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A Novel Regulatory Mechanism for Initiation of Mitochondrial DNA Replication

Research Project

Project/Area Number 18570168
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

FENG Ling  The Institute of Physical and Chemical Research, Chemical Genetics Laboratory, Senior Research Scientist (70281665)

Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥4,020,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥420,000)
Fiscal Year 2007: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2006: ¥2,200,000 (Direct Cost: ¥2,200,000)
KeywordsDNA double-strand break / Saccharomyces cerevisiae / Homologous DNA recombination / Rolling circle DNA replication / Concatemer / Homoplasmv / Heteroplasmv / DNA repair
Research Abstract

Mitochondrial DNA (mtDNA) genomic copy number largely varies under different physiological conditions, but the mechanism underlying regulation of mtDNA copy number still remains unknown. Our previous results revealed that in the yeast Saccharomyces wrevisiae, mtDNA replication mainly depends on a recombination-mediated rolling circle type replication, and the initiation is dependent on a double-stranded break in a replication origin (on5).
This year we analyzed the function of the novel protein, Imrl, the ove-expression of which suppresses replication advantage of hypersuppressive [rho^-] mtDNA over normal[rho^+] mtDNA, and the level of the double-stranded break at the ori5site. To identify the localization of Imr1, Western blot analysis was performed by using antibody against Imrl to detect the signals of Imr1 in mitochondria isolated from Imrl-overproducing cells and empty vector harboring cells. We found that the signals of Imrl only increased in mitochondria derived from the cells with overproduced Imrl, indicating Imrl is localized in mitochondria.
To examine the effect of over-expression of IMR1 gene on the replication of mtDNA, Southern blot analysis was performed to quantitatively measure the mtDNA copy number We found that the copy number of hypersuppressive[rho^-] mtDNA decreased to one-fifth of that in the cells without overproduced Imrl. We further found that the amounts of the major molecular species of hypersuppressive [rhol^-] mtDNA, including concatemers that are formed through rolling circle type replication and circular multimers that are formed by homologous recombination remarkably decreased in the Imrl-overproducing cells.
These results suggest that Imrl plays a role in the regulation of the recombination-mediated rolling circle type replication by directly suppressing the formation of the double stranded break in ori5 in yeast mitochondria.

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (26 results)

All 2008 2007

All Journal Article (13 results) (of which Peer Reviewed: 6 results) Presentation (13 results)

  • [Journal Article] A novel cis-acting element required for DNA damage-inducible expression of yeast DIN72008

    • Author(s)
      Ayako Yoshitani
    • Journal Title

      Biochemical and Biophysical Research Communication 365

      Pages: 183-188

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] A novel cis-acting element required for DNA damage-inducilble experession of yeast DIN72008

    • Author(s)
      Ayako Yoshitani, Minoru Yoshida, Feng Ling
    • Journal Title

      Biochemical and Biophysical Research Communication 365

      Pages: 183-188

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] A novel cis-acting element required for DNA damage-inducible expression of yeast DIN72008

    • Author(s)
      Ayako Yoshitani, Minoru Yoshida, and Feng Ling,
    • Journal Title

      Bioehemical and Biophysical Research Communication 365

      Pages: 183-188

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DNA recombination-Initiation plays a role in the extremely biased inheritance of yeast [rho^-] mitochondrial DNA that contains the replication origin ori52007

    • Author(s)
      Feng Ling
    • Journal Title

      Molecular and Cellular Biology 27

      Pages: 1133-1145

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] DNA recombination protein-dependent mechanism of homoplasmy and its proposed functions2007

    • Author(s)
      Takehiko Shibata
    • Journal Title

      Mitochondrion 7

      Pages: 17-23

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] ローリングサークル型DNA複製:ミトコンドリアDNAコピー数制御機構の新しい普遍的モデル2007

    • Author(s)
      凌 楓
    • Journal Title

      蛋白質核酸酵素 52

      Pages: 886-892

    • NAID

      40015530565

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] DNA recombination-Initiation plays a role in the extremely biased inheritance of yeast[rho] mitochondrial DNA that contains the replication origin ori52007

