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Establishment of Dynamical Foundations of Selectivity and Stochasticity in Biomolecule Functions and Chemical Reaction Networks

Research Project

Project/Area Number 18340124
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics/Chemical physics
Research InstitutionHokkaido University (2007-2008)
Kobe University (2006)

Principal Investigator

KOMATSUZAKI Tamiki  Hokkaido University, 電子科学研究所, 教授 (30270549)

Co-Investigator(Kenkyū-buntansha) LI Chun Biu  北海道大学, 電子科学研究所, 准教授 (90397795)
BABA Akinori  北海道大学, 電子科学研究所, 博士研究員 (50397840)
Project Period (FY) 2006 – 2008
Project Status Completed (Fiscal Year 2008)
Budget Amount *help
¥17,460,000 (Direct Cost: ¥14,700,000、Indirect Cost: ¥2,760,000)
Fiscal Year 2008: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2007: ¥6,630,000 (Direct Cost: ¥5,100,000、Indirect Cost: ¥1,530,000)
Fiscal Year 2006: ¥5,500,000 (Direct Cost: ¥5,500,000)
Keywords化学反応動力学 / 力学系理論 / 一分子計測 / エネルギー地形学 / 化学反応ダイナミックス / 法双曲的不変多様体 / カオス力学系 / 遷移状態 / 複雑ネットワーク / 相空間幾何学 / 生体分子と水
Research Abstract

相空間構造に立脚して熱的環境において、頑健に存在し得る反応の選択性の起源とその崩壊原理を解明した。また、1分子の挙動の時系列データを通して、背後に存在する自由エネルギー地形および状態遷移ネットワーク構造をできるだけ自然な形で得る汎用なダイナミックス基盤を開発した。この方法論を用いて、将来的には、例えばアルツハイマー病の原因であるアミロイド凝集体の形成機構の解明などへの展開が期待される。

Report

(4 results)
  • 2008 Annual Research Report   Final Research Report ( PDF )
  • 2007 Annual Research Report
  • 2006 Annual Research Report
  • Research Products

    (153 results)

All 2009 2008 2007 2006 Other

All Journal Article (48 results) (of which Peer Reviewed: 31 results) Presentation (103 results) Remarks (2 results)

  • [Journal Article] Bifurcation of no-return transition states in many-body chemical reactions2009

    • Author(s)
      Chun Biu Li, Mikito Toda, and Tamiki Komatsuzaki
    • Journal Title

      Journal of Chemical Physics 130

      Pages: 124116-124122

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Bifurcation of no-return transition states in many-body chemical reactions2009

    • Author(s)
      C. Li, M. Toda and T. Komatsuzaki
    • Journal Title

      Journal of Chemical Physics 130

      Pages: 124116-124122

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Exploring Remnant of Invariants Buried in a Deep Potential Well in Chemical Reactions2008

    • Author(s)
      Hiroshi Teramoto and Tamiki Komatsuzaki
    • Journal Title

      Journal of Chemical Physics 129

      Pages: 94302-94310

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Probing Remnants of Invariants to Mediate Energy Exchange in Highly-Chaotic Many-dimensional Systems2008

    • Author(s)
      Hiroshi Teramoto and Tamiki Komatsuzaki
    • Journal Title

      Physical Review E 78

      Pages: 17202-17205

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] 1分子時系列情報から我々は何を学び取ることができるか?2008

    • Author(s)
      小松崎民樹
    • Journal Title

      物性研究 91

      Pages: 121-130

    • Related Report
      2008 Final Research Report
  • [Journal Article] 1分子時系列情報から読み解く生体分子の状態遷移ネットワーク2008

    • Author(s)
      小松崎民樹
    • Journal Title

      日本生物物理学会生物物理 48(5)

      Pages: 282-283

    • NAID

      110006935708

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] 高分子とカオス-異常拡散と階層的規則性-2008

    • Author(s)
      松永康佑・小松崎民樹
    • Journal Title

      日本高分子学会誌高分子 57(2)

      Pages: 58-61

    • NAID

      10021118818

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Multiscale Complex Network of Protein Conformational Fluctuation Buried in Single Molecule Time Series2008

    • Author(s)
      Chun Biu Li, Haw Yang, and Tamiki Komatsuzaki
    • Journal Title

      Proceedings of National Academy of Sciences USA 105

      Pages: 536-541

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Dynamical Foundation and Limitations of Statistical Reaction Theory2008

    • Author(s)
      Akira Shojiguchi, Chun Biu Li, Tamiki Komatsuzaki, and Mikito Toda
    • Journal Title

      Communications in Nonlinear Science and Numerical Simulation 13

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Probing Remnants of Invariants to Mediate Energy Exchange in Highly-Chaotic Many-dimensional Systems2008

    • Author(s)
      H. Teramoto and T. Komatsuzaki
    • Journal Title

      Physical Review E 78

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Exploring Remnant of Invariants Buried in a Deep Potential Well in Chemical Reactions2008

    • Author(s)
      H. Teramoto and T. Komatsuzaki
    • Journal Title

      Journal of Chemical Physics 129

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Multiscale Complex Network of Protein Conformational Fluctuation Buried in Single Molecule Time Series2008

    • Author(s)
      C. Li, H. Yang and T. Komatsuzaki
    • Journal Title

      Proceedings of National Academy of Sciences USA 105

      Pages: 536-541

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Complex Network of Protein Conformational Fluctuation Buried in Single Molecule Time Series2008

    • Author(s)
      Chun Biu Li, Haw Yang, and Tamiki Komatsuzaki
    • Journal Title

      Proceedings of National Academy of Sciences USA 105

      Pages: 536-541

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dynamical Foundation and Limitations of Statistical Reaction Theory'2008

    • Author(s)
      Akira Shojiguchi, Chun Biu Li, Tamiki Komatsuzaki, and Mikito Toda
    • Journal Title

      Communications in Nonlinear Science and Numerical Simulation 13

      Pages: 857-657

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 高分子とカオス-?異常拡散と階層的規則性?-2008

    • Author(s)
      松永康佑・小松崎民樹
    • Journal Title

      高分子 57

      Pages: 58-61

    • NAID

      10021118818

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 1分子時系列情報から抽出する複雑ネットワーク-Kantorovich計量空間における動態構造-2008

    • Author(s)
      清一人・小松崎民樹
    • Journal Title

      物性研究 (印刷中)

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fractional Behavior in Multi-Dimensional Hamiltonian Systems Describing Reactions2007

    • Author(s)
      Akira Shojiguchi, Chun Biu Li, Tamiki Komatsuzaki, and Mikito Toda
    • Journal Title

      Physical Review E76

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Construction of effective free energy landscape from single molecule time series2007

