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Functional analyses of heme-DNA coordination complex and its implication for novel functional materials

Research Project

Project/Area Number 18550148
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemistry related to living body
Research InstitutionFukuoka Institute of Technology (2007)
University of Tsukuba (2006)

Principal Investigator

MITA Hajime  Fukuoka Institute of Technology, Faculty of Engineering, Professor (00282301)

Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥4,060,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥360,000)
Fiscal Year 2007: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2006: ¥2,500,000 (Direct Cost: ¥2,500,000)
KeywordsG-quadruplex DNA / function and structure / Redox potential / Axial ligand / heme / dimerization / NMR / thermodynamics / 四重鎮DNA
Research Abstract

A G-quadruplex DNA is composed of stacked G-quartets, each of which involves the planar association of four guanine bases. The size and planarity of a G-quartet are well-suited for interacting with a porphyrin ring through π-π stacking. The complexation of G-quadruplex DNAs with porphyrin or metal-porphyrin derivatives has been studied to characterize their molecular recognition of each other as well as to, create catalytic DNAs that exhibit hemoprotein functions. We have demonstrated the formation of a stable coordination complex between heme, the iron(III)-protoporphyrin IX complex, and a parallel G-quadruplex DNA assembled from a single repeat sequence of the human telomere, TTAGGG. The heme-DNA complex was found to be remarkably similar, in various spectroscopic and functional properties, to hemoprotein such as myoglobin.

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (50 results)

All 2007 2006

All Journal Article (30 results) (of which Peer Reviewed: 10 results) Presentation (20 results)

  • [Journal Article] Roles of a short connecting disulfide bond in the stability and function of psychrophilic Shewanella violacea cytochrome c_52007

    • Author(s)
      Ogawa, K.
    • Journal Title

      Extremophiles 11

      Pages: 797-806

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Thermodynamics of dimerization of parallel quadruplex DNAs through the end-to-end stacking of 3'-terminal G-quartets2007

    • Author(s)
      Sakuma, N.
    • Journal Title

      Nucleci Acid Symp Ser. 51

      Pages: 245-246

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] 四重鎖DNAのダイナミクスとポルフィリン誘導体との相互作用2007

    • Author(s)
      山本 泰彦
    • Journal Title

      生物物理 47

      Pages: 23-28

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Roles of a short connecting disulfide bond in the stability and function of psychrophilic Shewanella violacea cytochrome c5.2007

    • Author(s)
      Ogawa, K
    • Journal Title

      Extremophiles 11

      Pages: 797-806

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Thermodynamics of dimerization of parallel quadruplex DNAs through the end-to-end stacking of 3'-terminal G-quartets.2007

    • Author(s)
      Sakuma, N.
    • Journal Title

      Nucleci Acid Symp Ser. 51

      Pages: 245-246

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Dimerization of parallel G-quadruplex DNA formed from TTAGGG and interaction between G-quadruplex DNA and porphyrin derivatives.2007

    • Author(s)
      Yamamoto, Y.
    • Journal Title

      Seibutu-Buturi 47

      Pages: 23-28

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Roles of a short connecting disulfide bond in the stability and function of schrohilic Shewanella violacea cochrome c_52007

    • Author(s)
      Ogawa, K.
    • Journal Title

      Extremophiles 11

      Pages: 797-806

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Themlodynamics of dimerization of parallel quadruplex DNAs through the end-to-end stacking of 3'-terminal G-quartets2007

    • Author(s)
      Sakuma, N.
    • Journal Title

      Nucleci Acid Symp Ser 51

      Pages: 245-246

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 四重鎖DNAのダイナミクスとポルフィリン誘導体との相互作用2007

    • Author(s)
      山本泰彦, 三田肇, 大山貴子
    • Journal Title

      生物物理 47

      Pages: 23-28

    • NAID

      110006201585

    • Related Report
      2006 Annual Research Report
  • [Journal Article] cDNA-derived amino acid sequences of myoglobins from nine species of whales and dolphins2006

