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Evaluation of the genome stability in the rice cultivars based on indication of the transposable elements

Research Project

Project/Area Number 18580001
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Breeding science
Research InstitutionHokkaido University

Principal Investigator

KISHIMA Yuji  Hokkaido University, Research Faculty of Agr., Asso.Prof. (60192556)

Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,920,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥420,000)
Fiscal Year 2007: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2006: ¥2,100,000 (Direct Cost: ¥2,100,000)
Keywordsrice / wild rice / transposase gene / tranposon / genetic variations / koshihikari / Oryza / 可動性転移因子 / ゲノム / 遺伝変異 / 産地間差異 / トランスポゾンディスプレイ / mping
Research Abstract

Recently, active transposable elements have been abundantly found in plants. Thus, our understanding in evolutionary aspects has accumulated information on the genetic variations caused by transposable elements. However, most of these genetic variations have been described on the genome diversity during speciation. This study was focused on the genetic variations within the cultivar of rice. We have circumstantial evidence of the transpositions of the rice transposon, m-Ping, within the premier rice cultivar, Koshihikari, which was established more than 50 years ago and wildly distributed in the whole Japan. The Koshihikari samples were collected from 84 locations from Fukushima to 14 prefectures in the North. A total of 36 polymorphisms were observed in these Koshihikari collections by transposon display using m-Ping primers. Among these collections, four were obviously originated from other than Koshihikari because the other transposons also showed the similar polymorphisms with m-Ping. It was strongly assumed that the other 32 types are the m-Ping transpositions, which occurred after the Koshihikari was bred. The results represent that transpositions of the transposons can readily inherit to the next generation, and the produced genetic variations are maintained in the different populations within the same cultivars.

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (16 results)

All 2008 2007 2006

All Journal Article (11 results) (of which Peer Reviewed: 4 results) Presentation (4 results) Book (1 results)

  • [Journal Article] Multiple regulatory mechanisms influence the activity of the transposon, Tam3, of Antirrhinum.2008

    • Author(s)
      Uchiyama Takako
    • Journal Title

      New phytologist (In press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Multiple regulatory mechanisms influence the activity of the transposon, Tam3, of Antirrhinum.2008

    • Author(s)
      Uchiyama Takako
    • Journal Title

      New phytologist (in press)

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Rice transposable elements are characterized by various methylation environments in the genome.2007

    • Author(s)
      Takata Miwako
    • Journal Title

      BMC Genomics 8

      Pages: 469-469

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Genetic variations in rice in vitro cultures at the EPSPs-RPS20region.2007

    • Author(s)
      Noro Yuji
    • Journal Title

      Theoretical and Applied Genetics 114

      Pages: 705-711

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] キンギョソウTam3の多彩な転移コントロール2007

    • Author(s)
      内山 貴子
    • Journal Title

      実験医学 25

      Pages: 2490-2495

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] トランスポゾンTam3と宿主の親和的関係2007

    • Author(s)
      貴島祐治
    • Journal Title

      遺伝 別冊21

      Pages: 82-86

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Genetic variations in rice in vitro cultures at the EPSPs - RPS20 region.2007

    • Author(s)
      Noro Yuji
    • Journal Title

      Theoretical and Applied Genetics 114

      Pages: 705-711

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Assorted controls of transposon Tam3 in Antirrhinum.2007

    • Author(s)
      Uchiyama Takako
    • Journal Title

      Experimental Medicine 25

      Pages: 2490-2495

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Acoordinate relationship between transposon Tam3 and the host plant.2007

    • Author(s)
      Kishima Yuji
    • Journal Title

      IDEN, Suppl 21

      Pages: 82-86

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] キンギョソウTam3の多彩なコントロール2007

    • Author(s)
      内山 貴子
    • Journal Title

      実験医学 25

      Pages: 2090-2495

    • Related Report
      2007 Annual Research Report
  • [Journal Article] Genetic variations in rice in vitro cultures at the EPSPs-RPS20 region.2007

    • Author(s)
      Noro Yuji
    • Journal Title

      Theoretical and Applied Genetics 114

      Pages: 705-711

    • Related Report
      2006 Annual Research Report
  • [Presentation] Rice transposable elements reside in specific methylation emvironments of the genome.2007

    • Author(s)
      Kishima Yuji
    • Organizer
      The 5th International Symposium of Rice Functional Genomics
    • Place of Presentation
      つくば市(つくば国際会議場)
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
  • [Presentation] Rice transposable elements reside in specific methylation emvironments of the genome.2007

    • Author(s)
      Yuji Kishima
    • Organizer
      The 5^<th> International Symposium of Rice Functional Genomics
    • Place of Presentation
      Tsukuba International Congress, Tsukuba, ,Japan
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Genetic variation in cultured cells of rice: comparative study of natural variation2006

    • Author(s)
      Kishima Yuji
    • Organizer
      8th International Congress of Plant Molecular Biology,
    • Place of Presentation
      アデレード,オーストラリア(アデレードコンベンションンセンター)
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Genetic variation in cultured cells of rice comparative study of natural variation.2006

    • Author(s)
      Yuji Kishima
    • Organizer
      8^<th> International Congress of Plant Molecular Biology
    • Place of Presentation
      Adelaide, Adelaide Convention Centre, Australia
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] 遺伝 別冊212007

    • Author(s)
      貴島祐治
    • Publisher
      トランスポゾンTam3と宿主の親和的関係
    • Related Report
      2006 Annual Research Report

URL: 

Published: 2006-04-01   Modified: 2016-04-21  

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