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Functions of B1 SOX proteins in zebrafish embryonic development

Research Project

Project/Area Number 18570197
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Developmental biology
Research InstitutionOsaka University

Principal Investigator

YUSUKE Kamachi  Osaka University, Graduate School of Frontier Biosciences, Associate Professor (90263334)

Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥4,080,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2007: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2006: ¥2,000,000 (Direct Cost: ¥2,000,000)
KeywordsZebrafish / SOX / Knockdown / Embryonic development / 遺伝子 / 発生・分化
Research Abstract

Group B1 Sox genes, encoding functionally analogous transcription factors, are thought to play important roles in multiple developmental processes. Among the six group B1 sox genes in zebrafish, sox2, sox3, sox19a and sox19b are initially expressed ubiquitously in the blastoderm. Their expression then becomes confined to the future ectoderm and finally to the future neuroectoderm.
To investigate the functions of the group B1 sox genes during early development, we knocked down sox2, sox3, sox19a and soxl9b in zebrafish embryos individually or in various combinations. Single to triple knockdowns caused little to moderate morphological abnormalities, whereas quadruple knockdown embryos showed remarkably severe defects. These quadruple morphants showed partially dorsalized characteristics, as exemplified by the expansion of neural marker gene expression. Consistently, expression of bmp2b and bmp7 was reduced, suggesting the BMP-dependent dorsoventral patterning is impaired in the morphant. Additionally, the prechordal plate was posteriorly located and the notochord was shorter and wider. wnt11 and wnt5b were found to be decreased, which can account for the impairment of convergence and extension. Furthermore, although early neuroectoderm marker genes such as otx2 and zic2b were present, many genes involved in later processes of neural development, such as hesx1, krox20 and neurog1, were not, suggesting the group B1 sox genes are essential for neural cell fate determination.

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (26 results)

All 2008 2007 2006

All Journal Article (12 results) (of which Peer Reviewed: 5 results) Presentation (14 results)

  • [Journal Article] Quantitative assessment of the knockdown efficiency of morpholino antisense oligonucleotides in zebrafish embryos using a luciferase assay2008

    • Author(s)
      Kamachi, Y., et. al.
    • Journal Title

      Genesis 46

      Pages: 1-7

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Quantitative assessment of the knockdown efficiency of morpholino antisense oligonucleotides in zebrafish embryos using a luciferase assay2008

    • Author(s)
      Kamachi, Y., Okuda, Y., Kondoh, H
    • Journal Title

      Genesis 46

      Pages: 1-7

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] PAX6 and SOX2-dependent regulation of the Sox2 enhancer N-3 involved in embryonic visual system development2007

    • Author(s)
      Inoue, M., et. al.
    • Journal Title

      Genes to Cells 12

      Pages: 1049-1061

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Hypogonadotropic hypogonadism in an adult female with a heterozygous hypomorphic mutation of SOX2.2007

    • Author(s)
      Sato, N., et. al.
    • Journal Title

      European Journal of Endocrinology 156

      Pages: 167-171

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Triggering neural differentiation of ES cells by subtype switching of importin-α2007

    • Author(s)
      Yasuhara, N., et. al.
    • Journal Title

      Nature Cell Biology 9

      Pages: 72-79

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] PAX6 and SOX2-dependent regulation of the Sox2 enhancer N-3 involved in embryonic visual system development2007

    • Author(s)
      Inoue, M., Kamachi. Y., Matsunami, H., Imada, K., Uchikawa, M., Kondoh, H
    • Journal Title

      Genes Cells 12

      Pages: 1049-61

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Hypogonadotropic hypogonadism in an adult female with a heterozygous hypomorphic mutation of SOX22007

    • Author(s)
      Sato, N., Kamachi, Y., Kondoh, H., Shima, Y., Morohashi, K., Horikawa, R., Ogata, T
    • Journal Title

      Eur J Endocrinol 156

      Pages: 167-71

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Triggering neural differentiation of ES cells by subtype switching of importin-alpha2007

    • Author(s)
      Yasuhara, N., Shibazaki, N., Tanaka, S., Nagai, M., Kamikawa, Y., Oe, S., Asally, M., Kamachi. Y., Kondoh, H., Yoneda, Y
    • Journal Title

      Nat Cell Biol 9

      Pages: 72-9

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] PAX6 and SOX2-dependent regulation of the Sox2 enhancer N-3 involved in embryonic visual system development2007

    • Author(s)
      Inoue, M., et. al.
    • Journal Title

      Genes Cells 12

      Pages: 1049-1061

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hypogonadotropic hypogonadism in an adult female with a heterozygous hypomorphic mutation of SOX2.2007

    • Author(s)
      Sato, N. et al.
    • Journal Title

      European Journal of Endocrinology 156

      Pages: 167-171

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Comparative genomic and expression analysis of group B1 sox genes in zebrafish indicates their diversification during vertebrate evolution.2006