    • Author(s)
      Iwanami, K.
    • Journal Title

      Comp.Biochem.Physiol B145

      Pages: 249-256

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Influence of a single amide group on the redox function of Pseudomonas aeruginosa cytochrome c_<551>2006

    • Author(s)
      Takahashi, Y.
    • Journal Title

      Chem.Lett. 35

      Pages: 528-529

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Formation of a complex of 5,10,15,20-tetrakis(N-methylpyridinium-4-yl)-21H,23H-porphyrin with G-quadruplex DNA2006

    • Author(s)
      Mita, H.
    • Journal Title

      Biochemistry 45

      Pages: 6765-6772

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Exogenous ligand binding property of a heme-DNA coordination complex2006

    • Author(s)
      Ohyama, T.
    • Journal Title

      Chem.Lett. 35

      Pages: 126-127

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Further enhancement of the thermostability of Hydrogenobacter thermophilus cytochrome c_<552>2006

    • Author(s)
      Takahashi, Y.
    • Journal Title

      Biochemistry 45

      Pages: 11005-11011

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] A spectroscopic index for estimating the age of amber2006

    • Author(s)
      Kimura, H.
    • Journal Title

      Bull.Chem.Soc.Jpn 79

      Pages: 451-453

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Effects of various cations on the dynamic and thermodynamics of the dimerization of G-quadruplex DNA2006

    • Author(s)
      Mita, H.
    • Journal Title

      Nucleic Acids Symp.Ser. 50

      Pages: 191-192

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] cDNA-derived amino acid sequences of myoglobins from nine species of whales and dolphins.2006

    • Author(s)
      Iwanami, K.
    • Journal Title

      Comp. Biochem. Physiol. B145

      Pages: 249-256

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Further enhancement of the thermostability of Hydrogenobacter therm ophilus cytochrome c552.2006

    • Author(s)
      Takahashi, Y.
    • Journal Title

      Biochemistry 45

      Pages: 11005-11011

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Formation of a complex of 5, 10, 1 5, 20-tetrakis(N-methylpyridinium-4-yl)-2 1H, 23H-porphyrin with G-quadruplex DNA.2006

    • Author(s)
      Mita, H
    • Journal Title

      Biochemistry 45

      Pages: 6765-6772

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Exogenous ligand binding property of a heme-DNA coordination complex.2006

    • Author(s)
      Ohyama, T.
    • Journal Title

      Chem. Lett. 35

      Pages: 126-127

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Influence of a single amide group on the redox function of Pseudomonas aeruginosa cytochrome c551.2006

    • Author(s)
      Takahashi, Y.
    • Journal Title

      Chem. Lett. 35

      Pages: 528-529

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] A spectroscopic index for estimating the age of amber.2006

    • Author(s)
      Kimura, H.
    • Journal Title

      Bull. Chem. Soc. Jpn. 79

      Pages: 451-453

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Effects of various cations on the dynamic and thermodynamics of the dimerization of G-quadruplex DNA.2006

    • Author(s)
      Mita, H.
    • Journal Title

      Nucleic Acids Symp. Ser. 50

      Pages: 191-192

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Formation of a complex of 5,10,15,20-tetrakis(N-methylpyridinium-4-yl)-21H,23H-porphyrin with G-quadruplex DNA.2006

    • Author(s)
      Mita, H., Ohyama, T., Tanaka Y., Yamamoto, Y.
    • Journal Title

      Biochemistr 45

      Pages: 6765-6772

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Exogenous ligand binding property of a heme-DNA coordination complex2006

    • Author(s)
      T.Ohyama, Y.Kato, H.Mita, Y.Yamamoto
    • Journal Title

      Chem. Lett 35

      Pages: 126-127

    • NAID

      10016908299

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Effects of various cations on the dynamics and thermodynamics of the dimerization of G-quadruplex DNA.2006