    • Author(s)
      Akinori Baba and Tamiki Komatsuzaki
    • Journal Title

      Proceedings of National Academy of Sciences USA 104(49)

      Pages: 19297-19302

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Anomalous Diffusionin Folding Dynamics on Minimalist Protein Landscape2007

    • Author(s)
      Yasuhiro Matsunaga, Chun Biu Li, and Tamiki Komatsuzaki
    • Journal Title

      Physical Review Letters 99

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Development of atechnique for the investigation of folding dynamics of single proteins for extended time periods2007

    • Author(s)
      Masahito Kinoshita, Kiyoto Kamagata, Akio Maeda, Yuji Goto, Tamiki Komatsuzaki and Satoshi Takahashi
    • Journal Title

      Proceedings of National Academy of Sciences USA 104

      Pages: 10453-10458

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Fractionalbehavior in nonergodic reaction processesof isomerization2007

    • Author(s)
      Akira Shojiguchi, Chun Biu Li, Tamiki Komatsuzaki, and Mikito Toda
    • Journal Title

      Physical Review E(rapid communication) 75

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Dimension reduction for extracting geometrical structure of multidimensional phase space : Application to fast energy exchange in the reactionO(^1D)+N_2O→NO+NO2007

    • Author(s)
      Shinnosuke Kawai, Yo Fujimura, Okitsugu Kajimoto, Takefumi Yamashita,Chun Biu Li, Tamiki Komatsuzaki, and Mikito Toda
    • Journal Title

      Physical Review A 75

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] 惑星科学と非線形科学の接点 : 化学反応から生物計算まで2007

    • Author(s)
      白川智弘・郡司ペギオ幸夫・小松崎民樹
    • Journal Title

      日本惑星科学会誌遊星人 16(4)

      Pages: 322-329

    • NAID

      110006570491

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Fractional Behavior in Multi-Dimensional Hamiltonian Systems Describing Reactions2007

    • Author(s)
      Akira Shojiguchi, Chun Biu Li, Tamiki Komatsuzaki, and Mikito Toda
    • Journal Title

      Physical Review E 76

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Construction of effective free energy landscape from single molecule time series'2007

    • Author(s)
      Akinori Baba and Tamiki Komatsuzaki
    • Journal Title

      Proceedings of National Academy of Sciences USA 104(49)

      Pages: 19297-19302

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Anomalous Diffusion in Folding Dynamics on Minimalist Protein Landscape2007

    • Author(s)
      Yasuhiro Matsunaga, Chun Biu Li, and Tamiki Komatsuzaki
    • Journal Title

      Physical Review Letters 99

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of a technique for the investigation of folding dynamics of single proteins for extended time periods2007

    • Author(s)
      Masahito Kinoshita, Kiyoto Kamagata, Akio Maeda, Yuji Goto, Tamiki Komatsuzaki and Satoshi Takahashi
    • Journal Title

      Proceedings of National Academy of Sciences USA 104

      Pages: 10453-10458

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 惑星科学と非線形科学の接点-化学反応から生物計算まで-2007

    • Author(s)
      白川智弘・郡司ペギオ幸夫・小松崎民樹
    • Journal Title

      日本惑星科学会誌 遊星人 Vol.16.No.4

      Pages: 322-329

    • NAID

      110006570491

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dimension reduction for extracting geometrical structure of multidimensional phase space : Application to fast energy exchange in the reaction O(^1D)+N_2O→NO+NO2007

    • Author(s)
      Shinnosuke Kawai
    • Journal Title

      Physical Review A 75

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Fractional behavior in nonergodic reaction processes of isomerization2007

    • Author(s)
      Akira Shojiguchi
    • Journal Title

      Physical Review E (rapid communication) 75

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Topographical complexity of multidimensional energy landscapes2006

    • Author(s)
      Gareth J. Rylance, Roy L. Johnston, Yasuhiro Matsunaga, Chun Biu Li, Akinori Baba, Tamiki Komatsuzaki
    • Journal Title

      Proceedings of National Academy of Sciences USA 103

      Pages: 18551-18555

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Wavelet Analysis and Arnold Web Picture for Detecting Energy Transfer in Hamiltonian Dynamical System2006

    • Author(s)
      Akira Shojiguchi, Akinori Baba, Chun Biu Li, Tamiki Komatsuzaki, and Mikito Toda
    • Journal Title

      Laser Physics 16(7)

      Pages: 1097-1106

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Definability of No-return Transition States in High Energy Regime Above Threshold2006

    • Author(s)
      Chun Biu Li, Akira Shojiguchi, MikitoToda, and Tamiki Komatsuzaki
    • Journal Title

      Physical Review Letters 97

      Pages: 28302-28305

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Dynamical Hierarchy in Transition States of Reactions2006

    • Author(s)
      Chun Biu Li, Akira Shojiguchi, Mikito Toda, and Tamiki Komatsuzaki
    • Journal Title

      Few-Body Systems 38

      Pages: 173-179

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] 水の場としての集団運動と生体分子の構造転移ダイナミックス2006

    • Author(s)
      納多哲史・馬場昭典・小松崎民樹
    • Journal Title

      物性研究 86-1

      Pages: 123-129

    • Related Report
      2008 Final Research Report
  • [Journal Article] タンパク質エネルギー地形における構造多様性と多次元エネルギー地形の新しい可視化手法2006

    • Author(s)
      星野恭子・松永康佑・Gareth J. Rylance, Roy L. Johnston, David J. Wales, 小松崎民樹
    • Journal Title

      物性研究 86-1

      Pages: 117-122

    • Related Report
      2008 Final Research Report
  • [Journal Article] Geometrical Structure buriedin the Phase Space of StochasticStructural Transition2006

    • Author(s)
      Chun Biu Li, M. Toda, T. Komatsuzaki
    • Journal Title

      物性研究 86-1

      Pages: 77-81

    • Related Report
      2008 Final Research Report
  • [Journal Article] 複雑な多谷ポテンシャルエネルギー面上で生起する動力学諸問題III-タンパク質とその周辺-(研究会報告)2006

    • Author(s)
      渕上壮太郎・小松崎民樹・戸田幹人
    • Journal Title

      物性研究 86-1

      Pages: 37-154

    • Related Report
      2008 Final Research Report
  • [Journal Article] Dynamical Hierarchy in Transition States of Reactions2006

    • Author(s)
      Chun Biu Li
    • Journal Title

      Few-Body Systems 38

      Pages: 173-179

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Definability of No-return Transition States in High Energy Regime Above Threshold2006

    • Author(s)
      Chun Biu Li
    • Journal Title

      Physical Review Letters 97

      Pages: 28302-28305

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Wavelet Analysis and Arnold Web Picture for Detecting Energy Transfer in Hamiltonian Dynamical System2006

