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Biosynthesis of Plant Polyketides; Structure Function Analyses of Novel Type III Polyketide Syntheses

Research Project

Project/Area Number 18510190
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Living organism molecular science
Research InstitutionUniversity of Shizuoka

Principal Investigator

ABE Ikuro  University of Shizuoka, School of Pharmaceutical Sciences, Lecturer (40305496)

Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,940,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥240,000)
Fiscal Year 2007: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2006: ¥2,900,000 (Direct Cost: ¥2,900,000)
KeywordsPlant Polyketide Synthase / Chalcone Svnthase / Type III Polyketide Synthase / Structure Function Analvsis / Biosynthesis / Engineered Biosynthesis / Bioloeil Activity / Secondary Metabolism / 酵素機能改変 / 二次代謝酵素 / 生理活性物質 / 非天然型天然物
Research Abstract

1. Pentaketide chromone synthase (PCS) from Aloe arborescens is a novel plant-specific type III polyketide synthase (PKS) that produces 5, 7-dihydroxy-2-methylchromone from five molecules of malonyl-CoA. On the basis of the crystal structures of wild-type and M207G mutant PCS, F80A/Y82A/M207G triple mutant was constructed and shown to produce an unnatural novel nonaketide naphthopyrone by sequential condensations of nine molecules of malonyl-CoAs. This is the first demonstration of the formation of a nonaketide by the structurally simple type III PKS. A homology model predicted that the active-site cavity volume of the triple mutant is increased to four times of that of the wild-type PCS.
2. A novel aldo-keto reductase (AKR) was cloned and sequenced from roots of A. arborescens. A. arborescens AKR share similarities with known plant AKRs, maintaining most of the active-site residues conserved in the AKR superfamily enzymes.
3. Benzalacetone synthase from Rheum palmatum efficiently catalyzed condensation of N-methylanthraniloyl-CoA (or anthraniloyl-CoA) with malonyl-CoA (or methylmalonyl-CoA) to produce 4-hydroxy-2 (1H) -quinolones, a novel alkaloidal scaffold produced by a type III polyketide synthase (PKS). Manipulation of the functionally divergent type III PKSs by non-physiological substrate thus provides an efficient method for production of pharmaceutically important quinolone alkaloids.

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (46 results)

All 2008 2007 2006 Other

All Journal Article (34 results) (of which Peer Reviewed: 15 results) Presentation (8 results) Book (2 results) Remarks (2 results)

  • [Journal Article] Structure-based Engineering of A Plant Type III Polyketide Synthase:Formation of An Unnatural Nonaketide Naphthopyrone2007

    • Author(s)
      I.Abe^*, H.Morita, S.Oguro, H.Noma, K.Wanibuchi, N.Kawahara, Y.Goda, H.Noguchi, T.Kohno^*
    • Journal Title

      J.Am.Chem.Soc 129

      Pages: 5976-5980

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Structural Insight into Chain Length Control and Product Specificity of Pentaketide Chromone Synthase from Aloe arborescens2007

    • Author(s)
      H.Morita, S.Kondo, S.Oguro, H.Noguchi, S.Sugio^*, I.Abe^*, T.Kohno*
    • Journal Title

      Chemostry & Biology 14

      Pages: 359-369

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] An Acridone-Producing Novel Multifunctional Type III Polyketide Synthase from Huperzia serrata2007

    • Author(s)
      K.Wanibuchi, P.Zhang, T.Abe, H.Morita, T.Kohno, G.Chen, H.Noguchi, I.Abe^*
    • Journal Title

      FEBS J 274

      Pages: 1073-1082

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Enzymatic Synthesis of Cyclic Triterpenes2007

    • Author(s)
      I.Abe^*
    • Journal Title

      Nat.Prod.Rep 24

      Pages: 1311-1331

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] 植物ポリケタイド合成酵素による分子多様性の創出2007

    • Author(s)
      阿部 郁朗
    • Journal Title

      蛋白質核酸酵素 52

      Pages: 996-1002

    • NAID

      40015571064

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Structure-based Engineering of A Plant Type III Polyketide Synthase: Formation of An Unnatural Nonaketide Naphthopyrone2007

