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Engineering of aromatic ring dioxygenase and application to combinatorial chemistry

Research Project

Project/Area Number 18580080
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied microbiology
Research InstitutionUniversity of Miyazaki

Principal Investigator

HIROSE Jun  University of Miyazaki, Department of Applied Chemistry, Associate Professor (60264363)

Co-Investigator(Kenkyū-buntansha) FURUKAWA Kensuke  Beppu University, Department of Food and Bioscience, Professor (90221556)
YUI Toshifumi  University of Miyazaki, Department of Applied Chemistry, Associate Professor (50230610)
SUGAMOTO Kazuhiro  University of Miyazaki, Department of Applied Chemistry, Assistant Professor (10274771)
YOKOI Haruhiko  University of Miyazaki, Department of Applied Chemistry, Professor (00253815)
Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,870,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥270,000)
Fiscal Year 2007: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2006: ¥2,700,000 (Direct Cost: ¥2,700,000)
Keywordsaromatic-ring dioxygenase / combinatorial chemistry / DNA shuffling / chimeric enzyme / molecular dynamics method / biphenyl dioxygenase / ビフェニルジオキシゲナーゼ / オキシゲナーゼ
Research Abstract

'Aromatic ring dioxygenase' is enzyme which is involved in the initial oxidation of aromatic-ring by bacteria. This enzyme can be used for the synthesis of pharmaceutical and other industrially useful compounds because of its capability in introducing regio- and stereospecific hydroxyl groups into aromatic ring. In this research project, we detected and identified reaction products which were catalyzed by many mutant biphenyl dioxygenases (BphA). Several man-made compounds, for example 1-phenylpyrazole (1PP) or indan were used as substrate. Of the 20 different chimeric BphAs, seven enzymes produced more efficiently 'regio-specifically hydroxylated 1PPs than wild type BphA'. Two products obtained from the reaction catalyzed by BphA (2039) were identified with HRMS and NMR. In the conversion of IPP with all chimeric BphAs, the rate of reaction products between these compounds varied with the chimeric BphAs used; BphA (2029) and BphA (2030) yielded more monohydroxylated compound than the other chimeric enzymes. From computer-aided simulation of the complex between the structure of BphA (2039) and IPP, it was suggested that difference in reaction between chimeric BphA and 1PP is due to change in the manner of binding of 1PP to the active site of BphAs. In the other experiment, another substrate, indan was converted with mutant BphAs. Analysis of the reaction product (1-indanol) by HPLC with chiral separation column revealed the different enantiomeric excess between the reactions by wild-type BphA and mutant BphA. This study demonstrated that mutant BphA can be used to produce rare mono-or dihydroxylated aromatic compounds which deserve to be used as the building blocks of combinatorial chemistry.

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (12 results)

All 2008 2007 2006 Other

All Journal Article (7 results) (of which Peer Reviewed: 2 results) Presentation (3 results) Remarks (2 results)

  • [Journal Article] Microbial degradation of PCB:biochemicaland molecular features2008

    • Author(s)
      Kensuke Furukawa, Hidehiko Fujihara
    • Journal Title

      Journal of Bioscience and Biotechnology 105巻

      Pages: 433-449

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Microbial degradation of PCB : biochemical and molecular features2008

    • Author(s)
      Kensuke, Furukawa, Hidehiko, Fujihara
    • Journal Title

      Journal of Bioscience and Biotechnology 105

      Pages: 433-449

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] どこまで改造できるのか?タンパク質は2007

    • Author(s)
      広瀬 遵
    • Journal Title

      生物工学会誌 85巻

      Pages: 453-453

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] To what extent can protein be engineered?2007

    • Author(s)
      Jun, Hirose
    • Journal Title

      Seibutsu-kougaku Kaishi 85

      Pages: 453-453

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Oxygenase and dehalogenase:molecular approaches to efficient degradation of chlorinated environmental pollutants2006

    • Author(s)
      Kensuke Furukawa
    • Journal Title

      Bioscience, Biotechnology and Biochemistry 70巻

      Pages: 2335-2348

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Oxygenase and dehalogenase : molecular approaches to efficient degradation of chlorinated environmental pollutants2006

    • Author(s)
      Kensuke, Furukawa
    • Journal Title

      Bioscience, Biotechnology and Biochemistry 70

      Pages: 2335-2348

    • NAID

      10018525300

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Oxygenase and Dehalogenase : Molecular Approaches to Efficient Degaradation of Chlorinated Environmental Pollutants2006

    • Author(s)
      Kensuke Furukawa
    • Journal Title

      Bioscience,Biotechnology and Biochemistry 70巻・10号

      Pages: 2335-2348

    • Related Report
      2006 Annual Research Report
  • [Presentation] キメラビフェニルジオキシゲナーゼによる1-フェニルピラゾールの位置選択的水酸化2008

    • Author(s)
      広瀬 遵、西村 恵、横井 春比古、菅本 和寛、湯井 敏文、藤原 秀彦、古川 謙介
    • Organizer
      日本農芸化学会2008年度大会
    • Place of Presentation
      名城大学(名古屋)
    • Year and Date
      2008-03-28
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Regiospecific hydroxylation of 1-phenylpyrazole by chimeric biphenyl dioxygenase2008

    • Author(s)
      Jun, Hirose, Megumi, Nishimura, Haruhiko, Yokoi, Kazuhiro, Sugamoto, Toshifumi, Yui, Hidehiko, Fujiwara, Kensuke, Furukawa
    • Organizer
      Annual Meeting of Japan Society for Bioscience, Biotechnology, and Agrochemistry
    • Place of Presentation
      Meijo University(Nagoya)
    • Year and Date
      2008-03-28
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] キメラビフェニルジオキシゲナーゼによる1-フェニルピラゾールの位置選択的水酸化2008

    • Author(s)
      廣瀬 遵、西村 恵、横井 春比古、菅本 和寛、湯井 敏文、藤原 秀彦、古川 謙介
    • Organizer
      日本農芸化学会2008年度大会
    • Place of Presentation
      名古屋
    • Year and Date
      2008-03-28
    • Related Report
      2007 Annual Research Report
  • [Remarks] 「研究成果報告書概要(和文)」より

    • URL

      http://www.chem.miyazaki-u.ac.jp/~yokoi/research/dioxygenase.htm

    • Related Report
      2007 Final Research Report Summary
  • [Remarks]

    • URL

      http://www.chem.miyazaki-u.ac.jp/~yokoi/research/dioxygenase.htm

    • Related Report
      2007 Annual Research Report

URL: 

Published: 2006-04-01   Modified: 2016-04-21  

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