    • Author(s)
      Akira Shojiguchi
    • Journal Title

      Laser Physics 16・7

      Pages: 1097-1106

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Erratum : Definability of No-Return Transition States in the High-Energy Regime above the Reaction Threshold [Phys. Rev. Lett.97,028302 (2006)]2006

    • Author(s)
      Chun Biu Li
    • Journal Title

      Physical Review Letters 97

      Pages: 129901-129901

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Erratum : Dynamical Hierarchy in Transition States of Reactions2006

    • Author(s)
      Chun Biu Li
    • Journal Title

      Few-Body Systems 40

      Pages: 129-129

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Topographical complexity of multidimensional energy landscapes2006

    • Author(s)
      Gareth J. Rylance
    • Journal Title

      Proceedings of National Academy of Sciences USA 103

      Pages: 18551-18555

    • Related Report
      2006 Annual Research Report
  • [Journal Article] 水の場としての集団運動と生体分子の構造転移ダイナミックス2006

    • Author(s)
      納多哲史
    • Journal Title

      物性研究 86・1

      Pages: 123-129

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Geometrical Structure buried in the Phase Space of Stochastic Structural Transition2006

    • Author(s)
      Chun Biu Li
    • Journal Title

      物性研究 86・1

      Pages: 77-81

    • Related Report
      2006 Annual Research Report
  • [Journal Article] タンパク質エネルギー地形における構造多様性と多次元エネルギー地形の新しい可視化手法2006

    • Author(s)
      星野恭子
    • Journal Title

      物性研究 86・1

      Pages: 117-122

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Dynamical Foundation and Limitations of Statistical Reaction Theory

    • Author(s)
      Akira Shojiguchi
    • Journal Title

      Communications in Nonlinear Science and Numerical Simulation (印刷中)

    • Related Report
      2006 Annual Research Report
  • [Presentation] 熱揺らぎ環境下における化学反応の偶然と必然(口頭発表)2009

    • Author(s)
      河合信之輔、小松崎民樹
    • Organizer
      日本化学会第89春季年会
    • Place of Presentation
      日本大学理工学部船橋キャンパス(千葉県船橋市)
    • Year and Date
      2009-03-28
    • Related Report
      2008 Annual Research Report
  • [Presentation] Exploring remnants of invariants buried in a deep potential well in chemical reactions (invited talk)2009

    • Author(s)
      T. Komatsuzaki
    • Organizer
      Focus Session : The Transition State in Physics, Chemistry, and Astrophysics, APS Meeting
    • Place of Presentation
      David L. Lawrence Convention Center Pittsburgh, PA, USA
    • Year and Date
      2009-03-19
    • Related Report
      2008 Annual Research Report
  • [Presentation] Multiscale Networks of Interacting Biological Systems : From netwbrk constructions to causality among them (poster)2009

    • Author(s)
      C. Li
    • Organizer
      Sapporo Winter School, Hokkaido University
    • Place of Presentation
      Hokkaido University, Sapporo, Japan
    • Year and Date
      2009-02-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] Folding patterns of stable / unstable manifolds in high dimensional dynamical systems (poster)2009

    • Author(s)
      H. Teramoto
    • Organizer
      Sapporo Winter School, Hokkaido University
    • Place of Presentation
      Hokkaido University, Sapporo, Japan
    • Year and Date
      2009-02-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] Complex multi-scale networks of protein fluctuation dynamics from single-molecule time series (oral)2009

    • Author(s)
      C. Li
    • Organizer
      6th Asian Biophysics Association (ABA) Symposium & 27th Hong Kong Society of Neuroscience Annual Meeting
    • Place of Presentation
      Hong Kong University of Science and Technology Hong Kong, China
    • Year and Date
      2009-01-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] Exploring remnants of invariants buried in a deep potential well in chemical reactions2009

    • Author(s)
      Tamiki Komatsuzaki
    • Organizer
      Focus Session : The Transition State in Physics, Chemistry, and Astrophysics, APS Meeting
    • Place of Presentation
      Pittsburgh(招待)
    • Related Report
      2008 Final Research Report
  • [Presentation] Data-driven time series analysis of Mechanosensitive ion channel gating dynamics (Poster)2009

    • Author(s)
      K. Sei, C. Li, T. Nomura, H. Tatsumi and T. Komatsuzaki
    • Organizer
      6th Asian Biophysics Association (ABA) Symposium & 27th Hong Kong Society of Neuroscience Annual Meeting
    • Place of Presentation
      Hong Kong University of Science and Technology Hong Kong, China
    • Related Report
      2008 Annual Research Report
  • [Presentation] Data-driven Modeling of Single Mechanosensitive Ion Channels from Time Series Analysis (invited talk)2008

    • Author(s)
      C. Li
    • Organizer
      Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements : Experiments and Theories
    • Place of Presentation
      Institute for Protein Research, Osaka University Suita, Osaka, Japan
    • Year and Date
      2008-12-09
    • Related Report
      2008 Annual Research Report
  • [Presentation] What can we learn about the mechanism of complexity in kinetics and dynamics from scalar time series? (invited talk)2008

    • Author(s)
      T. Komatsuzaki
    • Organizer
      Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements : Experiments and Theories
    • Place of Presentation
      Institute for Protein Research, Osaka University Suita, Osaka, Japan
    • Year and Date
      2008-12-07
    • Related Report
      2008 Annual Research Report
  • [Presentation] Understanding the Multiscale Dynamics of Complex Biological Systems from Single Molecule Exneriments (招待講演)2008

    • Author(s)
      C.Li
    • Organizer
      第46回日本生物物理学会シンポジウム「レア・イベント・から創薬へ」岐阜大学桑田一夫氏、東京大学分子細胞生物学研究所北尾彰朗氏主催)
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Year and Date
      2008-12-05
    • Related Report
      2008 Annual Research Report
  • [Presentation] 生体分子のモード選択性の解明(ポスター発表)2008

    • Author(s)
      寺本央
    • Organizer
      第46回日本生物物理学会
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Year and Date
      2008-12-05
    • Related Report
      2008 Annual Research Report
  • [Presentation] 局所平衡状態解析 : 一分子観測時系列から自由エネルギー地形を読み取るポスター発表)2008

    • Author(s)
      馬場昭典、小松崎民樹
    • Organizer
      日本生物物理学会
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Year and Date
      2008-12-05
    • Related Report
      2008 Annual Research Report
  • [Presentation] 一分子測定法を用いた緑濃菌由来シトクロムcの変性状態内の運動観察(ポスター発表)2008