    • Author(s)
      Okuda, Y. et al.
    • Journal Title

      Developmental Dynamics 235

      Pages: 811-825

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Convergence of Wnt and FGF signals in the genesis of posterior neural plate through activation of the Sox2 enhancer N-1.2006

    • Author(s)
      Takemoto T. et al.
    • Journal Title

      Development 133

      Pages: 297-306

    • Related Report
      2006 Annual Research Report
  • [Presentation] ゼブラフィッシュにおけるノックダウン解析から明らかになったグループB1 SOX転写因子の初期胚発生における機能2007

    • Author(s)
      蒲池雄介
    • Organizer
      日本発生生物学会秋季シンポジウム
    • Place of Presentation
      岡崎
    • Year and Date
      2007-11-05
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Essential functions of group 1 : 31 sox genes in early zebrafish development revealed by MO knockdown2007

    • Author(s)
      Kamachi, Y
    • Organizer
      Annual Autumn Symposium for the Japanese Society of Developmental Biologists
    • Place of Presentation
      Okazaki
    • Year and Date
      2007-11-05
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] ゼブラフィッシュにおけるノックダウン解析から明らかになったグループB1 SOX転写因子の初期胚発生における機能2007

    • Author(s)
      蒲池雄介
    • Organizer
      日本発生生物学会秋季シンポジウム
    • Place of Presentation
      愛知県岡崎市
    • Year and Date
      2007-11-05
    • Related Report
      2007 Annual Research Report
  • [Presentation] ゼブラフィッシュzfhx1遺伝子ファミリーの同定と胚発生過程における発現パターンの解析2007

    • Author(s)
      Priller, F., et. al.
    • Organizer
      日本発生生物学会、第40回大会
    • Place of Presentation
      福岡
    • Year and Date
      2007-05-29
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Expression patterns of zebrafish zihx1 family genes during embryonic development2007

    • Author(s)
      Priller, F., Okuda, Y., Kondoh, H., Kamachi. Y., Higashi, Y
    • Organizer
      40th Annual Meeting for the Japanese Society of Developmental Biologists
    • Place of Presentation
      Fukuoka
    • Year and Date
      2007-05-29
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Enhancer trap in zebrafish using improved GAL4 fusion activators2006

    • Author(s)
      Ogura, E., et. al.
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology and 11th FAOBMB Congress
    • Place of Presentation
      京都
    • Year and Date
      2006-06-23
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Multiple knockdown of zebrafish group B1 sox genes revealing their redundant functions and expression profiles2006

    • Author(s)
      Okuda, Y., et. al.
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology and 11th FAOBMB Congress
    • Place of Presentation
      京都
    • Year and Date
      2006-06-23
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Shared mechanisms in transcriptional regulation of retina and lens development involving cooperation of SOX2 and Pax62006

    • Author(s)
      Inoue, M., et. al.
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology and 11th FAOBMB Congress
    • Place of Presentation
      京都
    • Year and Date
      2006-06-23
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Enhancer trap in zebrafish using improved GAL4 fusion activators2006

    • Author(s)
      Ogura, E., Kondoh, H., Kamachi. Y
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology and 11th FAOBMB Congress
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-06-23
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Y Multiple knockdown of zebrafish group B1 sox genes revealing their redundant functions and expression profiles2006

    • Author(s)
      Okuda, Y., Uchikawa, M., Kondoh, H., Kamachi
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology and 11th FAOBMB Congress
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-06-23
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Shared mechanisms in transcriptional regulation of retina and lens development involving cooperation of SOX2 and Pax62006

    • Author(s)
      Inoue, M., Uchikawa, M., Kamachi. Y., Kondoh, H
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology and 11th FAOBMB Congress
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-06-23
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Multiple knockdown of zebrafish group B1 sox genes revealing their redundant functions in early neural development2006

    • Author(s)
      Okuda, Y., et. al.
    • Organizer
      8th International Meeting on Zebrafish Development and Genetics
    • Place of Presentation
      Madison, WI, USA
    • Year and Date
      2006-06-16
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Multiple knockdown of zebrafish group B1 sox genes reveals their functions and redundancy in early neural development2006

    • Author(s)
      Okuda, Y., Uchikawa, M., Kondoh, H., Kamachi, Y
    • Organizer
      39th Annual Meeting for the Japanese Society of Developmental Biologists
    • Place of Presentation
      Hiroshima
    • Year and Date
      2006-06-16
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 多重ノックダウンによってあきらかになったゼブラフィッシュグループB1 sox遺伝子の初期神経発生における役割と機能重複2006

    • Author(s)
      奥田雄一, ら
    • Organizer
      日本発生生物学会、第39回大会
    • Place of Presentation
      広島
    • Year and Date
      2006-06-01
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary

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Published: 2006-04-01   Modified: 2016-04-21  

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