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Development of novel spin-labeled nucleic acids for detection of DNA internal dynamics

Research Project

Project/Area Number 18551052
Allocation TypeSingle-year Grants
Research InstitutionKyushu University

Principal Investigator

ASO Mariko  Kyushu University, Graduate School of Pharmceutical Sciences, Assistant Professor (30201891)

Co-Investigator(Kenkyū-buntansha) SUEMUNE Hiroshi  KYUSHU UNIVERSITY, Graduate School of Pharmceutical Sciences, Professor (20095897)
KATAYAMA Tsutomu  KYUSHU UNIVERSITY, Graduate School of Pharmceutical Sciences, Professor (70264059)
Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Keywordsspin-label / ESR / DNA / dynamics
Research Abstract

We synthesized oligodeoxynucleotides (ODN, 15-mer and 18-mer) containing 2-N-tert-butylaminoxyladenosine (1) and measured their ESR spectra in single-and double-strand forms. We calculated 2Azz values and h_+/h_0, values (h_+; height of the low field peak, h_0; height of the center peak) to evaluate mobility of ODNs. Upon formation of duplex, increase of 2Azz value and decrease of h_+/h_0 value were observed to indicate the mobility of ODN decreased. The 2Azz and h/h_0 values of single-stranded ODN at 25℃ were identical with those at 10 ℃. In contrast, the 2Azz and h_+/h_0 values of duplex at 25 and 10 ℃ changed. That indicated the mobility of duplex is more sensitive to temperature than single-stranded ODN.
ESR spectra of duplex between ODN containing 1 and complementary strands which contain A, C, G T at the opposite position to 1 indicated possibilities to report duplex stabilities.
ESR spectra of duplex between ODN containing 1 and complementary strands which contain mismatches indicated possibilities to report duplex stabilities.

Report

(1 results)
  • 2007 Final Research Report Summary
  • Research Products

    (4 results)

All 2008 2007

All Journal Article (2 results) Presentation (2 results)

  • [Journal Article] Studies on DNA dynamics using 2-N-tert-butylaminoxylpurines2007

    • Author(s)
      M.Aso, J.W.Mirc., M.Kurita, N.Koga, H.Suemune
    • Journal Title

      Nucleic Acids Symposium Series 51

      Pages: 163-164

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Studies on DNA dynamics using 2-N-tert-butyl aminoxylpurines2007

    • Author(s)
      M., Aso, J. W., Mire., M., Kurita, N., Koga, H., Suemune
    • Journal Title

      Nucleic Acids Symposium Series 51

      Pages: 163-164

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Synthesis and EPR Studies of 2-N-tert-Butylalninoxylpurine Contahling g Oligodeoxynucleotides2008

    • Author(s)
      麻生 真理子
    • Organizer
      Cordon Research Conference Bioorganic Chemistry
    • Place of Presentation
      アメリカ合衆国ニューハンプシャー
    • Year and Date
      2008-06-14
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Mariko, Aso Synthesis and EPR studies of 2-N tert-butyl-aminoxylpurine containing oligodeoxynucleotides2007

    • Author(s)
      Mariko, Aso
    • Organizer
      Gordon Research Conference Bioorganic Chemistry
    • Year and Date
      2007-06-14
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary

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Published: 2010-02-04   Modified: 2016-04-21  

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