    • Author(s)
      藤本和也、木下雅仁、鎌形清人、三本木至宏、馬揚昭典、小松崎民樹、高橋聡
    • Organizer
      日本生物物理学会
    • Place of Presentation
      日本生物物理学会
    • Year and Date
      2008-12-05
    • Related Report
      2008 Annual Research Report
  • [Presentation] 機械受容イオンチャネルの統計的解析-ゲーティング機構の解明に向けて-(ポスター)2008

    • Author(s)
      清一人、馬揚昭典、李振風、小松崎民樹
    • Organizer
      第46回亘本生物物理学会
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Year and Date
      2008-12-04
    • Related Report
      2008 Annual Research Report
  • [Presentation] Multiscale Complex Network and Effective Free Energy Landscape Extracted from Single-Molecule Time Series (invited talk)2008

    • Author(s)
      T. Komatsuzaki
    • Organizer
      Symposium on Linking single molecule spectroscopy and energy landscape perspectives, organized at 46th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Year and Date
      2008-12-03
    • Related Report
      2008 Annual Research Report
  • [Presentation] 1分子計測から読み解く状態遷移ネットワーク〜機械受容型イオンチャネルMscLを例に〜(招待講演)2008

    • Author(s)
      清一人、馬場昭典、李振風、小松崎民樹
    • Organizer
      第46回日本生物物理学会シンポジウム「イオンチャネルゲーティングのダイナミクスをイメージする」(福井大学老木成稔氏、名古屋大学曽我部正博氏主催)
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Year and Date
      2008-12-03
    • Related Report
      2008 Annual Research Report
  • [Presentation] On the search of new mathematical frameworks to unveil the multiscale dynamics of complex systems2008

    • Author(s)
      Chun Biu Li
    • Organizer
      Workshop on Interfacial dynamics on the boundaries of physics, chemistry, biology and mathematics
    • Place of Presentation
      Hokkaido(招待)
    • Year and Date
      2008-11-20
    • Related Report
      2008 Final Research Report
  • [Presentation] On the search of new mathematical frameworks to unveil the multiscale dynamics of complex systems (invited talk)2008

    • Author(s)
      C. Li
    • Organizer
      Workshop on Interfacial dynamics on the boundaries of physics, chemistry, biology and mathematics
    • Place of Presentation
      Hokkaido University Sapporo, Japan
    • Year and Date
      2008-11-20
    • Related Report
      2008 Annual Research Report
  • [Presentation] Folding patterns of stable / unstable manifolds in multi-dimensional systems(invited talk)2008

    • Author(s)
      H. Teramoto
    • Organizer
      Workshop on Interfacial dynamics on the boundaries of physics, chemistry, biology and mathematics
    • Place of Presentation
      Hokkaido University Sapporo, Japan
    • Year and Date
      2008-11-20
    • Related Report
      2008 Annual Research Report
  • [Presentation] 1分子時系列情報から我々は何を読み解くことができるのか?(招待講演)2008

    • Author(s)
      小松崎民樹
    • Organizer
      ポストシリコン物質・デバイス創製基盤技術アライアンス-G3「ナノ分子メカニクス・バイオメカニクス」グループ分科会
    • Place of Presentation
      ホテル阪急エキスポパーク(大阪府吹田市)
    • Year and Date
      2008-10-17
    • Related Report
      2008 Annual Research Report
  • [Presentation] Reaction dynamics in condensed phase-Determinacy of the, reaction in a noisy environment-(poster)2008

    • Author(s)
      S. Kawai and T. Komatsuzaki
    • Organizer
      STER5ODYNAMICS 2008
    • Place of Presentation
      Bayshore Hotel Dalian Dalian, China
    • Year and Date
      2008-10-15
    • Related Report
      2008 Annual Research Report
  • [Presentation] Dimension reduction for the analyses of reaction dynamics of O(1^D)+N_2O NO+NO (hot topic talk)2008

    • Author(s)
      S. Kawai, C. Li, T. Komatsuzaki, T. Yamashita, Y. Fuiimura and M. Toda
    • Organizer
      STEREODYNAMICS 2008
    • Place of Presentation
      Bayshore Hotel Dalian Dalian, China
    • Year and Date
      2008-10-15
    • Related Report
      2008 Annual Research Report
  • [Presentation] 液相反応の動力学-熱浴下における反応の決定性(口頭発表)2008

    • Author(s)
      河合信之輔、小松崎民樹
    • Organizer
      第二回分子科学討論会
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Year and Date
      2008-09-27
    • Related Report
      2008 Annual Research Report
  • [Presentation] 1分子時系列情報から読み解く生体機能の階層構造(招待講演)2008

    • Author(s)
      小松崎民樹
    • Organizer
      第64回日本物理学会
    • Place of Presentation
      岩手大学上田キャンパス(盛岡市)
    • Year and Date
      2008-09-20
    • Related Report
      2008 Annual Research Report
  • [Presentation] 符号化可能力学系の時系列からMarkov分割を構成する方法論および異なるMarkov分割から構成されるMarkov確率過程間の関係に関する研究(ポスター発表)2008

    • Author(s)
      寺本央、小松崎民樹
    • Organizer
      第64回日本物理学会
    • Place of Presentation
      岩手大学上田キャンパスφ(盛岡市)
    • Year and Date
      2008-09-20
    • Related Report
      2008 Annual Research Report
  • [Presentation] 1分子計測から読み解く状態遷移ネットワーク-機械受容チャネルを例に(招待講演)2008

    • Author(s)
      小松崎民樹
    • Organizer
      生理研研究会「膜機能分子ダイナミクスの分子機構解明に向けて」
    • Place of Presentation
      分子科学研究所(岡崎市)
    • Year and Date
      2008-09-05
    • Related Report
      2008 Annual Research Report
  • [Presentation] An information-theoretic Approach to unveil the Multiscale Dynamics of Biophysical Systems : Information Flows among Different Scales(招待講演)2008

    • Author(s)
      李振風
    • Organizer
      Dynamics of complex systems 2008--数学的予測方式の可能性と諸分野からのニーズ
    • Place of Presentation
      北海道大学(札幌市)
    • Year and Date
      2008-09-02
    • Related Report
      2008 Annual Research Report
  • [Presentation] 化学反応や生体高分子の構造転移における「偶然と必然」の数理を探る(招待講演)2008

    • Author(s)
      小松崎民樹
    • Organizer
      Dynamics of complex systems 2008--数学的予測方式の可能性と諸分野からのニーズ
    • Place of Presentation
      北海道大学(札幌市)
    • Year and Date
      2008-09-01
    • Related Report
      2008 Annual Research Report
  • [Presentation] Toward Understanding of Dynamical Origin of Mode-Selectivity in Complex Systems (poster)2008

