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Combined analysis of feedback loops consisting of G proteins and phospholipid in the formation of neural cirnuitry

Research Project

Project/Area Number 18500295
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Neurochemistry/Neuropharmacology
Research InstitutionKyoto University

Principal Investigator

NAKAMURA Takeshi  Kyoto University, Graduate School of Biostudios, Assistant Professor (60362604)

Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,910,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥210,000)
Fiscal Year 2007: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2006: ¥3,000,000 (Direct Cost: ¥3,000,000)
KeywordsFRET / simulation / neurite outgrowth / feedback / SHIP2 / nerve growth factor / PIP_3 / Rac1 / シグナル伝達 / 神経科学 / 可視化
Research Abstract

Neurite outgrowth upon extracellular cues is an essential event in early neuronal differentiation. Rac1 and Cdc42, members of Rho family GTPases, are involved in this process as regulators of actin cytoskeletal reorganization. I previously showed that NGF/TrkA. Signaling drives the cycling of a positive feedback loop comprised of PI3-kinase, Vav2/Vav3, Rac1/Cdc42, and actin cytoskeleton at neurite tips of PC12 cells using FRET imaging and RNAi techniques. In this study, I have demonstrated that SHIP2 is a critical component of the negative feedback on PIP_3 in NGF-induced neurite outgrowth. This negative feedback loop has been unexpected previously. Acute inhibition of TrkA transiently decreased Rac1/Cdc42 activity and the PIP_3 level to below basal levels, indicating the presence of NGF-dependent negative regulation. With the help of in Silico simulation, I speculated that the activation of PI-5-phosphatase for PIP_3 was involved. In agreement with this model, depletion of SHIP2 by RN … More A interference attenuated the inhibitor-induced super-suppression of Rac1/Cdc42 activity and the level of PIP_3. The critical role of SHIP2 in neurite outgrowth of PC12 cells was further supported by the finding that depletion of SHIP2 and PTEN, phosphatases for PIP_3, markedly potentiated NGF-induced Rac1/Cdc42 activation and PIP_3 accumulation, and significantly increased the number and the length of neurites. This increase in neurite number is possibly due to that the depletion of SHIP2 and PTEN disturbs the proper localization of PIP_3 and Rac1/Cdc42 activities. Further refinement of the computational model predicted a negative feedback from Rac1 to SHIP2, which was validated experimentally. I propose that the SHIP2-mediated negative feedback on PIP_3 coordinately works with the PI3-kinase-mediated positive feedback to form an initial protrusive pattern determined by Turing's reaction-diffusion system, and later, to punctuate the PIP_3 accumulation to maintain proper neurite outgrowth. This study emphasizes a useful intertwining of FRET imaging and system biology. Less

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (35 results)

All 2008 2007 2006

All Journal Article (20 results) (of which Peer Reviewed: 4 results) Presentation (12 results) Book (3 results)

  • [Journal Article] FRETイメージングによる神経突起伸展シグナルの解析2008

    • Author(s)
      中村岳史、青木一洋、松田道行
    • Journal Title

      細胞 (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Analysis of signaling pathways of neurite outgrowth by FRET imaging2008

    • Author(s)
      T., Nakamura, et. al.
    • Journal Title

      Saibou (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Purification and Characterization of Heteroscorpine-1(HS-1)toxin from Heterometrus laoticus Scorpion Venom2007

    • Author(s)
      N. Uawonggul, 他11名
    • Journal Title

      Toxicon 49

      Pages: 19-29

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] An essential role for the SHIP2-dependent negative feedback loop in neuritogenesis of nerve growth factor-stimulated PC12 cells2007

    • Author(s)
      K. Aoki, T. Nakamura, T. Inoue, T. Meyer, M. Matsuda
    • Journal Title

      J. Cell Biol 177

      Pages: 817-827

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] FRETイメージングとシミュレーションによる神経突起伸展シグナルの解析2007

    • Author(s)
      中村岳史、青木一洋、松田道行
    • Journal Title

      実験医学 25

      Pages: 1676-1683

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
  • [Journal Article] 細胞内シグナル伝達のFRETプローブによる可視化2007

    • Author(s)
      中村岳史、松田道行
    • Journal Title

      Medical Bio 4(7)

