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A Study on Stereochemical Database of Organic Compounds by Restructuring the Terminology of Stereochemistry

Research Project

Project/Area Number 18300033
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Media informatics/Database
Research InstitutionKyoto Institute of Technology

Principal Investigator

FUJITA Shinsaku  京都工繊大, 教授 (60293982)

Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥6,050,000 (Direct Cost: ¥5,600,000、Indirect Cost: ¥450,000)
Fiscal Year 2007: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2006: ¥4,100,000 (Direct Cost: ¥4,100,000)
Keywordsorganic stereochemistry / mathematical chemistry / database / search / stereoisomer
Research Abstract

The target of this project is to study a database system for stereochemistry on the basis of the USCI (unit subduced cycle index) approach, which has been developed by us (S.Fujita, "Symmetry and Combinatorial Enumeration in Chemistry", Springer-Verlag, 1991). To do this task, we have restructureed the present terminology of stereochemistry, where we (1) reconstructed the theory of stereochemistry on a mathematical basis, (2) developed novel representations which are familiar to organic chemists, and (3) manipulated them by computer after creating new algorithms.
As for Item (1), we have developed new concepts "RS-stereoisomers" and "stereoisograms" so as to bring out a final solution for avoding the confusion between prochirality and prostereogenicity.
As for Item (2), we have developed a new concept "mandala", which provides the USCI approach with a diagrammatical approach. Thereby, the USCI approach which was originally formulated mathematically has obtained an alternative intuitive formulation.
As for Item (3), we have developed "the proligand method" as a new method for enumerating stereoisomers. This method has been applied to the enumeration of monosubstituted alkanes, where three algorithms have been implemented in order to conduct computation by means of the Maple and Mathematica programming languages. The results have been further applied to a long-standing problem (during about 130 years after Cayley and van't Hoff), i.e., the enumeration of alkanes as stereoisomers. The problem has been solved by means of two methods based on the proligand method.

Report

(2 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • Research Products

    (41 results)

All 2007 2006 Other

All Journal Article (40 results) Book (1 results)

  • [Journal Article] Mandalas and Fujita's Proligand Method. A Novel Way of Stereochemistry Through the Concepts of Coset Representations and Sphericities (Part 4)2007

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      MATCH Commun. Math. Comput. Chem. 57

      Pages: 5-48

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Enumeration of Alkanes as Stereoisomers2007

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      MATCH Commun. Math. Comput. Chem. 57

      Pages: 265-198

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Alkanes as Stereoisomers. Enumeration by the Combination of Two Dichotomies for Three-Dimensional Trees2007

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      MATCH Commun. Math. Comput. Chem. 57

      Pages: 299-340

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Mandalas and Fujita's Proligand Method. A Novel Way of Stereochemistry Through the Concepts of Coset Representations and Sphericities (Part 4)2007

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      MATCH Commun.Math.Comput.Chem. 57

      Pages: 5-48

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Enumeration of Alkanes as Stereoisomers2007

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      MATCH Commun.Math.Comput.Chem. 57

      Pages: 265-298

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Alkanes as Stereoisomers. Enumeration by the Combination of Two Dichotomies for Three-Dimensional Trees'2007

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      MATCH Commun.Math.Comput.Chem. 57

      Pages: 299-340

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] (Monograph)2007

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      Diagrammatical Approach to Molecular Symmetry and Enumeration of Stereoisomers, Mathemathical Chemistry Mornographs Series IV(Univ.Kragujevac & Faculty of Sci. Kragujevac, Kragujevac)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Diagrammatical Approach to Molecular Symmetry and Enumeration of Stereoisomers (Mathemathical Chemistry Mornographs Series IV)英文, [単著]2007

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      Univ. Kragujevac & Faculty of Sci. Kragujevac (印刷中)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Graphs to Chemical Structures 3. General Theorems with the Use of Different Sets of Sphericity Indices for Combinatorial Enumeration of Nonrigid Stereoisomers2006

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      Theor. Chem. Acc. 115

      Pages: 27-53

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Complete Settlement of Long-Standing Confusion on the Term "Prochirality" in Stereochemistry. Proposal of Pro-RS-Stereogenicity and Integrated Treatment with Prochirality2006

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      Tetrahedron 62

      Pages: 691-705

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Orbits Among Molecules. A Novel Way of Stereochemistry Through the Concepts of Coset Representations and Sphericities (Part 2)2006

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      MATCH Commun. Math. Comput. Chem. 55

      Pages: 5-38

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Combinatorial Enumeration of Stereoisomers by Linking Orb its in Molecules with Orbits Among Molecules. A Novel Way of Stereochemistry Through the Concepts of Coset Representations and Sphericities (Part 3)2006

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      MATCH Commun. Math. Comput. Chem. 55

      Pages: 237-270

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Sphericities of Cycles. What Polya's Theorem is Deficient in for Stereoisomer Enumeration2006

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      Croat. Chem. Acta 79

      Pages: 411-427

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Graphs to Chemical Structures 3. General Theorems with the Use of Different Sets of Sphericity Indices for Combinatorial Enumeration of Nonrigid Stereoisomers'2006

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      Theor.Chem.Acc. 115

      Pages: 37-53

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Complete Settlement of Long-Standing Confusion on the Term "Prochirality" in Stereochemistry. Proposal of Pro-RS-Stereogenicity and Integrated Treatment with Prochirality"2006

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      Tetrahedron 62

      Pages: 691-705

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Orbits Among Molecules. A Novel Way of Stereochemistry Through the Concepts of Coset Representations and Sphericities (Part 2)2006