    • Author(s)
      H. Teramoto and T. Komatsuzaki
    • Organizer
      The 2nd International Symposium on Molecular Theory for Real Systems
    • Place of Presentation
      Institute for Molecular Schience, Okazaki, Japan
    • Year and Date
      2008-08-04
    • Related Report
      2008 Annual Research Report
  • [Presentation] 時系列情報から読み取る数理モデル-生体分子の構造揺らぎを例に(招待講演)2008

    • Author(s)
      小松崎民樹
    • Organizer
      特定領域研究「移動知」A班+D班の合同班会議
    • Place of Presentation
      北海道大学(札幌市)
    • Year and Date
      2008-07-23
    • Related Report
      2008 Annual Research Report
  • [Presentation] 生体分子系における化学反応の選択性と統計性の原理的理解招待講演)2008

    • Author(s)
      寺本央、小松崎民樹
    • Organizer
      特定領域研究「高次系分子科学」第2回ミニ公開シンポジウム(神戸大学)
    • Place of Presentation
      神戸大学(神戸市)
    • Year and Date
      2008-07-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] 生体分子における選択性の原理的理解(ポスター発表)2008

    • Author(s)
      寺本央
    • Organizer
      第48回生物物理若手の会夏の学校
    • Place of Presentation
      八王子セミナーハウス(八王子市)
    • Year and Date
      2008-07-09
    • Related Report
      2008 Annual Research Report
  • [Presentation] Extracting Multiscale Complex Network of Protein Fluctuation from Single-Molecule Time Series (invited talk)2008

    • Author(s)
      T. Komatsuzaki
    • Organizer
      Telluride Summer Workshop "Characterizing Landscapes : From Biomolecules to Cellular Networks"
    • Place of Presentation
      TellurideScience Research Center Telluride, USA
    • Year and Date
      2008-07-09
    • Related Report
      2008 Annual Research Report
  • [Presentation] Several properties of entanglement and intersection : between stable and unstable manifold emanating from normally hyperbolic invariant manifold(oral)2008

    • Author(s)
      H. Teramoto and T. Komatsuzaki
    • Organizer
      Kyoto Dynamics Days 7 (KDD7)
    • Place of Presentation
      Kyoto University Kyoto, Japan
    • Year and Date
      2008-06-26
    • Related Report
      2008 Annual Research Report
  • [Presentation] 1分子時系列情報から生体分子機能の複雑さを解読する(招待講演)2008

    • Author(s)
      小松崎民樹
    • Organizer
      分子研シンポジウム2008
    • Place of Presentation
      分子科学研究所(岡崎市)
    • Year and Date
      2008-06-14
    • Related Report
      2008 Annual Research Report
  • [Presentation] Uncovering the Phase Space Geometry of Reaction Dynamics (口頭発表)2008

    • Author(s)
      李振風、戸田幹人、小松崎民樹
    • Organizer
      化学反応討論会
    • Place of Presentation
      北海道大学(札幌市)
    • Year and Date
      2008-06-04
    • Related Report
      2008 Annual Research Report
  • [Presentation] 反応O(1^D)+N_2O→NO+NOの相空間構造の解析(ポスター発表)2008

    • Author(s)
      河合信之輔、李振風、小松崎民樹、山下雄史、藤村陽、戸田幹人
    • Organizer
      化学反応討論会
    • Place of Presentation
      北海道大学(札幌市)
    • Year and Date
      2008-06-03
    • Related Report
      2008 Annual Research Report
  • [Presentation] Construction of an Effective Free Energy Landscape from Single-Molecule Time Series(invited talk)2008

    • Author(s)
      T. Komatsuzaki
    • Organizer
      1st Annual Protein and Peptide Conference, BIT's 4th Life Spring Forum on protein folding and diseases -celebrating 60 years of Prof. Scheraga's science (1948-2008)
    • Place of Presentation
      Shenzhen Convention & Exhibition Center Shenzen, China
    • Year and Date
      2008-04-23
    • Related Report
      2008 Annual Research Report
  • [Presentation] Capturing the Multiple-Time-Scale Dynamical State-Space-Network in the Time Series of Single Molecule Exneriment(Doster)2008

    • Author(s)
      C. Li and T. Komatsuzaki
    • Organizer
      1st Annual Protein and Peptide Conference
    • Place of Presentation
      Shenzhen Convention & Exhibition Center Shenzen, China
    • Year and Date
      2008-04-23
    • Related Report
      2008 Annual Research Report
  • [Presentation] 1分子時系列から抽出する複雑ネットワーク2008

    • Author(s)
      清一人、小松崎 民樹
    • Organizer
      日本生物物理学会北海道支部例会
    • Place of Presentation
      北海道大学(札幌市)
    • Year and Date
      2008-03-18
    • Related Report
      2007 Annual Research Report
  • [Presentation] Multiscale Complex network of protein conformation fluctuations in single molecule time series2008

    • Author(s)
      Chun Biu Li, Haw Yang, 小松崎 民樹
    • Organizer
      日本生物物理学会北海道支部例会
    • Place of Presentation
      北海道大学(札幌市)
    • Year and Date
      2008-03-18
    • Related Report
      2007 Annual Research Report
  • [Presentation] A method to extract intermittent regular and chaotic behavior and their local properties from 1-dimensional time series2008

    • Author(s)
      Hiroshi Teramoto, Tamiki Komatsuzaki
    • Organizer
      the 9th RIES-Hokudai International Symposium"創"
    • Place of Presentation
      北海道大学(札幌市)
    • Year and Date
      2008-01-27
    • Related Report
      2007 Annual Research Report
  • [Presentation] Effective energy landscape from single molecule time series2008

    • Author(s)
      Akinori Baba, Tamiki Komatsuzaki
    • Organizer
      the 9th RIES-Hokudai International Symposium"創",
    • Place of Presentation
      北海道大学(札幌市)
    • Year and Date
      2008-01-27
    • Related Report
      2007 Annual Research Report
  • [Presentation] What can we learn about the mechanism of complexity in kinetics and dynamics from scalar time series?2008

    • Author(s)
      Tamiki Komatsuzaki
    • Organizer
      Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements : Experiments and Theories
    • Place of Presentation
      Osaka(招待)
    • Related Report
      2008 Final Research Report
  • [Presentation] Data-driven Modeling of Single Mechanosensitive Ion Channels from Time Series Analysis2008

    • Author(s)
      Chun Biu Li
    • Organizer
      Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements : Experiments and Theories
    • Place of Presentation
      Osaka(招待)
    • Related Report
      2008 Final Research Report
  • [Presentation] Understanding the Multiscale Dynamics of Complex Biological Systems from Single Molecule Experiments2008

