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Genetic studies on the interaction between base excision repair and recombinational repair using human gene knockout cells

Research Project

Project/Area Number 18570163
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionYokohama City University

Principal Investigator

KOYAMA Hideki  Yokohama City University, International Graduate School of Arts and Sciences, Professor (40085626)

Co-Investigator(Kenkyū-buntansha) ADACHI Noritaka  Yokohama City University, International Graduate School of Arts and Sciences, Associate Professor (30264675)
Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,960,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥360,000)
Fiscal Year 2007: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2006: ¥2,400,000 (Direct Cost: ¥2,400,000)
Keywordsgenetics / gene / cancer / genome / repair / ヒト細胞 / 遺伝子破壊株 / 塩基除去修復 / 組換え修復 / 遺伝子相互作用 / ゲノム不安定性
Research Abstract

In this study, we have performed genetic analysis on the interaction between base excision repair and recombinational repair in human cells. Specifically, we disrupted, by means of gene targeting using Nalm-6 cells, the PolB, Rad54, and Lig4 genes involved in base excision repair homologous recombination, or nonhomologous end-joining, respectively. Additionally, we tried to make double-knockout mutant cell lines for those genes. We investigated the growth rate, cell cycle distributions, and recombination capacity of these mutants. Furthermore, using these mutants, we have successfully analyzed cellular sensitivity to a variety of genotoxic agents such as X-rays, UV light, alkylating agents, hydrogen peroxide, topoisomerase inhibitors, and replication stress. These studies led us to conclude that homologous recombination is important for repairing DNA double-strand breaks that arose from single-strand breaks. Most importantly, this work has highlighted the genetic interaction between DNApolymerase beta and DNAligase W in human cells.

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (47 results)

All 2008 2007 2006 Other

All Journal Article (24 results) (of which Peer Reviewed: 9 results) Presentation (23 results)

  • [Journal Article] The requirement of Artemis in doubles-trand break repair depends on the type of DNA damage2008

    • Author(s)
      Kurosawa, A., et. al.
    • Journal Title

      DNA Cell Biol. 27

      Pages: 55-61

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] The requirement of Artemis in double-strand break repair depends on the type of DNA damage2008

    • Author(s)
      Kurosawa, A., et. al.
    • Journal Title

      DNA Cell Biol 27

      Pages: 55-61

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] The requirement of Artemis in double-strand break repair depends on the type of DNA damage.2008

    • Author(s)
      Kurosawa, A., et. al.
    • Journal Title

      DNA Cell Biol. 27

      Pages: 55-61

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Human Mus81 and FANCB independently contribute to repair of DNA damage during replication2007

    • Author(s)
      Nomura, Y., et. al.
    • Journal Title

      Genes Cells 12

      Pages: 1111-1122

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Absence of p53 enhances growth defects and etoposide sensitivity of human cells lacking the Bloom syndrome helicase BLM2007

    • Author(s)
      So, S., et. al.
    • Journal Title

      DNA Cell Biol. 26

      Pages: 517-525

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Decreased PARP-1 levels accelerate embryonic lethality but attenuate neuronal apoptosis in DNA polymerase β-deficient mice2007

    • Author(s)
      Sugo, N., et. al.
    • Journal Title

      Biochem. Biophys. Res. Commun. 354

      Pages: 656-661

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Absence of p53 enhances growth defects and etoposide sensitivity of human cells lacking the Bloom syndrome helicase BLM.2007

    • Author(s)
      So, S., et. al.
    • Journal Title

      DNA Cell Biol 26

      Pages: 517-525

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Absence of p53 enhances growth defects and etoposide sensitivity of human cells lacking the Bloom syndrome helicase BLM.2007

    • Author(s)
      So, S., et. al.
    • Journal Title

      DNA Cell Biol. 26

      Pages: 517-525

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Human Mus81 and FANCB independently contribute to repair of DNA damage during replication.2007

    • Author(s)
      Nomura, Y., et. al.
    • Journal Title

      Genes Cells 12

      Pages: 1111-1122

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Decreased PARP-1 levels accelerate lethality but attenuate neuronal apoptosis in DNA polymerase beta-deficient mice.2007

    • Author(s)
      Sugo, N
    • Journal Title

      Biochem. Biophys. Res. Commun. 354

      Pages: 656-661

    • Related Report
      2006 Annual Research Report
  • [Journal Article] 53BP1 contributes to survival of cells irradiated with X-ray during G1 without Ku70 or Artemis2006

    • Author(s)
      Iwabuchi, K., et. al.
    • Journal Title

      Genes Cells 11

      Pages: 935-948

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Parp-1 protects homologous recombination from interference by Ku and Ligase IV in vertebrate cells2006

