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How different biological species make heme oxygenase suit their own needs?_Elucidation of the dependence of heme catabolism on species

Research Project

Project/Area Number 18570130
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Functional biochemistry
Research InstitutionYamaguchi University

Principal Investigator

MIGITA Taiko  Yamaguchi University, Faculty of Agriculture, Professor (90159161)

Co-Investigator(Kenkyū-buntansha) YOSHIDA Tadashi  Yamagata University, School of Medicine, Professor (10004673)
MIGITA Kouto  Yamaguchi University, Graduate School of Science and Engineering, Associate Professor (90116757)
SATO Michihiko  Yamagata University, School of Medicine, Associate Professor (00135344)
Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,620,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥420,000)
Fiscal Year 2007: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2006: ¥1,800,000 (Direct Cost: ¥1,800,000)
Keywordsheme oxygenase / enzymatic reaction mechanism / specificity of species / molecular recognition / protein / regulation of reactions
Research Abstract

1. Characterization of Soybean HO-1 (Gm HO1) and determination of the heme degradation mechanism. We obtained purified proteins of heme oxygenase-1 of plant-origin for the first time and clarified following matters :
(1)Stoichiometry of the heme binding, heme coordination numbers and ligand species, spin state of heme, characteristics of the ligand field of heme, pKa of the ligand water, have been determined. (2) The electron-donation system for the heme conversion to be NADPH/FNR/Fd, as well as ascorbate. Chemistry of heme conversion by Gm HO-1 is similar to that of known HOs but interaction of the distal residues with one of the intermediate, verdoheme, is unique. (3) The first detection of the ferric low-spin state of verdoheme-HO intermediate by EPR, during the reaction processes. (4) Estimation of contribution of the distal residues of Gm HO-1 to the heme degradation reaction by use of mutants made by site-specific mutagenesis. (1, 2 : reported on FEBS J, 2006 ; 3, submitted for BB … More RC, 2008 ; 4, in preparation for submission)
2. Elucidation of causes discriminating the heme degradation velocity under ascorbate between rat and cyanobacterial HO-ls.
Site-specific mutagenesis of ratHO-1 at the proximal helices yielded eight mutants. Structural and kinetic analyses in the presence of ascorbate were performed on the heme-mutant complexes. As a result, it has been evidenced that the whole molecular movement of the heme-distal helix connection coupled with modulation of the redox potential of heme and regulates the heme degradation rate (submitted to Biochemistry, 2008).
3. Searches on the electron transmission pathways in the heme-rat HO-1 complexes. Twenty aromatic amino-acid residues were mutated with leucine and kinetics of each heme complexes were examined in detail. On the other hand, binding of the HO complexes to the electron donor, CPR, was measured by the quenching of Ravine fluorescence from CPR. As a result, the inlet of electrons was identified (in preparation for submission). Less

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (36 results)

All 2008 2007 2006 Other

All Journal Article (3 results) (of which Peer Reviewed: 1 results) Presentation (33 results)

  • [Journal Article] Spectroscopic characterization of a higher plant heme oxygenase isoform-1 from Glycine max (soybean)-coordination structure of the heme complex and catabolism of heme2006

    • Author(s)
      Tomohiko Gohya
    • Journal Title

      The FEBS Journal 273

      Pages: 5384-5399

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Migita2006

    • Author(s)
      Tomohiko, Gohya, Xuhong, Zhang, Tadashi, Yoshida, Catharina, T
    • Journal Title

      the FEBS Journal 273

      Pages: 5384-5399

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Spectroscopic characterization of a higher plant herae oxygenase isoform-1 from Glycine max (soybean)-coordination structure of the heme complex and catabolism of heme2006

    • Author(s)
      Tomohiko Gohya
    • Journal Title

      The FEBS Journal 273・23

      Pages: 16-16

    • Related Report
      2006 Annual Research Report
  • [Presentation] Oxygen activation by heme-heme oxygenase in the presence of "weak" reducing partner, ascorbate2008