    • Author(s)
      Feng Ling, Akiko Hore, Takehiko Shibata
    • Journal Title

      Molecular and Cellular Biology 27

      Pages: 1133-1145

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] DNA recombination protein-dependent mechanism of homoplasmy and its proposed functions2007

    • Author(s)
      Takehiko Shibata, Feng Ling
    • Journal Title

      Mitochondrion 7

      Pages: 17-23

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] a universal model for controlling mechanisms of mitochondrial DNA copy number2007

    • Author(s)
      Feng Ling, Akiko Hori, Minoru Yoshida, Takehiko Shibata Rolling circle replication
    • Journal Title

      Tanpakushitsu Kakusan Koso 52(8)

      Pages: 886-92

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] DNA recombination-Initiation plays a role in the extremely biased inheritance of yeast [rho] mitochondrial DNA that contains the replication origin ori52007

    • Author(s)
      Feng Ling, Akiko Hori, and Takehiko Shibata
    • Journal Title

      Moleeular and cellular biology 27

      Pages: 1133-1145

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DNA recombination protein-dependent mechanism of homoplasmy and its proposed functions2007

    • Author(s)
      Takehiko Shibata and Feng Ling,
    • Journal Title

      Mitochondrion 7

      Pages: 17-23

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ローリングサークル型DNA複製:ミトコンドリアDNAコピー数制御機構の新しい普遍的モデル2007

    • Author(s)
      凌 楓、堀 晶子、吉田 稔、柴田 武彦
    • Journal Title

      蛋白質核酸酵素 52

      Pages: 886-892

    • NAID

      40015530565

    • Related Report
      2007 Annual Research Report
  • [Journal Article] DNA Recombination-Initiation Plays a Role in the Extremely Biased Inheritance of Yeast[rho-]Mitochondrial DNA That Contains the Replication Origin ori52007

    • Author(s)
      Feng Ling, Akiko Hori, and Takehiko Shibata
    • Journal Title

      MOLECULAR AND CELLULAR BIOLOGY 27

      Pages: 1133-1145

    • Related Report
      2006 Annual Research Report
  • [Presentation] 単離ミトコンドリア解析で明されたROSによるmtDNAコピー数制御機構2007

    • Author(s)
      堀 晶子、凌 楓、柴田武彦、吉田 稔
    • Organizer
      ミトコンドリア学会第7回年会
    • Place of Presentation
      南日本新聞社南ホール鹿児島
    • Year and Date
      2007-12-20
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] The promoting mechanism of mtDNA copy number in hydrogen peroxide-treated isolated mitochondria2007

    • Author(s)
      Akiko Hori, Feng Ling, Takehiko Shibata, Minoru Yoshida
    • Organizer
      The 7th Annual Conference of the Japanese Society of Mitochondrial Research and Medicine(J-mit)
    • Place of Presentation
      Kagoshima, Japan
    • Year and Date
      2007-12-20
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] ミトコンドリアゲノムの遺伝的均一化におけるDNA損傷応答因子Din7の役割2007

    • Author(s)
      堀 晶子、凌 楓、柴田 武彦、吉田 稔
    • Organizer
      ミトコンドリア学会第7回年会
    • Place of Presentation
      南日本新聞社南ホール鹿児島
    • Year and Date
      2007-12-20
    • Related Report
      2007 Annual Research Report
  • [Presentation] ミトコンドリアのエキソヌクレアーゼによる不安定化からゲノムを守る出芽酵母の相同DNA対合酵素Mhr12007

    • Author(s)
      凌 楓、柴田武彦、堀 晶子、吉田 稔
    • Organizer
      第30回日本分子生物学会年会第80回日本生化学会年会合同大会
    • Place of Presentation
      パシフィコ横浜ヨコハマグランドインターコンチネンタルホテル
    • Year and Date
      2007-12-14
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
  • [Presentation] A homologous DNA pairing-promoting Mhrlp functions to prevent mtDNA instability caused by overproducing Din7p, an exo-Dnase in yeast2007