    • Author(s)
      I. Abe, H. Morita, S. Oguro, H. Noma, K. Wanibuchi, N. Kawahara, Y. Goda, H. Noguchi, T. Kohno
    • Journal Title

      J. Am. Chem. Soc 129

      Pages: 5976-5980

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Structural Insight into Chain Length Control and Product Specificity of Pentaketide Chromone Synthase from Aloe arborescens2007

    • Author(s)
      H. Morita, S. Kondo, S. Oguro, H. Noguchi, S. Sugio, I. Abe, T. Kohno
    • Journal Title

      Chemistry & Biology 14

      Pages: 359-369

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] An Acridone-Producing Novel Multifunctional Type III Polyketide Synthase from Huperzia serrata2007

    • Author(s)
      K. Wanibuchi, P. Zhang, T. Abe, H. Morita, T. Kohno, G. Chen, H. Noguchi, I. Abe
    • Journal Title

      FEBS J 274

      Pages: 1073-1082

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Enzymatic Synthesis of Cyclic Triterpenes2007

    • Author(s)
      I. Abe
    • Journal Title

      Nat. Prod. Rep 24

      Pages: 1311-1331

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Engineered Biosynthesis of Plant Polyketides2007

    • Author(s)
      I. Abe
    • Journal Title

      Tanpakushitsu Kakusan Kouso 52

      Pages: 996-1002

    • NAID

      40015571064

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Engineered Biosynthesis of Plant Polyketides2007

    • Author(s)
      I. Abe
    • Journal Title

      Farumashia 42

      Pages: 563-567

    • NAID

      40015571064

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Engineered Biosynthesis of Plant Polyketides2007

    • Author(s)
      I. Abe
    • Journal Title

      ACS Symposium Series #955, Polyketides: Synthesis, Biological Activity and Genetic Engineering, S. Baerson and A. Rimando, eds. American Chemical Society, Washington DC

      Pages: 109-127

    • NAID

      40015571064

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Structure-based Engineering of A Plant Type III Polyketide Synthase: Formation of An Unnatural Nonaketide Naphthopyrone2007

    • Author(s)
      I. Abe*, H. Morita, S. Oguro, H. Noma, K. Wanibuchi, N. Kawahara, Y. Goda, H. Noguchi, T. Kohno*
    • Journal Title

      J. Am. Chem. Soc. 129

      Pages: 5976-5980

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Insight into Chain Length Control and Product Specificity of Pentaketide Chromone Synthase from Aloe arborescens2007

    • Author(s)
      H. Morita, S. Kondo, S. Oguro, H. Noguchi, S. Sugio*, I. Abe*, T. Kohno*
    • Journal Title

      Chemistry & Biology 14

      Pages: 359-369

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An Acridone-Producing Novel Multifunctional Type III Polyketide Synthase from Huperzia serrata2007

    • Author(s)
      K. Wanibuchi, P. Zhang, T. Abe, H. Morita, T. Kohno, G. Chen, H. Noguchi, I. Abe*
    • Journal Title

      FEBS J. 274

      Pages: 1073-1082

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Enzymatic Formation of Quinolone Alkaloids by A PIant Type III Polyketide Synthase2006

    • Author(s)
      I.Abe^*, T.Abe, K.Wanibuchi, H.Noguchi
    • Journal Title

      Org.Lett 8

      Pages: 6063-6065

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Engineered Biosynthesis of Plant Polyketides:Manipulation of Chalcone Synthase2006

    • Author(s)
      I.Abe^*, T.Watanabe, H.Morita, T.Kohno, H.Noguchi
    • Journal Title

      Org.Lett 8

      Pages: 499-502

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Enzymatic Formation of an Unnatural Methylated Triketide by Plant Type III Polvketide Synthases2006

    • Author(s)
      T.Abe, H.Noma, H.Noguchi, I.Abe^*
    • Journal Title

      Tetrahedron Lett 47

      Pages: 8727-8730

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Crystallization and Preliminary Crystallographic Analysis of A novel Plant Type III Polyketide Synthase That Produces Pentaketide Chromone2006