      Pages: 50-54

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Purification and Characterization of Heteroscorpine-1 (HS-1) toxin from Heterometrus laoticus Scorpion Venom2007

    • Author(s)
      N., Uawonggul, et. al.
    • Journal Title

      Toxicon 49

      Pages: 19-29

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] An essential role for the SHIP2-dependent negative feedback loop in neuritogenesis of nerve growth factor-stimulated PC12 cells2007

    • Author(s)
      K., Aoki, et. al.
    • Journal Title

      J. Cell Biol 177

      Pages: 817-827

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Analysis of signaling pathways of NGF-induced neuritogenesis by FRET imaging and in silico simulation2007

    • Author(s)
      T., Nakamura, et. al.
    • Journal Title

      Jitsuken Igaku 25

      Pages: 1676-1683

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Visualization of signal transduction by FRET probes2007

    • Author(s)
      T., Nakamura, et. al.
    • Journal Title

      Medical Bio 4(7)

      Pages: 50-54

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Fundament and application of FRET in Histochemistry and Cytochemistry 20072007

    • Author(s)
      T., Nakamura, et. al.
    • Pages
      129-139
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Analysis by intermolecular FRET in Handbook of molecular interaction2007

    • Author(s)
      T., Nakamura, M., Matsuda
    • Pages
      80-84
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] An essential role for the SHIP2-dependent negative feedback loop in neuritogenesis of nerve growth factor-stimulated PC12 cells2007

    • Author(s)
      K. Aoki, T. Nakamura, T. Inoue, T. Meyer, M. Matsuda
    • Journal Title

      J. Cell Biol. 177

      Pages: 817-827

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 細胞内シグナルのFRETプローブによる可視化2007

    • Author(s)
      中村岳史、松田道行
    • Journal Title

      Medical Bio 4

      Pages: 50-54

    • Related Report
      2007 Annual Research Report
  • [Journal Article] GTP hydrolysis by the Rho-family GTPase TC10 promotes exocytic vesicle fusion2006

    • Author(s)
      K. Kawase, T. Nakamura, 他8名
    • Journal Title

      Dev. Cell 11

      Pages: 411-421

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Regulation of RalA GTPase by phosphatidylinositol 3-kinase as visualized by FRET probes2006

    • Author(s)
      H. Yoshizaki, K. Aoki, T. Nakamura, M. Matsuda
    • Journal Title

      Biochem. Soc. Trans. 34

      Pages: 851-854

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] GTP hydrolysis by the Rho-family GTPase TC10 promotes exocytic vesicle fusion2006

    • Author(s)
      K., Kawase, et. al.
    • Journal Title

      Dev. Cell 11

      Pages: 411-421

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Regulation of RalA GTPase by phosphatidylinositol 3-kinase as visualized by FRET probes2006

    • Author(s)
      H., Yoshizaki, et. al.
    • Journal Title

      Biochem. Soc. Trans 34

      Pages: 851-854

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] GTP hydrolysis by the Rho family GTPase TC10 promotes exocytic vesicle fusion.2006

    • Author(s)
      K.Kawase, T.Nakamura, A.Takaya, K.Aoki, K.Namikawa, H.Kiyama, S.Inagaki, H.Takemoto, A.R Saltiel, M.Matsuda
    • Journal Title

      Dev. Cell 11

      Pages: 411-421

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Analysis of the spatiotemporal activation of rho GTPases using Raichu probes.2006

    • Author(s)
      T.Nakamura, K.Kurokawa, E.Kiyokawa, M.Matsuda
    • Journal Title

      Methods Enzymol 406

      Pages: 315-332

    • Related Report
      2006 Annual Research Report
  • [Presentation] FRETイメージングとシミュレーションによる神経突起伸展シグナルの解析2007

    • Author(s)
      青木一洋、中村岳史、松田道行
    • Organizer
      第30回日本分子生物学会年会・第80回日本生化学会大会合同大会
    • Place of Presentation
      横浜
    • Year and Date
      2007-12-12
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Analysis of signaling pathways of neurite outgrowth by FRET imaging and in silico simulation2007