    • Author(s)
      Feng Ling, Takehiko Shibata, Akiko Hori, Minoru Yoshida
    • Organizer
      Biochemistry and Molecular Biology, Yokohama(Pacifico Yakohama, InterContinental Yokohama Grand)
    • Place of Presentation
      Japan
    • Year and Date
      2007-12-14
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 活性酸素種によるmtDNAコピー数増加とその可能なメカニズム2007

    • Author(s)
      堀 晶子、凌 楓、柴田武彦、吉田 稔
    • Organizer
      第30回日本分子生物学会年会第80回日本生化学会年会合同大会
    • Place of Presentation
      パシフィコ横浜ヨコハマグランドインターコンチネンタルホテル
    • Year and Date
      2007-12-13
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] An accelerated increases of mtDNA copy number by reactive oxygen species and its possible mechanism2007

    • Author(s)
      Akiko Hori, Feng Ling, Takehiko Shibata, Minoru Yoshida
    • Organizer
      Biochemistry and Molecular Biology, Yokohama(Pacifico Yakohama, InterContinental Yokohama Grand)
    • Place of Presentation
      Japan
    • Year and Date
      2007-12-13
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 活性酸素種に夜mtDNAコピー数増加とその可能なメカニズム2007

    • Author(s)
      堀 晶子、凌 楓、柴田 武彦、吉田 稔
    • Organizer
      第30回日本分子生物学会年会第80回日本生化学会年会合同大会
    • Place of Presentation
      パシフィコ横浜ヨコハマグランドインターコンチネンタルホテル
    • Year and Date
      2007-12-04
    • Related Report
      2007 Annual Research Report
  • [Presentation] ミトコンドリアゲノムの遺伝的均一化におけるDNA損傷応答因子Din7の役割2007

    • Author(s)
      凌 楓、柴田武彦、堀 晶子、吉田稔
    • Organizer
      バイオアーキテクトシンポジウム
    • Place of Presentation
      独立行政法人理化学研究所和光研究所鈴木梅太郎記念ホール
    • Year and Date
      2007-09-11
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
  • [Presentation] A role of DNA damage-responding protein, Din7 in the establishment of mitochondrial homoplasmy2007

    • Author(s)
      Feng Ling, Takehiko Shibata, Akiko Hori, Minoru Yoshida
    • Organizer
      Bioarchitect symposium RIKEN(Umetaro Memorial Hall)
    • Place of Presentation
      Japan
    • Year and Date
      2007-09-11
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] A role of DNA damage-inducible protein, Din7 in recombination-mediated mitochondrial DNA replication2007

    • Author(s)
      Feng Ling, Akiko Hori, Minoru Yoshida and Takehiko Shibata
    • Organizer
      FASEB Summer Research Conference on Genetic Recombination & Genome Rearrangements
    • Place of Presentation
      Snowmass Village, Colorado, USA
    • Year and Date
      2007-07-29
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] A role of DNA damage-inducible protein, Din7 in recombination・mediated mitochondrial DNA replication2007

    • Author(s)
      Feng Ling, Akiko Hori, Minoru Yoshida, Takehiko Shibata
    • Organizer
      FASEB Summer Research Conference on Genetic Recombination&Genome Rearrangements
    • Place of Presentation
      Snowmas Village, Colorado, USA
    • Year and Date
      2007-07-29
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] A role of DNA damage-inducible protein,Din7 in recombination-mediated mitochondrial DNA replication2007

    • Author(s)
      Feng Ling, Akiko Hori, Minoru Yoshida and Takehiko Shibata
    • Organizer
      FASEB Summer Research Conference on Genetic Recombination & Genome Rearrangements
    • Place of Presentation
      Snowmass Village,Colorado,USA
    • Year and Date
      2007-07-29
    • Related Report
      2007 Annual Research Report

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Published: 2006-04-01   Modified: 2016-04-21  

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