    • Author(s)
      H.Morita, S.Kondo, T.Abe, H.Noguchi, S.Sugio^*, I.Abe^*, T.Kohno^*
    • Journal Title

      Acta Cryst, F 62

      Pages: 899-901

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Enzymatic Formation of Pyrrole-Containing Novel Unnatural Cyclic Polyprenoids by Bacterial Squalene:Hopene Cyclase2006

    • Author(s)
      H.Tanaka, H.Noma, H.Noguchi, I.Abe^*
    • Journal Title

      Tetrahedron Lett 8

      Pages: 499-502

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Active Site Residues Governing Substrate Selectivity and Polyketide Chain Length in Aloesone Synthase2006

    • Author(s)
      I.Abe^*, T.Watanabe, W.Lou, H.Noguchi
    • Journal Title

      FEBS J 273

      Pages: 208-218

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] 植物ポリケタイド合成酵素の生合成工学2006

    • Author(s)
      阿部 郁朗
    • Journal Title

      ファルマシア 42

      Pages: 563-567

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Enzymatic Formation of Quinolone Alkaloidss by A Plant Type III Polyketide Synthase2006

    • Author(s)
      I. Abe, T. Abe, K. Wanibuchi, H. Noguchi
    • Journal Title

      Organic Lett 8

      Pages: 6063-6065

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Engineered Biosynthesis of Plant Polyketides: Manipulation of Chalcone Synthase2006

    • Author(s)
      I. Abe, T. Watanabe, H. Morita, T. Kohno, H. Noguchi
    • Journal Title

      Organic Lett 8

      Pages: 499-502

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Enzymatic Formation of an Unnatural Methylated Triketide by Plant Type III Polyketide Synthases2006

    • Author(s)
      T. Abe, H. Noma, H. Noguchi, I. Abe
    • Journal Title

      Tetrahedron Lett 47

      Pages: 8727-8730

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Crystallization and Preliminary Crystallographic Analysis of A novel Plant Type III Polyketide Synthase That Produces Pentaketide Chromone2006

    • Author(s)
      H. Morita, S. Kondo, T. Abe, H. Noguchi, S. Sugio, I. Abe, T. Kohno
    • Journal Title

      Acta Crystallogr F62

      Pages: 899-901

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Enzymatic Formation of Pyrrole-Containing Novel Unnatural Cyclic Polyprenoids by Bacterial Squalene: Hopene Cyclase2006

    • Author(s)
      H. Tanaka, H. Noma, H. Noguchi, I. Abe
    • Journal Title

      Tetrahedron Lett 47

      Pages: 3085-3089

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Active Site Residues Governing Substrate Selectivity and Polyketide Chain Length in Aloesone Synthase2006

    • Author(s)
      I. Abe, T. Watanabe, W. Lou, H. Noguchi
    • Journal Title

      FEBS J 273

      Pages: 208-218

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Enzymatic Formation of quinolone alkaloidss by A Plant Type III Polyketide Synthase2006

    • Author(s)
      I.Abe*, T.Abe, K.Wanibuchi, H.Noguchi
    • Journal Title

      Org. Lett. 8

      Pages: 6063-6065

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Enzymatic Formation of an Unnatural Methylated Triketide by Plant Type III Polyketide Synthases2006

    • Author(s)
      T.Abe, H.Nama, H.Noguchi, I.Abe*
    • Journal Title

      Tetrahedron Lett. 47

      Pages: 8727-8730

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Cyrstallization and Preliminary Crystallographic Analysis of a novel Plant Type III Polyketide Synthase That Produces Pentaketide Chromone2006

    • Author(s)
      H.Morita, S.Kondo, T.Abe, H.Noguchi, S.Sugio*, I.Abe*, T.Kohno*
    • Journal Title

      Acta Cryst. F 62

      Pages: 899-901

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Enzymatic Formation of Pyrrole-Containing Novel Unnatural Cyclic Polyprenoids by Bacterial Squalene : Hopene Cyclase2006