    • Author(s)
      Hochegger, H., et. al.
    • Journal Title

      EMBO J. 25

      Pages: 1304-1314

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Contribution of the myeloperoxidase-dependent oxidative system to host defence aginst Cryptococcus neofrmans2006

    • Author(s)
      Aratani, Y.
    • Journal Title

      J. Med. Microbiol. 55

      Pages: 1291-1299

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Simple, one-week method to construct gene targeting vectors : application to production of human knockout cell lines.2006

    • Author(s)
      Iiizumi, S.
    • Journal Title

      BioTechniques. 41

      Pages: 311-316

    • Related Report
      2006 Annual Research Report
  • [Journal Article] 53BP1 meadiates an alternative DNA double-strand break repair pathway that functions preferentially in G1.2006

    • Author(s)
      Iwabuchi, K.
    • Journal Title

      Genes to Cells 11

      Pages: 935-948

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Earlier onset of neutrophil-mediated inflammation in the ultraviolet-exposed skin of mice deficient in myeloperoxidase and NADPH oxidase.2006

    • Author(s)
      Komatsu, J.
    • Journal Title

      Inflamm. Res. 55

      Pages: 200-206

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Parp-1 protects homologous recombination from intereference by Ku and ligase IV in vertebrate cells.2006

    • Author(s)
      Hochegger, H.
    • Journal Title

      EMBO J. 25

      Pages: 1305-1314

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Enhanced gene targerting efficiency in siRNA that silences the expression of the Bloom syndrome gene in human cells.2006

    • Author(s)
      So, S.
    • Journal Title

      Genes to Cells 11

      Pages: 363-371

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Decreased mutant frequency in embryonic brain of DNA polymerase polymerase beta-null mice.2006

    • Author(s)
      Niimi, N.
    • Journal Title

      Mutagenesis 21

      Pages: 55-59

    • Related Report
      2006 Annual Research Report
  • [Journal Article] The human pre-B cell line Nalm-6 in highly proficient in gene targeting by homologous recombination.2006

    • Author(s)
      Adachi, N.
    • Journal Title

      DNA Cell Biol. 25

      Pages: 19-24

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Heterozygous disruption of the human KU70 gene does not affect cell growth, DNA double-strand break repair, or genome integrity.2006

    • Author(s)
      Uegaki, K.
    • Journal Title

      Nucleic Acids Res. 5

      Pages: 303-311

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Decreased PARP-1 levels accelerate embryonic lethality but attenuate neuronal apoptosis in DNA polymerase 8 -deficient mice

    • Author(s)
      Sugo, N., et. al.
    • Journal Title

      Biochem. Biophys. Res. Commun 354

      Pages: 656-661

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] A new system for analyzing LINE retrotransposition in the chiken DT40 cell line widly used for reverse genetics.

    • Author(s)
      Honda, H.
    • Journal Title

      Gene (In press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Absence of p53 enhances growth defects and etoposide sensitivity of human cells lacking the Bloom syndrome helicase BLM.

    • Author(s)
      So, S.
    • Journal Title

      DNA Cell Biol. (In press)

    • Related Report
      2006 Annual Research Report
  • [Presentation] Genetic studies on the repair of topoisomerase-mediated DNA damage using human gene knockout cell lines2007

    • Author(s)
      Kurosawa, A., et. al.
    • Organizer
      EMBO Workshop 2007 DNA Supercoiling & Topoi somerases
    • Place of Presentation
      Frejus, France
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] NK314 is a topoisomerase II a specific inhibitor inducing stable cleavage complex and rapid DNA double-strand breaks2007

    • Author(s)
      Toyoda, E., et. al.
    • Organizer
      2007 AACR Annual Meeting
    • Place of Presentation
      LosAngeles, CA, USA
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Impact of DSB repair deficiency in human cells:NHEJ negatively affects cell survival in the presence of rephcation-associated DNA damage2007

    • Author(s)
      Kurosawa, A, et. al.
    • Organizer
      BMB2007
    • Place of Presentation
      Yokohama
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Human Mus81 and FANCB independently contribute to repair of DNA damage during replication2007

    • Author(s)
      Nomura, Y., et. al.
    • Organizer
      BMB2007
    • Place of Presentation
      Yokohama
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] NK314 is a topoisomerase IIalpha specfic in hibitor forming stable DNA cleavage complex2007

    • Author(s)
      Toyoda, E., et. al.
    • Organizer
      The 66th Annual Meeting of the Japanese Cancer Association(JCA2007)
    • Place of Presentation
      Yokohama
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Genetic studies on the repair of topoisomerase-mediated DNA damage using human gene knockout cell lines2007

