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Functional characterization of KIAA genes by gene-targeted disruption and identification of biological protein complexes containing the large proteins

Research Project

Project/Area Number 18310137
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied genomics
Research InstitutionKazusa DNA Research Institute

Principal Investigator

NAKAYAMA Manabu  Kazusa DNA Research Institute, Department of Human Gene Research, Chief Research Scientist (30370927)

Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥16,580,000 (Direct Cost: ¥14,600,000、Indirect Cost: ¥1,980,000)
Fiscal Year 2007: ¥8,580,000 (Direct Cost: ¥6,600,000、Indirect Cost: ¥1,980,000)
Fiscal Year 2006: ¥8,000,000 (Direct Cost: ¥8,000,000)
Keywordscomprehensive analysis / functional genomics / large protein / KIAA / KO mice / human genome project / early development / protein complexes
Research Abstract

We propose that the inactivation of genes encoding large proteins is likely to confer definitive, observable phenotypes at a higher frequency, since at least some large proteins are likely to serve as frameworks for the intricate assembly of protein complexes. We have recently reported the functional characterization of the murine homologues of five human KIAA genes (KIAA1409, KIAA1440, KIAA1447, KIAA1768, KIAAl276) that encode large proteins. Gene-targeting of these factors in mice causes phenotypic and developmental defects for three of these genes, which is a high success rate. At one of them, we show that the developing KIAA1440-/-mouse embryo in a pure ICR background arrests its growth at the early blastocyst stage, whereas the majority of the KIAA1440-/- embryos of mixed genetic backgrounds do not progress beyond the morula stage, approximately 0.5 days earlier. KIAA1440-/- embryos exhibited no abnormal localization of E-cadherin or β-catenin and no obvious compaction abnormalities at the morula stage. In addition, E3.5 KIAA1440-/- embryos are not viable even in in vitro cultures. Both TUNEL and FAM-caspase-3/7 assays performed on these embryos consistently showed that E3.5 KIAA1440-/- embryos had activated caspase-3/7, which then induced an apoptotic response predominantly within the inner cell mass of the blastocyst. Moreover, qRT-PCR analysis showed that KIAA1440-/- embryos had increased levels of the unprocessed, primary U2 snRNA transcript but decreased levels of the mature U2 snRNA transcript compared to heterozygotes. The impaired processing of U2 snRNA and the predominantly nuclear localization of KIAA1440 protein is also very consistent with recently reported data showing that it is the largest subunit of the integrator complex, which mediates U1 and U2 snRNA 3'-end processing. Large nuclear KIAA1440/Ints1 is thus suggested to play non-redundant roles in the cell such as the formation of a scaffold for the assembly of the integrator complex.

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (17 results)

All 2007 2006

All Journal Article (15 results) (of which Peer Reviewed: 6 results) Presentation (2 results)

  • [Journal Article] Targeted disruption of the murine large nuclear KIAA1440/Ints1 protein causes growth arrest in early blastocyst stage embryos and eventual a poptotic cell death2007

    • Author(s)
      Hata T.
    • Journal Title

      Biochimica et Biophysica Acta (BBA)-Molecular Cell Research 1773

      Pages: 1039-1051

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Rapid single-tube method for small-scale affinity purification of polyclonal antibodies using HaloTagtrade mark Technology.2007

    • Author(s)
      Hata T.
    • Journal Title

      J Biochem Biophys Methods 70

      Pages: 679-682

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] The mammalian Ced-1 ortholog MEGF10/KIAA1780 displays a novel adhesion pattern.2007

    • Author(s)
      Suzuki E.
    • Journal Title

      Exp. Cell Res. 313

      Pages: 2451-2464

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] MEGF10 is a mammalian ortholog of CED-1 that interacts with clathr in assembly protein complex 2 medium chain and induces large vacuole formation.2007

    • Author(s)
      Suzuki E.
    • Journal Title

      Exp. Cell Res. 313

      Pages: 3729-3742

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Rapid single-tube method for small-scale affinity purification of polyclonal antibodies using HaloTag Technology.2007