    • Author(s)
      K., Aoki, et. al.
    • Organizer
      30th annual meeting of MBSJ and 80th annual meeting of JBS
    • Place of Presentation
      Yokohama
    • Year and Date
      2007-12-12
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] NGF-PI3K-Rac1情報伝達経路のin vivoとin silico解析:SHIP2とPTENは神経突起形成を負に制御する2007

    • Author(s)
      青木一洋、中村岳史、松田道行
    • Organizer
      第30回日本分子生物学会年会・第80回日本生化学会大会合同大会
    • Place of Presentation
      横浜
    • Year and Date
      2007-12-12
    • Related Report
      2007 Annual Research Report
  • [Presentation] Development of FRET-based probes for the monitoring of Rab5 activityin living cells2007

    • Author(s)
      M. Kitano, T. Nakamura, M. Matsuda
    • Organizer
      Gordon research conference mechanisms of cell signaling
    • Place of Presentation
      Oxford, UK
    • Year and Date
      2007-09-18
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Development of FRET-based probes for the monitoring of Rab5 activity in living cells2007

    • Author(s)
      M., Kitano, et. al.
    • Organizer
      Gordon research conference : mechanisms of cell signaling
    • Place of Presentation
      Oxford, UK
    • Year and Date
      2007-09-18
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Development of FRET-based probes for the monitoring of Rab5 activity in living cells2006

    • Author(s)
      M. Kitano, T. Nakamura, M. Matsuda
    • Organizer
      American Society for Cell Biology 2006
    • Place of Presentation
      San Diego, USA
    • Year and Date
      2006-12-11
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] SHIP2 and PTEN negatively regulate PIP_3 level and Rac1/Cdc42 activities to initiate proper neuritogenesis in NGF-stimulated PC12 cells2006

    • Author(s)
      K. Aoki, T. Nakamura, M. Matsuda
    • Organizer
      FASEB summer research conferences:Regulation and function of small GTPases
    • Place of Presentation
      Vermont, USA
    • Year and Date
      2006-07-17
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] SHIP2 and PTEN negatively regulate PIP3 level and Racl/ Cdc42 activities to initiate proper neuritogenesis in NGF-stimulated PC12 cells2006

    • Author(s)
      K., Aoki, et. al.
    • Organizer
      FASEB summer research conferences : Regulation and function of small GTPases
    • Place of Presentation
      Vermont, USA
    • Year and Date
      2006-07-17
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] In vivo and in silico analysis of the dynamics of NGF-PI3K-Rac1/Cdc42signaling networks during neuritogenesis of PC12 cells2006

    • Author(s)
      K. Aoki, T. Nakamura, M. Matsuda
    • Organizer
      20th IUBMB international congress of biochemistry and molecular biology
    • Place of Presentation
      京都
    • Year and Date
      2006-06-20
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Development of FRET-based probes for the monitoring of Rab5 activity in living cells2006

    • Author(s)
      M. Kitano, T. Nakamura, M. Matsuda
    • Organizer
      20th IUBMB international congress of biochemistry and molecular biology
    • Place of Presentation
      京都
    • Year and Date
      2006-06-19
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Development of FRET-based probes for the monitoring of Rab5 activity in living cells2006

    • Author(s)
      M., Kitano, et. al.
    • Organizer
      20th IUBMB international congress of Biochemistry and molecular biology
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-06-19
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] In vivo and in silico analysis of the dynamics of NGF-PI3K-Racl/Cdc42 signaling networks during neuritogenesis of PC12 cells stimulated PC12 cells2006

    • Author(s)
      K., Aoki, et. al.
    • Organizer
      20th IUBMB international congress of Biochemistry and molecular biology
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-06-19
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] 組織細胞科学2007 FRETの基礎と応用2007

    • Author(s)
      中村岳史、青木一洋、松田道行
    • Total Pages
      11
    • Publisher
      日本組織細胞化学会編
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] 分子間相互作用ハンドブック 2分子FRETによる解析法2007

    • Author(s)
      中村岳史、松田道行
    • Total Pages
      5
    • Publisher
      羊土社
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] 2分子FRET法による解析法、分子間相互作用解析ハンドブック(80-84頁)2007

    • Author(s)
      中村岳史、松田道行
    • Total Pages
      5
    • Publisher
      羊土社
    • Related Report
      2007 Annual Research Report

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Published: 2006-04-01   Modified: 2016-04-21  

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