    • Author(s)
      Mita, H., Kato, Y., Ozawa, M., Fujisaki T., Yamamoto, Y.
    • Journal Title

      Nucleic Acids Symp. Ser. 50

      Pages: 191-192

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Influence of a single amide group on the redox function of Pseudomonas aeruginosa cytochrome c_551.2006

    • Author(s)
      Y.Takahashi, S.J.Takayama, S.Mikami, H.Mita, Y.Sambongi, Y.Yamamoto
    • Journal Title

      Chem. Lett. 35

      Pages: 528-529

    • NAID

      10017410068

    • Related Report
      2006 Annual Research Report
  • [Journal Article] A spectroscopic index for estimating the age of amber.2006

    • Author(s)
      H.Kimura, Y.Tsukada, H.Mita, Y.Yamamoto, R.Chujo, T.Yukawa
    • Journal Title

      Bull. Chem. Soc. Jpn. 79

      Pages: 451-453

    • NAID

      10017310270

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Further enhancement of the thermostability of Hydrogenobacter thermophilus cytochrome c_552.2006

    • Author(s)
      Takahashi, Y., Sasaki, H., Takayama, S.J., Mikami, S., Kawano S., Mita, H., Sambongi, Y., Yamamoto, Y.
    • Journal Title

      Biochemistry 45

      Pages: 11005-11011

    • Related Report
      2006 Annual Research Report
  • [Journal Article] cDNA-derived amino acid sequences of myoglobins from nine species of whales and dolphins.2006

    • Author(s)
      Iwanami, K., Mita, H., Yamamoto, Y., Fujise, Y., Yamada T., Suzuki, T.
    • Journal Title

      Comp. Biochem. Physiol B145

      Pages: 249-256

    • Related Report
      2006 Annual Research Report
  • [Presentation] Thermodynamics of dimerization of parallel quadruplex DNAs through the end-to-end stacking of 3'-terminal G-quartets2007

    • Author(s)
      Sakuma, N.
    • Organizer
      5th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      東京大学
    • Year and Date
      2007-11-20
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Thermodynamics of dimerization of parallel quadruplex DNAs through the end-to-end stacking of 3'-terminal G-quartets.2007

    • Author(s)
      Sakuma, N.
    • Organizer
      5th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Uviv. Tokyo, Japan
    • Year and Date
      2007-11-20
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Thermodynamics of dimerization of parallel quadruplex DNAs through the end-to-end stacking of 3'-terminal G-quartets2007

    • Author(s)
      Sakuma N.
    • Organizer
      5th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Univ.Tokyo,Tokyo,Japan
    • Year and Date
      2007-11-20
    • Related Report
      2007 Annual Research Report
  • [Presentation] Dimerization of Parallel G-quadruplex DNAs Formed from d(TTAG3)and the Related Sequences2007

    • Author(s)
      Sakuma, N.
    • Organizer
      16th Triennial Conference for the International Society of Magnetic Resonance
    • Place of Presentation
      Howard Beach Resort Kenting,Taiwan
    • Year and Date
      2007-10-15
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Dimerization of Parallel G-quadruplex DNAs Formed from d(TTAG3) and the Related Sequences.2007

    • Author(s)
      Sakuma, N.
    • Organizer
      16th Triennial Conference for the International Society of Magnetic Resonance
    • Place of Presentation
      Howard Beach Resort Kenting, Taiwan
    • Year and Date
      2007-10-15
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Dimerization of Parallel G-quadruplex DNAs Formed fromd (TTAG3)and the Related Sequences.2007

    • Author(s)
      Sakuma.N.
    • Organizer
      16th Triennial Conference for the International Society of Magnetic Resonance
    • Place of Presentation
      Howard Beach Resort Kenting Kenting,Taiwan
    • Year and Date
      2007-10-15
    • Related Report
      2007 Annual Research Report
  • [Presentation] Systematic arrangement of heme complexes in the framework of coordination space provided by G-quadruplex DNA2006