    • Author(s)
      Hata T. Nakayama M
    • Journal Title

      J Biochem Biophys Methods(peer-reviewed) 70

      Pages: 679-682

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] The mammalian Ced-1 ortholog MEGF10/KIAA1780 displays a novel adhesion pattern.2007

    • Author(s)
      Suzuki E. Nakayama M
    • Journal Title

      Exp. Cell Res.(peer-reviewed) 313

      Pages: 2451-2464

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Targeted disruption of the murine large nuclear KLAA1440/Intsl protein causes growth arrest in early blastocyst stage embryos and eventual apoptotic cell death.2007

    • Author(s)
      Hata T. Nakayama M
    • Journal Title

      Biochimica et Biophysica Acta(BBA) Molecular Cell Research 1773

      Pages: 1039-1051

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] MEGF10 is a mammalian ortholog of CED-1 that interacts with clathrin assembly protein complex 2 medium chain and induces large vacuole formation.2007

    • Author(s)
      Suzuki E., Nakayama M
    • Journal Title

      Exp. Cell Res. 313

      Pages: 3729-3742

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Targeted disruption of the murine large nuclear KIAA1440/Intsl protein causes growth arrest in early blastocyst stage embryos and eventual a poptotic cell death2007

    • Author(s)
      Hata T.
    • Journal Title

      Biochimica et Biophysica Acta(BBA)-Molecular Cell Research 1773

      Pages: 1039-1051

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Rapid single-tube method for small-scale affinity purification of polyclonal antibodies using Halo Tagtrade mark Technology2007

    • Author(s)
      Hata T, Nakayama M.
    • Journal Title

      J Biochem Biophys Methods 70

      Pages: 679-682

    • Related Report
      2006 Annual Research Report
  • [Journal Article] The mammalian Ced-1 ortholog MEGF10/KIAA1780 displays a novel adhesion pattern2007

    • Author(s)
      Suzuki E, Nakayama M.
    • Journal Title

      EXP.Cell Res. in press

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Targeted disruption of the murine large nuclear KIAA1440/Ints1 protein causes growth arrest in early blastocyst stage embryos and eventual apoptotic cell death2007

    • Author(s)
      Hata T, Nakayama M
    • Journal Title

      Biochimica et Biophysica Acta(BBA)-Molecular Cell Research in press

    • Related Report
      2006 Annual Research Report
  • [Journal Article] A gene-targeting approach for functional characterization of KIAA genes encoding extremely large proteins2006

    • Author(s)
      Nakayama, M.
    • Journal Title

      FASEB J. 20

      Pages: 1718-1720

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Agene-targeting approach for functional characterization of KLAA genes encoding extremely large proteins.2006

    • Author(s)
      Nakayama, M., Iida, M., Koseki, H., Ohara, O
    • Journal Title

      FASEB J.(peer-reviewed) 20

      Pages: 1718-1920

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] A gene-targeting approach for function characterization of KIAA genes encoding extremely large proteins2006

    • Author(s)
      Nakayama, M. et al.
    • Journal Title

      FASEB J 20

      Pages: 1718-1720

    • Related Report
      2006 Annual Research Report
  • [Presentation] マウス初期胚の発生・生存に関与する巨大核蛋白質KIAA1440/Ints1の機能解析2007

    • Author(s)
      秦 利幸
    • Organizer
      日本分子生物学会
    • Place of Presentation
      横浜
    • Year and Date
      2007-12-11
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
  • [Presentation] Functional analysis of large nuclear KIAA1440/Ints1 protein involved in development and survival of mouse early embryo2007

    • Author(s)
      Hata T. Nakayama M.
    • Organizer
      Biochemistry and Molecular Biology
    • Place of Presentation
      Yokahama
    • Year and Date
      2007-12-11
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary

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Published: 2006-04-01   Modified: 2016-04-21  

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