translation termination through its interaction with the release factor eRF3 in budding yeast.2006

    • Author(s)
      Kofuji S, et. al.
    • Journal Title

      Biochem. Biophys. Res. Commun. 344

      Pages: 547-553

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Release of RASSFIC from the nucleus by Daxx degradation links DNA damage and SAPK/JNK activation.2006

    • Author(s)
      Kitagawa D, et. al.
    • Journal Title

      EMBO J. 25

      Pages: 3286-3297

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] C. elegans DAF-18/PTEN mediates nutrient-dependent arrest of cell cycle and growth in the germline.2006

    • Author(s)
      Fukuyama M, et. al.
    • Journal Title

      Curr. Biol. 16

      Pages: 773-779

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] The decapping enzyme Dcpl participates in translation termination through its interaction with the release factor eRF3 in budding yeast2006

    • Author(s)
      Kofuji S, Sakuno T, Takahashi S, Araki Y, Doi Y, Hoshino S, Katada T.
    • Journal Title

      Biochem. Biophys. Res. Commun 344

      Pages: 547-553

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Release of RASSFI C from the nucleus by Daxx degradation links DNA damage and SAPK/JNK activation2006

    • Author(s)
      Kitagawa D, Kajiho H, Negishi T, Ura S, Watanabe T, Wada T, Ichijo H, Katada T, Nishina H.
    • Journal Title

      EMBO J. 25

      Pages: 3286-3297

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] elegans DAF-18/PTEN mediates nutrient-dependent arrest of cell cycle and growth in the germline2006

    • Author(s)
      Fukuyama M, Rougvie AE, Rothman JH. C.
    • Journal Title

      Curr. Biol 16

      Pages: 773-779

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Release of RASSFIC from the nucleus by Daxx degradation links DNA damage and SAPK/JNK activation.2006

    • Author(s)
      Kitagawa D, ea al.
    • Journal Title

      EMBO J. 25

      Pages: 3286-3297

    • Related Report
      2006 Annual Research Report
  • [Journal Article] The decapping enzyme Dcpl participates in translation termination through its interaction with the release factor eRF3 in budding yeast.2006

    • Author(s)
      Kofuji S, et al.
    • Journal Title

      Biochem.Biophys.Res.Commun. 344

      Pages: 547-553

    • Related Report
      2006 Annual Research Report
  • [Journal Article] C. elegans DAF-18/PTEN mediates nutrient-dependent arrest of cell cycle and growth in the germline.2006

    • Author(s)
      Fukuyama M, et al.
    • Journal Title

      Curr. Biol. 16

      Pages: 773-779

    • Related Report
      2006 Annual Research Report
  • [Presentation] Functional analysis of the Arf-like small GTPase Arl8 in lysosomes.2007

    • Author(s)
      Kontani K, et. al.
    • Organizer
      第30回日本分子生物学会・第80回日本生
    • Place of Presentation
      横浜
    • Year and Date
      2007-12-13
    • Related Report
      2007 Annual Research Report
  • [Presentation] Control of developmental quiescence and survival during L1 diapause.2007

    • Author(s)
      Fukuyama M, et. al.
    • Organizer
      16th International C. elegans Meeting
    • Place of Presentation
      米国 ロスアンゼルス
    • Year and Date
      2007-06-28
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Cell signalings mediated through G proteins and drug targets: Atypical small GTPases exhibiting unique biochemical properties.2007

    • Author(s)
      Katada T.
    • Organizer
      China-Japan Joint Medicine Workshop on Drug Discoveries and Therapeutics 2007
    • Place of Presentation
      中国 済南
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] GEF activity of RIN family towards Rab5 subfamily.2007

    • Author(s)
      Kajiho H, et. al.
    • Organizer
      The International Symposium on Membrane Traffic
    • Place of Presentation
      日本 淡路島
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Functional analysis of Arl8 GTPase in lysosomes.2007

    • Author(s)
      Fujino T, et. al.
    • Organizer
      The International Symposium on Membrane Traffic
    • Place of Presentation
      日本 淡路島
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Cell signalings mediated through G proteins and drug targets : Atypical small GTPases exhibiting unique biochemical properties and tissue expression2007

    • Author(s)
      Toshiaki Katada
    • Organizer
      China-Japan Joint Medicine Workshop on Drug Discoveries and Therapeutics 2007
    • Place of Presentation
      Jinan, China
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Control of developmental quiescence and survival during L1 diapause2007

    • Author(s)
      Masamitsu Fukuyama, Kensuke Sakuma, Park Riyong, Yuriko Atsumi, Ann Rougvie, Toshiaki Katada
    • Organizer
      The 16th International Worm Meeting
    • Place of Presentation
      Los Angels, U.S.A.
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Essential amino acids and carbon sources trigger larval development through the insulin/IGF pathway.2006

    • Author(s)
      Fukuyama M, et. al.
    • Organizer
      The 2nd East Asia C. elegans Meeting
    • Place of Presentation
      韓国 ソウル
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Essential amino acids and carbon sources trigger larval development through the insulin/IGF pathway2006

    • Author(s)
      Masamitsu Fukuyama, Ann Rougvie, Toshiaki Katada
    • Organizer
      The 2nd East Asia C. elegans Meeting
    • Place of Presentation
      Soul, korea
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] GEF activity of RIN family towards Rab5 subfamily2006

    • Author(s)
      Hiroaki Kajiho, Kyoko Sakurai, Manabu Yoshikawa, Tomohiro Minoda, Satoshi Nakagawa, Toshiaki Katada
    • Organizer
      The International Symposium on Membrane Traffic
    • Place of Presentation
      Awajishima, Japan
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Functional analysis of Ar18 GTPase in lysosomes2006

    • Author(s)
      Tomoko Fujino, Tetsuo Kobayashi, Isei Nakae, Keiko Gengyo-Ando, Shohei Mitani, Kenji Kontani, Toshiaki Katada
    • Organizer
      The International Symposium on Membrane Traffic
    • Place of Presentation
      Awajishima, Japan
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] New生化学第2版(分担編集・分担執筆)2006

    • Author(s)
      堅田利明
    • Total Pages
      537
    • Publisher
      廣川書店
    • Related Report
      2006 Annual Research Report
  • [Remarks] 「研究成果報告書概要(和文)」より

    • URL

      http://www.f.u-tokyo.ac.jp/~seiri

    • Related Report
      2007 Final Research Report Summary
  • [Remarks]

    • URL

      http://www.f.u-tokyo.ac.jp/~seiri

    • Related Report
      2007 Annual Research Report

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Published: 2006-04-01   Modified: 2016-04-21  

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