    • Author(s)
      Chun Biu Li
    • Organizer
      日本生物物理学会シンポジウム「レア・イベントから創薬へ」
    • Place of Presentation
      福岡(招待)
    • Related Report
      2008 Final Research Report
  • [Presentation] 1分子計測から読み解く状態遷移ネットワーク-機械受容チャネルを例に2008

    • Author(s)
      清一人、馬場昭典、Chun Biu Li、小松崎民樹
    • Organizer
      日本生物物理学会シンポジウム「イオンチャネルゲーティングのダイナミクスをイメージする」
    • Place of Presentation
      福岡(招待)
    • Related Report
      2008 Final Research Report
  • [Presentation] Multiscale Complex Network and Effective Free Energy Landscape Extracted from Single-Molecule Time Series2008

    • Author(s)
      Tamiki Komatsuzaki
    • Organizer
      Symposium on Linking single molecule spectroscopy and energy landscape perspectives at 46th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Fukuoka(招待)
    • Related Report
      2008 Final Research Report
  • [Presentation] 1分子時系列情報から読み解く生体機能の階層構造2008

    • Author(s)
      小松崎民樹
    • Organizer
      第64回日本物理学会
    • Place of Presentation
      岩手(招待)
    • Related Report
      2008 Final Research Report
  • [Presentation] 「1分子計測から読み解く状態遷移ネットワーク-機械受容チャネルを例に」「膜機能分子ダイナミクスの分子機構解明に向けて」2008

    • Author(s)
      小松崎民樹
    • Organizer
      生理研研究会
    • Place of Presentation
      岡崎(招待)
    • Related Report
      2008 Final Research Report
  • [Presentation] 化学反応や生体高分子の構造転移における「偶然と必然」の数理を探る2008

    • Author(s)
      小松崎民樹
    • Organizer
      Dynamics of complex systems 2008--数学的予測方式の可能性と諸分野からのニーズ
    • Place of Presentation
      北海道大学(招待)
    • Related Report
      2008 Final Research Report
  • [Presentation] An Information-theoretic Approach to unveil the Multiscale Dynamics of Biophysical Systems : Information Flows among Different Scales2008

    • Author(s)
      Chun Biu Li
    • Organizer
      Dynamics of complex systems 2008--数学的予測方式の可能性と諸分野からのニーズ
    • Place of Presentation
      北海道大学(招待)
    • Related Report
      2008 Final Research Report
  • [Presentation] Extracting Multiscale Complex Network of Protein Fluctuation from Single-Molecule TimeS eries, Telluride Summer Workshop2008

    • Author(s)
      Tamiki Komatsuzaki
    • Organizer
      Characterizing Landscapes : From Biomolecules to Cellular Networks
    • Place of Presentation
      (invited)
    • Related Report
      2008 Final Research Report
  • [Presentation] 1分子時系列情報から生体分子機能の複雑さを解読する2008

    • Author(s)
      小松崎民樹
    • Organizer
      分子研シンポジウム
    • Place of Presentation
      岡崎(招待)
    • Related Report
      2008 Final Research Report
  • [Presentation] Construction of an Effective Free Energy Landscape from Single-Molecule Time Series2008

    • Author(s)
      Tamiki Komatsuzaki
    • Organizer
      1st Annual Protein and Peptide Conference, BIT's 4th Life Spring Forum on protein folding and diseases-celebrating 60years of Prof. Scheraga's science(1948-2008), Shenzhen
    • Place of Presentation
      invited(招待)
    • Related Report
      2008 Final Research Report
  • [Presentation] Multidimensional energy landscape from single molecule time series(poster)2008

    • Author(s)
      A. Baba and T. Komatsuzaki
    • Organizer
      Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements : Experiments and Theories
    • Place of Presentation
      Institute for Protein Research, Osaka University Suita, Osaka, Japan
    • Related Report
      2008 Annual Research Report
  • [Presentation] Denatured state dynamics of cytochrome c551 observed by single molecule fluorescence intensity measurements (poster)2008

    • Author(s)
      K. Fujimoto, M. Kinoshita, K. Kamagata, Y. Goto, Y. Sambongi, A. Baba, T. Komatsuzaki and S. Takahashi
    • Organizer
      Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements : Experiments and Theories
    • Place of Presentation
      Institute for Protein Research, Osaka University Suita, Osaka, Japan
    • Related Report
      2008 Annual Research Report
  • [Presentation] Toward the understanding of the gating dynamics for the Mechanosensitive ion channel (poster)2008

    • Author(s)
      K. Sei, C. Li and T. Komatsuzaki
    • Organizer
      Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements: Experiments and Theories
    • Place of Presentation
      Institute for Protein Research, Osaka University Suita, Osaka, Japan
    • Related Report
      2008 Annual Research Report
  • [Presentation] Elucidation of mode-selectivity of biomolecule (poster)2008

    • Author(s)
      H. Teramoto and T. Komatsuzaki
    • Organizer
      Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements : Experiments and Theories
    • Place of Presentation
      Institute for Protein Research, Osaka University Suita, Osaka, Japan
    • Related Report
      2008 Annual Research Report
  • [Presentation] Aiming at the universal understanding of molecular systems in terms of theories of dynamical system2008

    • Author(s)
      寺本 央
    • Organizer
      若手研究会「理論化学のフロンティアを探る」
    • Place of Presentation
      岡崎コンファレンスセンター(岡崎市)
    • Related Report
      2007 Annual Research Report
  • [Presentation] 反応性自由度は反応に際して如何にしてエネルギーを獲得するのか?2008

    • Author(s)
      寺本 央、小松崎 民樹
    • Organizer
      大規模計算と分子のダイナミクス
    • Place of Presentation
      岡崎コンファレンスセンター(岡崎市)
    • Related Report
      2007 Annual Research Report
  • [Presentation] How stable and unstable manifold entangle with each other and what is essentially new in systems with more than 2 dof?2008

    • Author(s)
      寺本 央、小松崎 民樹
    • Organizer
      第2回力学系ルネッサンス
    • Place of Presentation
      奈良女子大学(奈良市)
    • Related Report
      2007 Annual Research Report
  • [Presentation] 時系列データから間欠的なカオスおよび規則的挙動を抽出するための方法論2008

    • Author(s)
      寺本 央、小松崎 民樹
    • Organizer
      日本物理学会 第63回年次大会プログラム
    • Place of Presentation
      近畿大学(東大阪市)
    • Related Report
      2007 Annual Research Report
  • [Presentation] 化学反応における偶然と必然-非再交差仮定を満たす遷移状熊の厳密解とその存在条件-2007

    • Author(s)
      小松崎 民樹
    • Organizer
      第7回理論化学セミナー
    • Place of Presentation
      北海道大学(札幌市)
    • Year and Date
      2007-04-03
    • Related Report
      2007 Annual Research Report
  • [Presentation] 法双曲的不変多様体と化学反応ダイナミックス2007

