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Physiological role of fused mRNA of two homeotic genes in crustaceans

Research Project

Project/Area Number 18570208
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Developmental biology
Research InstitutionTokyo University of Pharmacy and Life Science

Principal Investigator

SHIGA Yasuhiro  Tokyo University of Pharmacy and Life Science, School of Life Sciences, Assistant professor (00277253)

Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥300,000)
Fiscal Year 2007: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2006: ¥2,600,000 (Direct Cost: ¥2,600,000)
KeywordsHox / morphological evolution / translational control / gene regulation / Daphnia
Research Abstract

To address the physiological roles of the fusion Hox transcripts observed in crustaceans, fused Ubx/Antp transcript in Daphnia magna was analyzed in detail, and the following results were obtained from this research.
1. Various deficient or mutant versions of D.magna Ubx/Antp were constructed and expressed under the control of the heat shock promoter and the actin promoter, however, it was impossible to overcome the problem of mRNAs instabilities from these mutant/deficient constructs, unfortunately.
2. A part of D. magna Hox cluster including Dfd, Hox3, pb, and lab regions was sequenced completely. Also the Hox cluster region in D. pulex, sequenced by an international research organization, Daphnia Genome Consortium, was annotated by comparison with D. magna genomic and cDNA sequences. In Daphnia Hox clusters, two microRNA producing loci, highly conserved among insect genomes, were also conserved. Putative target sequences for these microRNAs were found in 3'-UTR of D. movie Ubx- and Antp. These findings along with above-mentioned observation that fused Ubx/Antp transcripts were, extremely unstable suggested that translational control of HOM proteins from fused transcripts might be mediated by the functions of these microRNAs.
3. RNA interference method in D. magna embryos was developed and some &RNA-mediated morphological defects were confirmed in the corresponding regions with gene expression domains.

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (13 results)

All 2008 2007 2006

All Journal Article (6 results) (of which Peer Reviewed: 2 results) Presentation (7 results)

  • [Journal Article] Transcriptional readthrough of Hox genes Ubx and Antp and their divergent post-transcriptional control during crustacean evolution2006

    • Author(s)
      Shiga, Y.
    • Journal Title

      Evolution and Development 8

      Pages: 407-414

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Tissue-specific expression of a bHLH-PAS protein homologous to ARNT during the development of crustacean Daphnia magna2006

    • Author(s)
      Toldshita S.
    • Journal Title

      Gene 376

      Pages: 231-239

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Transcriptional readthrough of Hox genes Ubx and Antp and their divergent post-transcriptional control during crustacean evolution2006

    • Author(s)
      Shiga, Y
    • Journal Title

      Evolution and Development 8

      Pages: 407-414

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Tissue-specific expression of a bHLH-PAS protein homologous to ARNT during the development of crustacean Daphnia magna2006

    • Author(s)
      Tokishita, S
    • Journal Title

      Gene 376

      Pages: 231-239

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Transcriptional readthrough of Hox genes Ubx and Antp and their divergent post-transcriptional control during crustacean evolution2006

    • Author(s)
      Shiga, Y., Sagawa, K., Takai, R., Sakaguchi, H., Yamagata, H., Hayashhi, S.
    • Journal Title

      Evolution & Development 8・5

      Pages: 407-414

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Tissue-specific expression of a bHLH-PAS protein homologous to ARNT during the development of crustacean Daphnia magna2006

    • Author(s)
      Tokishita, S., Kimura, S., Mandokoro, Y., Kato, K., Shiga, Y., Takahashi, Y., Ohta, T., Yamagata, H.
    • Journal Title

      Gene 376

      Pages: 231-239

    • Related Report
      2006 Annual Research Report
  • [Presentation] Hox genes in the water flea,Daphnia(Cladocera, Crustacea)2008

    • Author(s)
      Yasuhiro Shiga
    • Organizer
      TMU ImpGrad mini-symposium"Body patterning and evolution of Invertebrates"
    • Place of Presentation
      東京
    • Year and Date
      2008-03-11
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Hox genes in the water flea, Daphnia (Cladocera, Crustacea2008

    • Author(s)
      Shiga, Y
    • Organizer
      TMU ImpGrad mini-symposium "Body patterning and evolution of Invertebrates
    • Place of Presentation
      Tokyo, Japan
    • Year and Date
      2008-03-11
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Hox genes in the water flea, Daphnia(Cladocera, Crustacea).2008

    • Author(s)
      Yasuhiro Shiga
    • Organizer
      TMU ImpGrad mini-symposium"Body patteming and evolution of Invertebrates"
    • Place of Presentation
      東京
    • Year and Date
      2008-03-11
    • Related Report
      2007 Annual Research Report
  • [Presentation] Manual annotation of dcvclopmcntal gcncs in Daphnia pulex by comparison with D.magna,enomic and cDNA sequences2007

    • Author(s)
      Yasuhiro Shiga
    • Organizer
      Daphnia Genomics Consortium Annual Meeting 2007
    • Place of Presentation
      インディアナ、米国
    • Year and Date
      2007-07-08
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Manual annotation of developmental genes in Daphnia pulex by comparison with D. magna genomic and cDNA sequences2007

    • Author(s)
      Shiga, Y
    • Organizer
      Daphnia Genomics Consortium Annual Meeting 2007
    • Place of Presentation
      Indiana, USA
    • Year and Date
      2007-07-08
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Molecular mechanism of DISTAL-LESS induction in developing Daphnia thoracic legs2006

    • Author(s)
      志賀 靖弘
    • Organizer
      日本発生生物学会第39回大会
    • Place of Presentation
      広島
    • Year and Date
      2006-06-01
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Molecular mechanism of DISTAL-LESS induction in developing Daphnia thoracic legs2006

    • Author(s)
      Shiga, Y
    • Organizer
      The 39th annual meeting of the Japanese society of Develpopmental Biologiosts
    • Place of Presentation
      Japan
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary

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Published: 2006-04-01   Modified: 2016-04-21  

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