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Comparison of Asian warm weather legume genomes: identification of species specific QTL for crop improvement

Research Project

Project/Area Number 18380009
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Breeding science
Research InstitutionNational Institute of Agrobiological Sciences

Principal Investigator

KAGA Akito  National Institute of Agrobiological Sciences, ダイズゲノム研究チーム, 主任研究員 (30391551)

Co-Investigator(Kenkyū-buntansha) TOMOOKA Norihiko  農業生物資源研究所, ジーンバンク, 上級研究員 (40373253)
ISEMURA Takehisa  農業生物資源研究所, ジーンバンク, 特別研究員
DUNCAN Vaughan A  農業生物資源研究所, ジーンバンク, 上級研究員 (40391552)
TABATA Satoshi  かずさDNA研究所, 副所長 (70197549)
PEERASAK Srinives  Kasetsart大学, 農学部・農学科, 教授
BUBPA Chaitieng  Ubonratchathani大学, 農学部・園芸学科, 助教授
PRAKIT Somta  Kasetsart大学, 農学部・農学科, 助手
Project Period (FY) 2006 – 2008
Project Status Completed (Fiscal Year 2008)
Budget Amount *help
¥17,680,000 (Direct Cost: ¥14,800,000、Indirect Cost: ¥2,880,000)
Fiscal Year 2008: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2007: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2006: ¥5,200,000 (Direct Cost: ¥5,200,000)
Keywords遺伝資源 / アズキ / ダイズ / ササゲ属 / 栽培化 / マメ科 / 連鎖地図 / QTL / シンテニー
Research Abstract

アジアで栽培化されたアズキ、リョクトウ、ツルアズキ、ケツルアズキのVigna属マメ科作物4種は、植物種や推定起源地が異なるだけでなく、植物器官の形状にも大きな差異が認められるが、比較ゲノム解析により染色体上の遺伝子の並びは高度に保存されていることが明らかになった。ダイズとVigna属の間では、染色体が大きな単位で保存されている染色体とそうでないないものが存在することが明らかになった。これらのマメ科作物において、野生種から栽培種への形態・生理学的な大きな変化に利用されてきた遺伝変異には、共通の遺伝子に生じた変異が無意識に利用されていたこと、まだ利用されていない可能性のある遺伝効果の大きな変異が存在することなどが明らかとなり、将来種もしくは属を越えた遺伝変異の育種利用が期待される。

Report

(4 results)
  • 2008 Annual Research Report   Final Research Report ( PDF )
  • 2007 Annual Research Report
  • 2006 Annual Research Report
  • Research Products

    (37 results)

All 2009 2008 2007 2006 Other

All Journal Article (16 results) (of which Peer Reviewed: 10 results) Presentation (18 results) Book (1 results) Remarks (2 results)

  • [Journal Article] The genetics of domestication of the azuki bean (Vigna angularis)2008

    • Author(s)
      Kaga A, Isemura T, Tomooka N, Vaughan DA.
    • Journal Title

      Genetics 178

      Pages: 1013-1036

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Mapping of quantitative trait loci for a new source of resistance to bruchids in the wild species Vigna nepalensis Tateishi & Maxted (Vigna subgenus Ceratotropis)2008

    • Author(s)
      Somta P, Kaga A, Tomooka N, Isemura T, Vaughan DA, Srinives P
    • Journal Title

      Theoretical and Applied Genetics 117

      Pages: 621-628

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Mapping of quantitative trait loci for a new source of resistance to bruchids in the wild species Vigna nepalensis Tateishi & Maxted (Vigna subgenus Ceratotropis)2008

    • Author(s)
      Somta
    • Journal Title

      Theoretical and Applied Genetics 117

      Pages: 621-628

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic diversity of the azuki bean (Vigna angularis (Willd.) Ohwi & Ohashi) gene pool as assessed by SSR markers2008

    • Author(s)
      Xu
    • Journal Title

      Genome 51

      Pages: 728-738

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The genetics of domestication of the azuki bean(Vigna angularis)2008

    • Author(s)
      Kaga
    • Journal Title

      Genetics 178

      Pages: 1013-1036

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genome dissection of traits related to domestication in azuki bean (Vigna angularis) and comparison with other warm-season legumes.2007

    • Author(s)
      Isemura T, Kaga A, Tomooka N, Vaughan DA, 他3名
    • Journal Title

      Annals of Botany 100

      Pages: 1053-1071

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genome dissection of traits related to domestication in azuki bean(Vigna angularis)and comparison with other warm-season legumes2007

    • Author(s)
      Isemura
    • Journal Title

      Annals of Botany 100

      Pages: 1053-1071

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic diversity of the mungbean(Vigna radiata,Leguminosae)genepool on the basis of microsatellite analysis2007