    • Author(s)
      H.Tanaka, H.Noma, H.Noguchi, I.Abe*
    • Journal Title

      Tetrahedron Lett. 47

      Pages: 3085-3089

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Engineered Biosynthesis of Plant Polyketides : Manipulation of Chalcone Synthase2006

    • Author(s)
      I.Abe*, T.Watanabe, H.Morita, T.Kohno, H.Noguchi
    • Journal Title

      Org. Lett. 8

      Pages: 499-502

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Active Site Residues Governing Substrate Selectivity and Polyketide Chain Length in Aloesone Synthase2006

    • Author(s)
      I.Abe*, T.Watanabe, W.Lou, H.Noguchi
    • Journal Title

      FEBS J. 273

      Pages: 208-218

    • Related Report
      2006 Annual Research Report
  • [Presentation] 天然物の生合成工学に関する研究2008

    • Author(s)
      阿部 郁朗
    • Organizer
      第128回日本薬学会年会学術振興賞受賞講演
    • Place of Presentation
      横浜
    • Year and Date
      2008-03-28
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 天然物の生合成工学に関する研究2008

    • Author(s)
      阿部郁朗
    • Organizer
      第128回 日本薬学会年会 学術振興賞受賞講演
    • Place of Presentation
      横浜
    • Year and Date
      2008-03-28
    • Related Report
      2007 Annual Research Report
  • [Presentation] 天然薬物の生合成工学2007

    • Author(s)
      阿部 郁朗
    • Organizer
      第28回富山大学和漢医薬学総合研究所特別セミナー
    • Place of Presentation
      富山
    • Year and Date
      2007-12-01
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 天然薬物の生合成工学2007

    • Author(s)
      阿部 郁朗
    • Organizer
      日本生薬学会 第54回年会 学術貢献賞受賞講演
    • Place of Presentation
      名古屋
    • Year and Date
      2007-09-15
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Engineered Biosynthesis of Plant Polyketides2007

    • Author(s)
      I.Abe
    • Organizer
      ICOB-5 & ISCNP-25 IUPAC International Conference on Biodiversity and Natural Products
    • Place of Presentation
      Kyoto
    • Year and Date
      2007-07-27
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Enzymatic Synthesis of Cyclic Triterpenes2007

    • Author(s)
      I. Abe
    • Organizer
      TERPNET 2007 8th International Meeting on Biosynthesis and Function of Isoprenoids
    • Place of Presentation
      Strasbourg, France
    • Year and Date
      2007-05-01
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 植物由来III型ポリケタイド合成酵素の生合成工学2007

    • Author(s)
      阿部 郁朗
    • Organizer
      第127回 日本薬学会年会 シンポジウム
    • Place of Presentation
      富山
    • Year and Date
      2007-03-28
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Engineered Biosynthesis of Plant Polyketides2006

    • Author(s)
      I. Abe
    • Organizer
      ICOB-5 & ISCNP-25 IUPAC International Conference on Biodiversity and Natural Products
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-07-27
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] ACS Symposium Series #955, Polyketides:Synthesis, Biological Activity and Genetic Engineering2007

    • Author(s)
      I.Abe^*
    • Publisher
      Engineered Biosynthesis of Plant Polyketides
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] ACS Symposium Series #955, Polyketides : Synthesis, Biological Activity and Genetic Engineering2007

    • Author(s)
      I.Abe*
    • Publisher
      Engineered Biosynthesis of Plant Polyketides
    • Related Report
      2006 Annual Research Report
  • [Remarks] 「研究成果報告書概要(和文)」より

    • URL

      http://w3pharm.u-shizuoka-ken.ac.jp/~shoyaku/research/staff/abe1.html

    • Related Report
      2007 Final Research Report Summary
  • [Remarks]

    • URL

      http://w3pharm.u-shizuoka-ken.ac.jp/~shoyaku/research/staff/abel.html

    • Related Report
      2007 Annual Research Report

URL: 

Published: 2006-04-01   Modified: 2016-04-21  

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