    • Author(s)
      小松崎 民樹
    • Organizer
      第102回複雑系セミナー
    • Place of Presentation
      北海道大学(札幌市)
    • Year and Date
      2007-04-02
    • Related Report
      2007 Annual Research Report
  • [Presentation] 「1分子時系列情報から我々は何を学び取ることができるか?」「非線形科学と統計科学の対話」2007

    • Author(s)
      小松崎民樹
    • Organizer
      統計数理研究所研究会
    • Place of Presentation
      広尾(招待)
    • Related Report
      2008 Final Research Report
  • [Presentation] 時系列から見る運動の階層性2007

    • Author(s)
      馬場昭典
    • Organizer
      日本物理学会第62回年次大会
    • Place of Presentation
      (招待)
    • Related Report
      2008 Final Research Report
  • [Presentation] 生体分子時系列情報から我々は何を学び取ることができるか?2007

    • Author(s)
      小松崎民樹
    • Organizer
      分子研研究会分子科学における連成シュミュレーションの基礎理論と応用
    • Place of Presentation
      岡崎(招待)
    • Related Report
      2008 Final Research Report
  • [Presentation] Dynamical Hierarchy of Transitions in Chemical Reactions2007

    • Author(s)
      Tamiki Komatsuzaki
    • Organizer
      Telluride Workshop, The Complexity of Dynamics and Kinetics in Many Dimensions
    • Place of Presentation
      CO, USA(招待)
    • Related Report
      2008 Final Research Report
  • [Presentation] Multiple-Time-Scale State Space Landscape buried in Single Molecule Time Series2007

    • Author(s)
      Tamiki Komatsuzaki
    • Organizer
      Telluride Workshop, The Complexity of Dynamics and Kinetics in Many Dimensions
    • Place of Presentation
      CO, USA(招待)
    • Related Report
      2008 Final Research Report
  • [Presentation] 生体分子の一分子時系列解析 : 局所平衡状態と自由エネルギー地形非線形振動子系の物理学 : 現代的問題とその解析2007

    • Author(s)
      馬場昭典
    • Organizer
      基礎物理学研究所
    • Place of Presentation
      京都(招待)
    • Related Report
      2008 Final Research Report
  • [Presentation] Multiple-Time-Scale State Network Topography buried inSingle Molecule Time Series2007

    • Author(s)
      Tamiki Komatsuzaki
    • Organizer
      Energy Landscapes : Negotiating the Black Diamonds, Telluride
    • Place of Presentation
      CO, USA(invited)
    • Related Report
      2008 Final Research Report
  • [Presentation] DynamicalHierarchy of Transitions in Chemical Reactions2007

    • Author(s)
      Tamiki Komatsuzaki
    • Organizer
      DYNAMICS OF COMPLEX SYSTEMS-mathematical modeling, method and prediction
    • Place of Presentation
      Hokkaido University, Hokkaido, Japan(invited)
    • Related Report
      2008 Final Research Report
  • [Presentation] 生体分子の一分子時系列解析:局所平衡状態と自由エネルギー地形2007

    • Author(s)
      馬場 昭典
    • Organizer
      非線形振動子系 の物理学:現代的問題とその解析
    • Place of Presentation
      基礎物理学研究所(京都市)
    • Related Report
      2007 Annual Research Report
  • [Presentation] 生体分子時系列情報から 我々は何を学び取ることができるか?2007

    • Author(s)
      小松崎 民樹
    • Organizer
      分子研研究会 分子科学における連成シミュレーションの基礎理論と応用
    • Place of Presentation
      分子科学研究所(岡崎市)
    • Related Report
      2007 Annual Research Report
  • [Presentation] 一分子時系列から自由エネルギー地形を読み取る2007

    • Author(s)
      馬場 昭典、小松崎 民樹
    • Organizer
      分子研研究会 分子科学における連成シミュレーションの基礎理論と応用
    • Place of Presentation
      分子科学研究所(岡崎市)
    • Related Report
      2007 Annual Research Report
  • [Presentation] 正準変換摂動理動による遅い作用変数の抽出法とそれによる動力学の解明2007

    • Author(s)
      寺本 央、小松崎 民樹
    • Organizer
      分子研研究会 分子科学における連成シミュレーションの基礎理論と応用
    • Place of Presentation
      分子科学研究所(岡崎市)
    • Related Report
      2007 Annual Research Report
  • [Presentation] 生体分子における振動エネルギーから力学的エネルギーへの変換機構2007

    • Author(s)
      寺本 央、小松崎 民樹
    • Organizer
      第一回分子科学討論会
    • Place of Presentation
      分子科学研究所(岡崎市)
    • Related Report
      2007 Annual Research Report
  • [Presentation] 生体分子の振動エネルギーから力学的エネルギーへの変換機構2007

    • Author(s)
      寺本 央、小松崎 民樹
    • Organizer
      日本物理学会 第62回年次大会
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2007 Annual Research Report
  • [Presentation] 時系列から見る運動の階層性2007

    • Author(s)
      馬場 昭典、小松崎 民樹
    • Organizer
      日本物理学会第62回年次大会
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2007 Annual Research Report
  • [Presentation] 1分子時系列情報から抽出する複雑ネットワーク:Kantorovich計量空間における動態構造2007

    • Author(s)
      生清 一人、小松崎 民樹
    • Organizer
      日本物理学会 第62回年次大会
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2007 Annual Research Report
  • [Presentation] Novel method and theory of multi-time-scale dynamical state-network from time series of single molecule experiments2007

    • Author(s)
      Li Chun Biu, Tamiki Komatsuzaki
    • Organizer
      日本物理学会 第62回年次大会
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2007 Annual Research Report
  • [Presentation] 1分子時系列情報から我々は何を学び取ることができるか?2007

    • Author(s)
      小松崎 民樹
    • Organizer
      統計数理研究所研究会「非線形科学と統計科学の対話」
    • Place of Presentation
      統計数理研究所(東京都)
    • Related Report
      2007 Annual Research Report
  • [Presentation] Complex Multiscale Networks and Information Flows for Protein Dynamics from Single-molecule Time Series2007

    • Author(s)
      Chun Biu Li, Haw Yang, 小松崎 民樹
    • Organizer
      第45回日本生物物理学会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Related Report
      2007 Annual Research Report
  • [Presentation] 蛋白質の折り畳み運動を観測するための-分子測定手法の開発2007

    • Author(s)
      木下 雅仁、鎌形 清人、前田 晃央、後藤 祐児、小松崎 民樹、高橋 聡
    • Organizer
      第45回日本生物物理学会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Related Report
      2007 Annual Research Report
  • [Presentation] 生体系時系列データから動力学諸量を抽出する方法論2007