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      MATCH Commun.Math.Comput.Chem. 55

      Pages: 5-38

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Combinatorial Enumeration of Stereoisomers by Linking Orbits in Molecules with Orbits Among Molecules. A Novel Way of Stereochemistry Through the Concepts of Coset Representations and Sphericities (Part 3)'2006

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      MATCH Commun.Math.Comput.Chem. 55

      Pages: 237-270

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Sphericities of Cycles. What Polya's Theorem is Deficient in for Stereoisomer Enumeration2006

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      Croat.Chem.Acta 79

      Pages: 411-427

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Combinatorial Enumeration of Stereoisomers by Linking Orbits in Molecules with Orbits Among Molecules. A Novel Way of Stereochemistry Through the Concepts of Coset Representations and Sphericities (Part 3)2006

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      MATCH Commun. Math. Comput. Chem. 55

      Pages: 237-270

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Sphericities of Double Cosets, Double Coset Representations, and Fujita's Proligand Method for Combinatorial Enumeration of Stereoisomers

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      J. Math. Chem. (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Group-Theoretical Foundations for the Concept of Mandalas as Diagrammatical Expressions for Characterizing Symmetries of Stereoisomers

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      J. Math. Chem. (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Graphs to Chemical Structures 4. Combinatorial Enumeration of Planted Three-Dimensional Trees as Stereochemical Models of Monosubstituted Alkanes

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      Theor. Chem. Acc. (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Graphs to Chemical Structures 5. Combinatorial Enumeration of Centroidal and Bicentroidal Three-Dimensional Trees as Stereochemical Models of Alkanes

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      Theor. Chem. Acc. (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Combinatorial Enumeration of Three-Dimensional Trees as Stereochemical Models of Alkanes. An Approach Based on Fujita's Proligand Method and Dual Recognition as Uninuclear and Binuclear Promolecules

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      J. Math. Chem. (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Numbers of Monosubstituted Alkanes as Stereoisomers

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      J. Comput. Chem. Jpn (印刷中)

    • NAID

      130000056911

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Enumeration of Primary, Secondary, and Tertiary Monosubstituted Alkanes as Stereoisomers

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      J. Comput. Chem. Jpn (印刷中)

    • NAID

      130000056912

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Sphericities of Double Cosets, Double Coset Representations, and Fujita's Proligand Method for Combinatorial Enumeration of Stereoisomers"

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      J.Math.Chem. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Group-Theoretical Foundations for the Concept of Mandalas as Diagrammatical Expressions for Characterizing Symmetries of Stereoisomers,

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      J.Math.Chem. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Graphs to Chemical Structures 4. Combinatorial Enumeration of Planted Three-Dimensional Trees as Stereochemical Models of Monosubstituted Alkanes

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      Theor.Chem.Acc. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Graphs to Chemical Structures 5. Combinatorial Enumeration of Centroidal and Bicentroidal Three-Dimensional Trees as Stereochemical Models of Alkanes'

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      Theor.Chem.Acc. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Combinatorial Enumeration of Three-Dimensional Trees as Stereochemical Models of Alkanes. An Approach Based on Fujita's Proligand Method and Dual Recognition as Uninuclear and Binuclear Promolecules

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      J.Math.Chem. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Numbers of Monosubstituted Alkanes as Stereoisomers

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      J.Comput.Chem (in press)

    • NAID

      130000056911

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Enumeration of Primary, Secondary, and Tertiary Monosubstituted Alkanes as Stereoisomers",

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      J.Comput.Chem.Jpn. (in press)

    • NAID

      130000056912

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Sphericities of Double Cosets, Double Coset Representations, and Fujita's Proligand Method for Combinatorial Enumeration of Stereoisomers

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      J. Math. Chem. (印刷中)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Group-Theoretical Foundations for the Concept of Mandalas as Diagrammatical Expressions for Characterizing Symmetries of Stereoisomers

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      J. Math. Chem. (印刷中)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Graphs to Chemical Structures 4. Combinatorial Enumeration of Planted Three-Dimensional Trees as Stereochemical Models of Monosubstituted Alkanes

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      Theor. Chem. Acc. (印刷中)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Graphs to Chemical Structures 5. Combinatorial Enumeration of Centroidal and Bicentroidal Three-Dimensional Trees as Stereochemical Models of Alkanes

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      Theor. Chem. Acc. (印刷中)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Combinatorial Enumeration of Three-Dimensional Trees as Stereochemical Models of Alkanes. An Approach Based on Fujita's Proligand Method and Dual Recognition as Uninuclear and Binuclear Promolecules

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      J. Math. Chem. (印刷中)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Numbers of Monosubstituted Alkanes as Stereoisomers

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      J. Comput. Chem. Jpn (印刷中)

    • NAID

      130000056911

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Enumeration of Primary, Secondary, and Tertiary Monosubstituted Alkanes as Stereoisomers

    • Author(s)
      Shinsaku Fujita
    • Journal Title

      J. Comput. Chem. Jpn (印刷中)

    • NAID

      130000056912

    • Related Report
      2006 Annual Research Report
  • [Book] Diagrammatical Approach to Molecular Symmetry and Enumeration of Stereoisomers (Mathemathical Chemistry Mornographs Series IV)英文,[単著]2007

    • Author(s)
      Shinsaku Fujita
    • Publisher
      Univ. Kragujevac & Faculty of Sci. Kragujevac(印刷中)
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary

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Published: 2006-04-01   Modified: 2017-05-19  

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