    • Author(s)
      右田たい子, 他
    • Organizer
      Global COE in Chemistry, Nagoya Special Sympo-sium: Dioxygen Activation by Metalloenzymes and Models
    • Place of Presentation
      名古屋大学(名古屋市)
    • Year and Date
      2008-03-20
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Oxygen activation by heme-heme oxygenase in the presence of"weak"reducing partner,ascorbate2008

    • Author(s)
      右田 たい子 他
    • Organizer
      Global COE in Chemistry, Nagoya Special Sympo-sium:Dioxygen Activation by Metalloenzymes and Models
    • Place of Presentation
      名古屋大学(名古屋市)
    • Year and Date
      2008-03-20
    • Related Report
      2007 Annual Research Report
  • [Presentation] Heme oxygenase catalytic mechanism studied by electron paramagnetic resonance2008

    • Author(s)
      右田たい子
    • Organizer
      Joint Symposium of "5^<th> Japan-China Crossover Science Symposium (JCCSS5)" and "Ibaraki University President Project-Establishment of the Quantum Biomolecular Sciences"
    • Place of Presentation
      茨城大学(水戸市)
    • Year and Date
      2008-02-28
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Heme oxygenase catalytic mechanism studied by electron paramagnetic resonance2008

    • Author(s)
      Migita, C. T
    • Organizer
      Joint Symposium of "5th Japan-China Crossover Science Symposium(JCCSS5)" and "Ibaraki University President Project-Establishment of the Quantum Biomolecular Sciences
    • Place of Presentation
      Mito City
    • Year and Date
      2008-02-28
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Heme oxygenase catalytic mechanism studied by electron paramagnetic resonance2008

    • Author(s)
      右田 たい子 他
    • Organizer
      Joint Symposium of"5^<th> Japan-China Crossover Science Symposium(JCCSS5)"and"lbaraki University President Project-Establishment of the Quantum Biomolecular Sciences"
    • Place of Presentation
      茨城大学(水戸市)
    • Year and Date
      2008-02-28
    • Related Report
      2007 Annual Research Report
  • [Presentation] Electron inlet(s) and transporting pathway(s) in rat heme oxygenase-1_Contribution of the specific aromatic residues2008

    • Author(s)
      Migita, C. Taiko, et. al.
    • Organizer
      Gordon Research Conference, Metals in Biology
    • Place of Presentation
      Ventura, CA (USA)
    • Year and Date
      2008-01-29
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Electron inlet (s) and transporting pathway (s) in rat heme oxygenase-l_Contribution of the specific aromatic residues2008

    • Author(s)
      Migita, C. T., et. al.
    • Organizer
      Gordon Research Conference, Metals in Biology
    • Place of Presentation
      Ventura, CA, USA
    • Year and Date
      2008-01-29
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Electron inlet(s)and transporting pathway(s)in rat heme oxygenase-1 Contribution of the specific aromatic residues2008

    • Author(s)
      右田 たい子 他
    • Organizer
      Gordon Research Conference, Metals in Biology
    • Place of Presentation
      Ventura,Cf(USA)
    • Year and Date
      2008-01-29
    • Related Report
      2007 Annual Research Report
  • [Presentation] 大豆ヘムオキシゲナーゼによるヘム遠位環境を調節する残基の探求2007

    • Author(s)
      右田たい子, 他
    • Organizer
      日本生物物理学会第45回年会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Year and Date
      2007-12-23
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Searches for the residues regulating heme distal environment in soybean heme oxygenase-12007

    • Author(s)
      Migita, C. T., et. al.
    • Organizer
      Forty-Fifth Annual Meeting of Biophysical Society of Japan
    • Place of Presentation
      Yokohama City
    • Year and Date
      2007-12-23
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 大豆ヘムオキシゲナーゼによるヘム遠位環境を調節する残基の探求2007