    • Author(s)
      Kurosawa, A., et. al.
    • Organizer
      The 66th Annual Meeting of the Japanese Cancer Association(JCA2007)
    • Place of Presentation
      Yokohama
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Gene knockout studies on DNA strand break repair in human cells2007

    • Author(s)
      Adachi, N., et. al.
    • Organizer
      日本薬学会第127年会
    • Place of Presentation
      富山
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Genetic studies on the repair of topoisomerase-mediated DNA damage using human gene knockout cell lines2007

    • Author(s)
      Kurosawa, A., et. al.
    • Organizer
      EMBO Workshop 2007 DNA Supercoiling & Topoisomerases
    • Place of Presentation
      Frejus (France)
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] NK314 is a topoisomerase Ha specific inhibitor inducing stable cleavage complex and rapid DNA double-strand breaks2007

    • Author(s)
      Toyoda, E., et. al.
    • Organizer
      2007 AACR Annual Meeting
    • Place of Presentation
      Los Angeles (USA
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Impact of DSB repair deficiency in human cells: NHEJ negatively affects cell survival in the presence of replication-associated DNA damage2007

    • Author(s)
      Kurosawa, A., et. al.
    • Organizer
      BMB2007
    • Place of Presentation
      Yokohama
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] NK314 is a topoisomerase IIalpha specific inhibitor forming stable DNA cleavage complex2007

    • Author(s)
      Toyoda, E., et. al.
    • Organizer
      JCA2007
    • Place of Presentation
      Yokohama
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Genetic studies on the repair of topoisomerase-mediated DNA damage using human gene knockout cell lines2007

    • Author(s)
      Kurosawa, A., et. al.
    • Organizer
      JCA2007
    • Place of Presentation
      Yokohama
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Gene knockout studies on DNA strand break repair in human cells2007

    • Author(s)
      Adachi, N., et. al.
    • Organizer
      127th Annual Meeting of the Pharmaceutical Society of Japan
    • Place of Presentation
      Toyama
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Impact of DSB repair deficiency on damage sensitivity:NHEJ negatively affects cell survival in the presence of DNA lesions that rely on homologous DNA repair2006

    • Author(s)
      Adachi, N., et. al.
    • Organizer
      The Salk/Caltech conference on DNA Replication and Genome Inteerity
    • Place of Presentation
      La Jolla, CA, USA
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Gene knockout studies on DNA double-strand break repair in human cells2006

    • Author(s)
      Adachi, N., et. al.
    • Organizer
      第65回日本癌学会学術総会
    • Place of Presentation
      横浜
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Nonhomologous end-joining negatively affects cell survival in the resence of DNA lesions that rely on homoloous DNA repair2006

    • Author(s)
      Adachi, N., et. al.
    • Organizer
      20th IUBMB Int'l Congress of Biochemistry and Molecular Biology and 11th FAOBMB Congress
    • Place of Presentation
      Kyoto
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Impact of DNA ligase IV deficiency on random and targeted integration2006

    • Author(s)
      Iiizumi, S., et. al.
    • Organizer
      20th IUBMB Int'l Congress of Biochemistry and Molecular Biology and 11th EAOBMB Congress
    • Place of Presentation
      Kyoto
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Genetic analysis of human Artemis2006

    • Author(s)
      Kurosawa, A, et. al.
    • Organizer
      2006年分子生物学フォーラム
    • Place of Presentation
      名古屋
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Impact of DSB repair deficiency on damage sensitivity: NHEJ negatively affects cell survival in the presence of DNA lesions that rely on homologous DNA repair2006

    • Author(s)
      Adachi, N., et. al.
    • Organizer
      The Salk/Caltech conference on DNA. Replication and Genome Integrity
    • Place of Presentation
      La Jolla (USA)
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Gene knockout studies on DNA double-strand break repair in human cells2006

    • Author(s)
      Adachi, N., et. al.
    • Organizer
      JCA2006
    • Place of Presentation
      Yokohama
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Nonhomologous end-joining negatively affects cell survival in the presence of DNA lesions that rely on homologous DNA repair2006

    • Author(s)
      Adachi, N., et. al.
    • Organizer
      20th IUBMB Int'l and llth FAOBMB Congress
    • Place of Presentation
      Kyoto
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Impact of DNA ligase IV deficiency on random and targeted integration2006

    • Author(s)
      Iiizumi, S., et. al.
    • Organizer
      20th IUBMB Int'l and llth FAOBMB Congress
    • Place of Presentation
      Kyoto
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Genetic analysis of human Artemis2006

    • Author(s)
      Kurosawa, A., et. al.
    • Organizer
      2006 Mol. Biol. Forum
    • Place of Presentation
      Nagoya
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary

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Published: 2006-04-01   Modified: 2016-04-21  

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