    • Author(s)
      Sangiri
    • Journal Title

      Australian Journal of Botany 55

      Pages: 837-847

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ケツルアズキ(Vigna mungo)とアズキ(V.angularis)の栽培化関連形質QTLの比較2007

    • Author(s)
      加賀秋人
    • Journal Title

      育種学研究 9・別1

      Pages: 262-262

    • Related Report
      2006 Annual Research Report
  • [Journal Article] アズキSSRマーカーによるツルアズキ連鎖地図の構築2007

    • Author(s)
      伊勢村武久
    • Journal Title

      育種学研究 9・別1

      Pages: 104-104

    • Related Report
      2006 Annual Research Report
  • [Journal Article] ケツルアズキ多器官大型化突然変異体(MOG)の育成特性2007

    • Author(s)
      友岡憲彦
    • Journal Title

      熱帯農業 51・別1

      Pages: 71-72

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Development of a black gram [Vigna mungo (L.) Hepper] linkage map and its comparison with an azuki bean [Vigna angularis (Willd.) Ohwi and Ohashi] linkage map.2006

    • Author(s)
      Chaitieng B, Kaga A, Tomooka N, Isemura T, Vaughan DA, 他1名
    • Journal Title

      Theoretical and Applied Genetics 113(7)

      Pages: 1261-1269

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Development of an interspecific Vigna linkage map between Vigna umbellata (Thunb.) Ohwi & Ohashi and V. nakashimae (Ohwi) Ohwi & Ohashi and its use in analysis of bruchid resistance and comparative genomics.2006

    • Author(s)
      Somta P, Kaga A, Tomooka N, Isemura T, Srinives P, Vaughan DA, 他1名
    • Journal Title

      Plant Breeding 125

      Pages: 77-84

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Development of a black gram [Vigna mungo (L.) Hepper] linkage map and its comparison with an azuki bean[Vigna angularis(Willd.)Ohwi and Ohashi] linkage map2006

    • Author(s)
      Chaitieng B
    • Journal Title

      Theoretical and Applied Genetics 113・7

      Pages: 1261-1269

    • Related Report
      2006 Annual Research Report
  • [Journal Article] アジアVigna属の植物遺伝資源の多様性とその育種的利活用(第五報)多様性保全と今後の研究展開2006

    • Author(s)
      友岡憲彦
    • Journal Title

      熱帯農業 50・4

      Pages: 179-182

    • Related Report
      2006 Annual Research Report
  • [Journal Article] アズキ栽培種と野生種との雑種集団を用いた栽培化及び適応度関連形質のQTL解析2006

    • Author(s)
      伊勢村武久
    • Journal Title

      育種学研究 8・別2

      Pages: 131-131

    • Related Report
      2006 Annual Research Report
  • [Presentation] The soybean : Evolution of the world most important legume RGJ - Ph.D.2009

    • Author(s)
      Kaga A
    • Organizer
      Congress X
    • Related Report
      2008 Final Research Report
  • [Presentation] アズキSSRマーカーによるリョクトウ連鎖地図の構築2008

    • Author(s)
      伊勢村武久
    • Organizer
      日本育種学会
    • Place of Presentation
      滋賀県立大学
    • Year and Date
      2008-10-02
    • Related Report
      2008 Annual Research Report
  • [Presentation] アズキSSRマーカーによるリョクトウ連鎖地図の構築2008

    • Author(s)
      伊勢村武久, 加賀秋人, 友岡憲彦, Vaughan D. A
    • Organizer
      育種学研究 10(別2)
    • Related Report
      2008 Final Research Report
  • [Presentation] Genetic diversity of the mungbean (Vigna radiata) genepool based on microsatellite (SSR) analysis2008

    • Author(s)
      Vaughan D, Sangiri C, Kaga A, Tomooka N, Isemura T, Srinives P, 他1名
    • Organizer
      育種学研究 10(別1)
    • Related Report
      2008 Final Research Report
  • [Presentation] アズキSSRマーカーを利用したツルアズキの多様性解析とコアコレクションの設定2008

    • Author(s)
      伊勢村武久, 友岡憲彦, 加賀秋人, ダンカン・ヴォーン, 他1名
    • Organizer
      熱帯農業研究 1(Extra issue 1)
    • Related Report
      2008 Final Research Report
  • [Presentation] 食用マメ科作物におけるDNAマーカー開発の現状と展望2007

    • Author(s)
      加賀 秋人
    • Organizer
      かずさDNA研究所ワークショップ作物DNAマーカー-選抜と品種識別への活用-
    • Place of Presentation
      かずさアーク
    • Year and Date
      2007-12-17
    • Related Report
      2007 Annual Research Report
  • [Presentation] ツルアズキ(Vigna umbellata)の栽培化関連形質に関するQTL解析2007