    • Author(s)
      右田 たい子 他
    • Organizer
      日本生物物理学会第35回年会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Year and Date
      2007-12-23
    • Related Report
      2007 Annual Research Report
  • [Presentation] Discrimination of electron donors and usage of different distal residues for the activity of heme oxygenase from different biological species2007

    • Author(s)
      右田たい子
    • Organizer
      第67回岡崎コンファレンス Molecular Science and Chemical Biology of Biomolecular Function
    • Place of Presentation
      分子科学研究所(岡崎市)
    • Year and Date
      2007-11-10
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Discrimination of electron donors and usage of different distalresidues for the activity of heme oxygenase from different biological species2007

    • Author(s)
      Migita, C. T
    • Organizer
      The 67th Okazaki Conference, Molecular Science and Chemical Biology of Biomolecular Function
    • Place of Presentation
      Okazaki City
    • Year and Date
      2007-11-10
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Discrimination of electron donors and usage of different distal residuesfor the activity of heme oxygenase from different biological species2007

    • Author(s)
      右田 たい子 他
    • Organizer
      第67回岡崎コンファレンスMolecular Science and Chemical Biology of Biomolecular Function
    • Place of Presentation
      分子科学研究所(岡崎市)
    • Year and Date
      2007-11-10
    • Related Report
      2007 Annual Research Report
  • [Presentation] EPR provides evidences to establish the chemistry of heme catabolism by heme oxygenase2007

    • Author(s)
      右田たい子, 他
    • Organizer
      A Joint Conference of the International Symposi-um on Electron Spin Resonance and the 46th Annual Meeting of the Society of Electron Spin Resonance and Technology (ISESS-SEST2007)
    • Place of Presentation
      静岡コンベンションセンター(静岡市)
    • Year and Date
      2007-11-07
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] EPR provides decisive evidences to establish the chemistry of heme catabolism by heme oxygenase2007

    • Author(s)
      Migita, C. T., et. al.
    • Organizer
      A Joint Conference of the International Symposium on Electron Spin Resonance and the 46th Annual Meeting of the Society of Electron Spin Science and Technology (ISESS-SEST 2007)
    • Place of Presentation
      Shizuoka City
    • Year and Date
      2007-11-07
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] EPR provides evidences to establish the chemistry of heme catabolismby heme oxygenase2007

    • Author(s)
      右田 たい子 他
    • Organizer
      A Joint Conference of the International Symposi-um on Electron Spin Resonance and the 46^<th> Annual Meeting of the Society of Electron Spin Reso-nance and Technology(ISESS-SEST2007)
    • Place of Presentation
      静岡コンベンションセンタ-(静岡市)
    • Year and Date
      2007-11-07
    • Related Report
      2007 Annual Research Report
  • [Presentation] How organisms of different classes make heme oxygenase suit their own needs: Selection of the electron donor2007

    • Author(s)
      右田たい子, 他
    • Organizer
      Heme oxygenase 2007
    • Place of Presentation
      Krakow (Poland)
    • Year and Date
      2007-09-05
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] How organisms of different classes make heme oxygenase suit their own needs? : Selection of the electron donor2007

    • Author(s)
      Migita, C. T., et. al.
    • Organizer
      Heme Oxygenases 2007, The 5th International Congress
    • Place of Presentation
      Krakow(Poland)
    • Year and Date
      2007-09-05
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] How organisms of different classes make heme oxygenase suit their own needs:Selection of the electron donor2007

    • Author(s)
      右田 たい子 他
    • Organizer
      Heme oxygenase 2007
    • Place of Presentation
      Krakow(Poland)
    • Year and Date
      2007-09-05
    • Related Report
      2007 Annual Research Report
  • [Presentation] HO-1のヘム分解における電子伝達経路2007

    • Author(s)
      右田たい子, 他
    • Organizer
      第34回生体分子科学討論会
    • Place of Presentation
      東北大学(仙台市)
    • Year and Date
      2007-06-22
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
  • [Presentation] Electron transporting path (s) in the heme conversion by HO-12007