    • Author(s)
      Yamamoto, Y.
    • Organizer
      2nd International Symposium on Chemistry of Coordination Space
    • Place of Presentation
      Fukuoka,Japan
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Enhancement of the thermostability of Hydrogenobacter thermophilus Cytochrome c_552 through reinforcement of the hydrophobic core of the protein interior2006

    • Author(s)
      Yamamoto, Y.
    • Organizer
      9th International Symposium on Applied Bioinorganic Chemistry
    • Place of Presentation
      Napoli,Italy
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Structural and thermodynamic analyses of dimerization of G-quadruplex DNA and effects of various cations on the rmodynamics of the dimerization2006

    • Author(s)
      Mita, H.
    • Organizer
      XXIIND International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Gottingen,Germany
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Characterization of Internal Dynamics of Thermophile Hydrogenobacter thermophilus Cytochrome c Using High Pressure NMR2006

    • Author(s)
      Takayama, S.J.
    • Organizer
      XXIIND International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Gottingen,Germany
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Enhancement of thermostability of H.thermophilus cytochrome c_552 through stabilization of hydrophobic core2006

    • Author(s)
      Takayama, S.J.
    • Organizer
      4th International Conference on Porphyrins and Phthalocyanines
    • Place of Presentation
      Rome,Italy
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Non-native heme coordination structure emerging upon guaniding hydrochloric acid induced unfolding of Pseudomonas aeruginosa ferricytochrome c_5512006

    • Author(s)
      Tai, H.
    • Organizer
      4th International Conference on Porphyrins and Phthalocyanines
    • Place of Presentation
      Rome,Italy
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Influence of a single amide group in the close proximity of heme on the redox function of Pseudomonas aeruginosa cytochrome c_5512006

    • Author(s)
      Takahasi, Y.
    • Organizer
      4th International Conference on Porphyrins and Phthalocyanines
    • Place of Presentation
      Rome,Italy
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Systematic arrangement of heme complexes in the framework of coordination space provided by G-quadruplex DNA.2006

    • Author(s)
      Yamamoto, Y.
    • Organizer
      2nd International Symposium on Chemistry of Coordination Space
    • Place of Presentation
      Fukuoka, Japan
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Enhancement of the thermostability of Hydrogenobacter thermophilus Cytochrome c552 through reinforcement of the hydrophobic core of the protein interior.2006

    • Author(s)
      Yamamoto, Y.
    • Organizer
      9th International Symposium on Applied Bioinorganic Chemistry
    • Place of Presentation
      Napoli, Italy
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Structural and thermodynamic analyses of dimerization of G-quadruplex DNA and effects of various cations on the thermodynamics of the dimerization.2006

    • Author(s)
      Mita, H.
    • Organizer
      XXIIND International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Gottingen, Germany
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Characterization of Internal Dynamics of Thermophile Hydrogenobacter thermophilus Cytochrome c Using High Pressure NMR.2006

    • Author(s)
      Takayama, S. J.
    • Organizer
      XXIIND International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Gottingen Germany
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Enhancement of thermostability of H. thermophilus cytochrome c552 through stabilization of hydrophobic core.2006

    • Author(s)
      Takayama, S. J.
    • Organizer
      4th International Conference on Porphyrins and Phthalocyanines
    • Place of Presentation
      Rome, Italy
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Non-native heme coordination structure emerging upon guanidine hydrochloric acid induced unfolding of Pseudomonas aeruginosa ferricytochrome c551.2006

    • Author(s)
      Tai, H.
    • Organizer
      4th International Conference on Porphyrins and Phthalocyanines
    • Place of Presentation
      Rome, Italy
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Influence of a single amide group in the close proximity of heme on the redox function of Pseudomonas aeruginosa cytochrome c5512006

    • Author(s)
      Takahasi, Y.
    • Organizer
      4th International Conference on Porphyrins and Phthalocyanines
    • Place of Presentation
      Rome, Italy
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary

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Published: 2006-04-01   Modified: 2016-04-21  

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