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Real time and molecular level observation of damage processes of DNA due to ultraviolet ultrashort pulse irradiation

Research Project

Project/Area Number 18510051
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Risk sciences of radiation/Chemicals
Research InstitutionJapan Atomic Energy Agency

Principal Investigator

HIROSHI Murakami  Japan Atomic Energy Agency, Advanced Photon Research Center, Research Scientist (50291092)

Co-Investigator(Kenkyū-buntansha) AKAMATSU Ken  Japan Atomic Energy Agency, Division of Environment and Radiation, Research Scientist (70360401)
Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,530,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥330,000)
Fiscal Year 2007: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2006: ¥2,100,000 (Direct Cost: ¥2,100,000)
KeywordsDNA / damage due to ultraviolet radiation / two photon absorption / ultrafast spectroscopy / 鎖切断
Research Abstract

1. Development of transient absorption spectroscopy measurement system : We have programmed for control of a spectrometer with a multi-channel detector, mechanical shutters, optical delay line, and movable stage positioning a sample. Further we have attained a temporal resolution of about 200 fs by optimizing the optical alignment. Thus we have almost completed the development of the measurement system for molecular-level and femtosecond time-resolved observation of DNA after UV pulse irradiation.
2. Preparation of DNA film and examination of radiation damage : We prepared pUC18 plasmid DNA using a plasmid DNA purification kit with Bacillus coli, casted the DNA aqueous solution onto a quartz glass plate, and made a dried film under Ar atmosphere. Damaged DNA was examined by an agarose gel electrophoresis.
3. Measurement of how features of damaged DNA depend on the intensity and total photon number of the irradiated UV (266nm) pulse: We have made the measurement under the light intensity from a few ten MW/cm^2 to several ten GW/cm^2. It has been found that single-strand broken DNA, double-strand broken DNA, and DNA dimer generate, and that the amount of them increases with increasing the total photon number. On the other hand, the double-strand broken DNA appears above the threshold of a few GW/cm^2, and the amount of it increases with increasing the intensity. This suggests that the ionization due to the two-photon absorption of the UV pulse induces the double-strand break. Real-time probe of the intensity of the UV pulse, which fluctuates with time, has been accomplished, which allows us to get higher signal to noise ratio of the data.
The future plan is as follows : 1) Analysis on dependence of the feature of damaged DNA on the intensity and total photon number of the irradiated light ; 2) femtosecond transient absorption spectroscopy of DNA.

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (11 results)

All 2008 2007 Other

All Journal Article (4 results) (of which Peer Reviewed: 2 results) Presentation (4 results) Book (2 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] A novel methodology for characterizing strand-break termini and damaged bases in plasmid DNA exposed to ionizing radiation2007

    • Author(s)
      K.Akamatsu
    • Journal Title

      Analytical Biochemistry 362

      Pages: 229-235

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Real-time stress analysis of Ge nanodot growth on H-terminated Si(111) -1x1 and Si(111) -7x7 surfaces2007

    • Author(s)
      K. Akamatsu
    • Journal Title

      Analytical Biochemistry 362

      Pages: 229-235

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] A novel methodology for characterizing strand-break termini and damaged bases in plasmid DNA exposed to ionizing radiation2007

    • Author(s)
      K. Akamatsu
    • Journal Title

      Analytical Biochemistry 362

      Pages: 229-235

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Direct measurement of reconstructed surface stress in Si(111) -7x7 and Ge(111) -5x5

    • Author(s)
      K. Akamatsu
    • Journal Title

      In : New Research on DNA Damage(editorial book, Nova Science Publishers Inc., NY), to be published.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 逆ミセル中タンパク質水溶液のテラヘルツ分光2008

    • Author(s)
      村上 洋, ら
    • Organizer
      日本物理学会
    • Place of Presentation
      東大阪市
    • Year and Date
      2008-03-25
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] THz spectroscopy of protein aqueous solution in a reversed micelle2008

    • Author(s)
      H. Murakami
    • Organizer
      The Physical Society of Japan, 64rd annual meeting
    • Place of Presentation
      Higashiosaka city, Japan
    • Year and Date
      2008-03-25
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Low-frequency Vibrational Motions of Liquids and Biomolecules in the Nonequilibrium State studied by Terahertz Spectroscopy2007

    • Author(s)
      H.Murakami, et. al.
    • Organizer
      XXIII international conference on photochemistry
    • Place of Presentation
      Cologne,Germany
    • Year and Date
      2007-07-31
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Low-frequency Vibrational Mtions of Liquids and Biomolecules in the Nonequilibrium State studied by Terahertz Spectroscopy2007

    • Author(s)
      H. Murakami
    • Organizer
      XXIIIinternational conference n photochemistry
    • Place of Presentation
      Cologne, Germany
    • Year and Date
      2007-07-31
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] New Research on DNA Damage, to be published2008

    • Author(s)
      K.Akamatsu
    • Publisher
      Nova Science Publishers Inc.,NY (editorial book)
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] New Research on DNA Damage, to be published2008

    • Author(s)
      K. Akamatsu
    • Publisher
      Nova Science Publishers Inc.,NY(editorial book)(掲載確定)(未定)
    • Related Report
      2007 Annual Research Report
  • [Patent(Industrial Property Rights)] ホスホジエステラーゼを用いたDNA損傷スペクトル分析法2007

    • Inventor(s)
      赤松 憲
    • Industrial Property Number
      2007-194355
    • Filing Date
      2007-07-26
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary

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Published: 2006-04-01   Modified: 2016-04-21  

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