    • Author(s)
      Migita, C. T., et. al.
    • Organizer
      The 34th Symposium on Biomolecules
    • Place of Presentation
      Sendai City
    • Year and Date
      2007-06-22
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 高等植物ヘムオキシゲナーゼ-1:ヘム複合体の特性とヘム分解特性2007

    • Author(s)
      右田たい子, 他
    • Organizer
      分子研研究会、ヘム代謝に関わる酵素の分子科学
    • Place of Presentation
      分子科学研究所(岡崎市)
    • Year and Date
      2007-03-19
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Higher-plant heme oxygenase isoform-1 : structural and catalytic characterization of the heme complex2007

    • Author(s)
      Migita, C. T., et. al.
    • Organizer
      Research Seminar of Institute for Molecular Sciences : Molecular science of The enzymes on heme metabolism
    • Place of Presentation
      Okazaki City
    • Year and Date
      2007-03-19
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Higher-plant heme oxygenase-1 from soybean2007

    • Author(s)
      Migita, C. Taiko
    • Organizer
      Gordon Research Conference, Metals in Biology
    • Place of Presentation
      Ventura, CA (USA)
    • Year and Date
      2007-01-29
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Heine conversion by soybean heme oxygenase-1, Gm HO-12007

    • Author(s)
      Migita, C. T., et. al.
    • Organizer
      Gordon Research Conference, Metals in Biology
    • Place of Presentation
      Ventura, CA, USA
    • Year and Date
      2007-01-29
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Characterization of the heme complex of a higher plant heme oxygenase-12006

    • Author(s)
      右田たい子, 他
    • Organizer
      第5回東アジア生物物理シンポジウム日本生物物理学会第44回年会合同大会(EABS&BSJ2006)
    • Place of Presentation
      沖縄コンベンションセンター(沖縄県宜野湾市)
    • Year and Date
      2006-11-13
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Effect of the aromatic amino-acid mutation on the heme catabolism of rat heme oxygenase-12006

    • Author(s)
      右田たい子, 他
    • Organizer
      第5回東アジア生物物理シンポジウム日本生物物理学会第44回年会合同大会(EABS&BSJ2006)
    • Place of Presentation
      沖縄コンベンションセンター(沖縄県宜野湾市)
    • Year and Date
      2006-11-13
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] EPA. characterization of the heme complex of a higher plant heme oxygenase-12006

    • Author(s)
      Migita, C. T., et. al.
    • Organizer
      Fifth East Asian Biophysics Symposium & Forty-Fourth Annual Meeting of Biophysical Society of Japan
    • Place of Presentation
      Ginowan City
    • Year and Date
      2006-11-13
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Effect of the aromatic amino-acid mutation on aromatic amino-acid mutation on the heme catabolism of rat heme oxygenase-12006

    • Author(s)
      Migita, C. T., et. al.
    • Organizer
      Fifth East Asian Biophysics Symposium & Forty-Fourth Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Ginowan City
    • Year and Date
      2006-11-13
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] ラットHO-1の近位ヘリックス残基の変異によるアスコルビン酸共役ヘム分解速度の制御2006

    • Author(s)
      右田たい子, 他
    • Organizer
      第33回生体分子科学討論会
    • Place of Presentation
      名古屋工業大学(名古屋市)
    • Year and Date
      2006-07-14
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Regulation of the heme degradation rate by heme degradation rate by rat heme oxygenase-1 by the mutation on the proximal helices2006

    • Author(s)
      Migita, C. T., et. al.
    • Organizer
      The 33rd Symposium on Biomolecules
    • Place of Presentation
      Nagoya City
    • Year and Date
      2006-07-14
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Oxygen activation by heme-heme oxygenase in the presence of "weak" reducing partner, ascorbate

    • Author(s)
      Migita, C. T., et. al.
    • Organizer
      Global COE in Chemistry, Nagoya Special Symposium : Dioxygen Activation by Metalloenzymes and Models
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary

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Published: 2006-04-01   Modified: 2016-04-21  

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