    • Author(s)
      寺本 央、小松崎 民樹
    • Organizer
      第45回日本生物物理学会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Related Report
      2007 Annual Research Report
  • [Presentation] Multiple-Time-Scale State Network Topography buried in Single Molecule Time Series2007

    • Author(s)
      Tamiki Komatsuzaki
    • Organizer
      Energy Landscapes: Negotiating the Black Diamonds
    • Place of Presentation
      Telluride Science Research Center, CO, USA
    • Related Report
      2007 Annual Research Report
  • [Presentation] How can One Extract Free Energy Landscapes from Single Molecule Time Series?2007

    • Author(s)
      Akinori Baba
    • Organizer
      Energy Landscapes: Negotiating the Black Diamonds
    • Place of Presentation
      Telluride Science Research Center, CO, USA
    • Related Report
      2007 Annual Research Report
  • [Presentation] Fractional behavior in Hamiltonian Chaos Describing Reactions2007

    • Author(s)
      Akira Shojiguchi, Chun-Biu Li, Tamiki Komatsuzaki, Mikito Toda
    • Organizer
      The Third Shanghai International Symposium On Nonlinear Sciences And Applications
    • Place of Presentation
      Shanghai, China
    • Related Report
      2007 Annual Research Report
  • [Presentation] The Dynamical Origin of Chemical Reactions: How and Why Systems can React from One State to the Other2007

    • Author(s)
      Chun Biu Li, Akira Shojiguchi, Mikito Toda, and Tamiki Komatsuzaki
    • Organizer
      The Third Shanghai International Symposium On Nonlinear Sciences And Applications
    • Place of Presentation
      Shanghai, China
    • Related Report
      2007 Annual Research Report
  • [Presentation] Extracting Protein Conformational Dynamics on a Photon-by-Photon Basisin Single Molecule Experiments2007

    • Author(s)
      Chun-Biu Li, Tamiki Komatsuzaki
    • Organizer
      The Third Shanghai International Symposium On Nonlinear Sciences And Applications
    • Place of Presentation
      Shanghai, China
    • Related Report
      2007 Annual Research Report
  • [Presentation] Anomalous Diffusion in Folding Dynamics of Minimalist Protein Landscape2007

    • Author(s)
      Yasuhiro Matsunaga, Chun-Biu Li, Tamiki Komatsuzaki
    • Organizer
      The Third Shanghai International Symposium On Nonlinear Sciences And Applications
    • Place of Presentation
      Shanghai, China
    • Related Report
      2007 Annual Research Report
  • [Presentation] Complex network extracted from single molecule time series: Dyniamical structure in Kantorovich Metric space2007

    • Author(s)
      Kazuto Sei and Tamiki Komatsuzaki
    • Organizer
      International Symposium on Molecular Theory for Real Systems
    • Place of Presentation
      Katsura, Kyoto
    • Related Report
      2007 Annual Research Report
  • [Presentation] Capturing the multiple-time-scale dynamical state-network in the time series of single molecule experiments2007

    • Author(s)
      Kazuto Sei and Tamiki Komatsuzaki
    • Organizer
      ACS National Meeting: Single Molecule Spectroscopy, Imaging and Manipulation of Biomolecular Systems
    • Place of Presentation
      Boston, USA
    • Related Report
      2007 Annual Research Report
  • [Presentation] Dynamical Hierarchy of Transitions in Chemical Reactions2007

    • Author(s)
      Tamiki Komatsuzaki
    • Organizer
      Telluride Workshop, The Complexity of Dynamics and Kinetics in Many Dimensions
    • Place of Presentation
      Telluride Science Research Center, CO, USA
    • Related Report
      2007 Annual Research Report
  • [Presentation] Multiple-Time-Scale State Space Landscape buried in Single Molecule Time Series2007

    • Author(s)
      Tamiki Komatsuzaki
    • Organizer
      Telluride Workshop, The Complexity of Dynamics and Kinetics in Many Dimensions
    • Place of Presentation
      Telluride Science Research Center, CO, USA
    • Related Report
      2007 Annual Research Report
  • [Presentation] Geometrical structure under bond selective chemistry2007

    • Author(s)
      Hiroshi Teramoto, Tamiki Komatsuzaki
    • Organizer
      Telluride Workshop, The Complexity of Dynamics and Kinetics in Many Dimensions
    • Place of Presentation
      Telluride Science Research Center, CO, USA
    • Related Report
      2007 Annual Research Report
  • [Presentation] The relation between the stable manifold stretched from NHIM and remant structures2007

    • Author(s)
      Hiroshi Teramoto, Tamiki Komatsuzaki
    • Organizer
      Telluride Workshop, The Complexity of Dynamics and Kinetics in Many Dimensions
    • Place of Presentation
      Telluride Science Research Center, CO, USA
    • Related Report
      2007 Annual Research Report
  • [Presentation] Introduction to theories of dynamical systems2007

    • Author(s)
      寺本 央、小松崎 民樹
    • Organizer
      第1回力学系ルネッサンス
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2007 Annual Research Report
  • [Presentation] What can one learn about the underlying free energy landscape or dynamical structure from single molecule time series?2006

    • Author(s)
      Tamiki Komatsuzaki
    • Organizer
      Discussion on "Theory and simulation of biomolecular nano-machines"
    • Place of Presentation
      Maiko Villa, Kobe(invited)
    • Related Report
      2008 Final Research Report
  • [Presentation] A construction of the underlying free energy landscape from single molecule time series2006

    • Author(s)
      Tamiki Komatsuzaki
    • Organizer
      Fifth East Asian Biophysics Symposium & Forty-Fourth Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Okinawa(invited)
    • Related Report
      2008 Final Research Report
  • [Presentation] Extracting Conformational Dynamics on a Photon by Photon basis in Single Molecule Electron Transfer「蛋白質の機能運動と折り畳み運動」2006

    • Author(s)
      Chun Biu Li
    • Organizer
      大阪大学蛋白質研究所セミナー
    • Place of Presentation
      (招待)
    • Related Report
      2008 Final Research Report
  • [Presentation] 1分子計測時系列情報から読み取るたんぱく質系の動的構造2006

    • Author(s)
      小松崎民樹
    • Organizer
      ダイナミクス研究会
    • Place of Presentation
      岐阜大医学部(招待)
    • Related Report
      2008 Final Research Report
  • [Remarks]

    • URL

      http://mlns.es.hokudai.ac.jp

    • Related Report
      2008 Final Research Report
  • [Remarks] 研究室HP

    • URL

      http://mlns.es.hokudai.ac.jp/index_j.html

    • Related Report
      2008 Annual Research Report

URL: 

Published: 2006-04-01   Modified: 2016-04-21  

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