    • Author(s)
      伊勢村 武久
    • Organizer
      日本育種学会
    • Place of Presentation
      山形大学
    • Year and Date
      2007-09-23
    • Related Report
      2007 Annual Research Report
  • [Presentation] アズキと近縁野生種の戻し交雑後代における適応度関連形質の遺伝解析2007

    • Author(s)
      加賀 秋人
    • Organizer
      日本育種学会
    • Place of Presentation
      山形大学
    • Year and Date
      2007-09-22
    • Related Report
      2007 Annual Research Report
  • [Presentation] アズキと近縁野生種の戻し交雑後代における適応度関連形質の遺伝解析2007

    • Author(s)
      加賀秋人, 友岡憲彦, 伊勢村武久, 黒田洋輔, Vaughan D. A
    • Organizer
      育種学研究9(別2)
    • Related Report
      2008 Final Research Report
  • [Presentation] 食用マメ科作物におけるDNAマーカー開発の現状と展望2007

    • Author(s)
      加賀秋人
    • Organizer
      かずさDNA研究所ワークショップ 作物DNAマーカー -選抜と品種識別への活用-
    • Related Report
      2008 Final Research Report
  • [Presentation] ツルアズキ(Vigna umbellata)の栽培化関連形質に関するQTL解析2007

    • Author(s)
      伊勢村武久, 加賀秋人, 友岡憲彦, Vaughan D. A
    • Organizer
      育種学研究 9(別2)
    • Related Report
      2008 Final Research Report
  • [Presentation] ケツルアズキ(Vigna mungo)とアズキ(V. angularis)の栽培化関連形質QTLの比較2007

    • Author(s)
      加賀秋人, Chaitieng B, 友岡憲彦, 伊勢村武久, Vaughan D. A, 他1名
    • Organizer
      育種学研究 9(別1)
    • Related Report
      2008 Final Research Report
  • [Presentation] ケツルアズキ多器官大型化突然変異体(MOG)の生育特性2007

    • Author(s)
      友岡憲彦, 加賀秋人, ブッパ・チャイティエン, ピラサック・スリニヴェス, プラキット・ソムタ,ダンカン・ヴォーン, 伊勢村武久, 他2名
    • Organizer
      熱帯農業 51(別1)
    • Related Report
      2008 Final Research Report
  • [Presentation] アズキSSRマーカーによるツルアズキ連鎖地図の構築2007

    • Author(s)
      伊勢村武久, 加賀秋人, 友岡憲彦, Vaughan D. A
    • Organizer
      育種学研究 9(別1)
    • Related Report
      2008 Final Research Report
  • [Presentation] アズキ栽培種と野生種との雑種集団を用いた栽培化及び適応度関連形質のQTL解析2006

    • Author(s)
      伊勢村武久, 加賀秋人, 友岡憲彦, Vaughan A. D, 他1名
    • Organizer
      育種学研究 8(別2)
    • Related Report
      2008 Final Research Report
  • [Presentation] アジアVigna属植物遺伝資源の多様性解析と育種的利活用に関する研究2006

    • Author(s)
      友岡憲彦, 加賀秋人, Vaughan D
    • Organizer
      熱帯農業 50(5)
    • Related Report
      2008 Final Research Report
  • [Presentation] Asian Vigna genome study2006

    • Author(s)
      Kaga A, Isemura T, Tomooka N, Vaughan A. D
    • Organizer
      The Kazusa Conference of Legume Genetics and Genomics in Asia
    • Related Report
      2008 Final Research Report
  • [Presentation] NIAS Domestication, superdomestication and gigantism : Human manipulation of plant genomes for increasing crop yield2006

    • Author(s)
      Vaughan D, Kaga A, Tomooka N, Isemura T, Chaitieng B, 他1名
    • Organizer
      The Asian Vigna and azuki bean : domestication persipectives OECD
    • Related Report
      2008 Final Research Report
  • [Book] Molecular markers in Vigna improvement: Understanding and using gene pools Molecular Marker Systems in Plant Breeding and Crop Improvement55(II.6)2008

    • Author(s)
      Kaga A, Vaughan D.A, Tomooka N
    • Related Report
      2008 Final Research Report
  • [Remarks]

    • URL

      http://www.gene.affrc.go.jp/databases-marker_information.php

    • Related Report
      2008 Annual Research Report
  • [Remarks]

    • URL

      http://www.gene.affrc.go.jp/databeses-marker_information_en.php

    • Related Report
      2007 Annual Research Report

URL: 

Published: 2006-04-01   Modified: 2016-04-21  

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