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Analysis of interaction between B. subtilis re, sponse regulaator DegU and its target gene promoters

Research Project

Project/Area Number 18580082
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied microbiology
Research InstitutionTokai University

Principal Investigator

OGURA Mitsuo  Tokai University, Institute of Oceanic Research and Development, Professor (80204163)

Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥4,010,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥510,000)
Fiscal Year 2007: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2006: ¥1,800,000 (Direct Cost: ¥1,800,000)
KeywordsB. subtilis / Two-component system / Chemotaxis / DNA binding / Phosnhorvlation / Gene expression / 転写因子 / リン酸化
Research Abstract

The response regulator DegU and its cognate histidine kinase DegS constitute a two-component system in the Gram-positive soil bacterium Bacillus subtilis. Unphosphorylated and phosphorylated forms of DegU are known to activate target gene transcription in B. subtilis. Although phosphorylated DegU (DegU-P) regulates more than one hundred and twenty genes, the targets of unphosphorylated DegU are unknown, except for comK. We found that the fla/che (flagella and chemotaxis) operon is positively regulated by unphosphorylated DegU. The effect was most prominent in a strain bearing the functional swrAA gene, a positive regulator of fla/che.
Unphosphorylated DegU bound to two regions in the flalche regulatory region containing an inverted repeat-like sequence that resembles the inverted repeat (IR) in the comK promoter. Mutational analysis revealed that positive regulation of fla/che by SwrAA requires DegU-binding. An analysis of the DegU-P-regulated gene sacB (levansucrase gene) by footprint and mutational analyses revealed that DegU-P bound to a direct repeat (DR) of the DegU-recognition motifs, which has been shown to be functional in vivo, while unphosphorylated DegU did not. These results strongly suggest that the arrangement of the DegU-binding motifs determines whether unphosphorylated DegU or DegU-P binds to the sacB promoter. The hypothesis was confirmed by observing degS-independent expression when the DR in the sacB-lacZ fusion was changed to an IR, suggesting that unphosphorylated DegU regulates the sacB promoter through the newly created IR. This was confirmed by binding of unphosphorylated DegU to the IR in the sacB promoter. This study demonstrated that DegU positively regulates flgB and sacB through its binding to the promoter regions. We demonstrated that DegU-P prefers binding to DR but not to IR in the sacB promoter.

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (43 results)

All 2008 2007 2006

All Journal Article (25 results) (of which Peer Reviewed: 11 results) Presentation (16 results) Book (2 results)

  • [Journal Article] Identification of the sequences recognized by the Bacillus subtilis response regulator YrkP2008

    • Author(s)
      Ogura, M., Ohsawa, T., and Tanaka, T.
    • Journal Title

      Bioscience Biotechnology and Biochemistry 72

      Pages: 186-196

    • NAID

      10027523358

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Characterization of DegU-dependent expression of bpr in Bacillus subtilis2008

    • Author(s)
      Tsukahara, K., and Ogura, M.
    • Journal Title

      FEMS Microbiology Letters 280

      Pages: 8-13

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Promoter selectivity of the Bacillus subtilis response regulator DegU,a positive regulator of the fla/che operon and sacB2008

    • Author(s)
      Tsukahara, K., and Ogura, M.
    • Journal Title

      BMC Microbiology 8

      Pages: 8-8

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Identification of the sequences recognized by the Bacillus subtilis response regulator YrkP2008

    • Author(s)
      Ogura, M., Ohsawa, T., Tanaka, T
    • Journal Title

      Bioscience Biotechnology and Biochemistry 72

      Pages: 186-196

    • NAID

      10027523358

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Characterization of DegU-dependent expression of bpr in Bacillus subtil2008

    • Author(s)
      Tsukahara, K., Ogura, M
    • Journal Title

      FEMS Microbiology Letters 280

      Pages: 8-13

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Promoter selectivity of the Bacillus subtilis response regulator DegU, a positive regulator of the flalche operon and sacB2008

    • Author(s)
      Tsukahara, K, Ogura, M
    • Journal Title

      BMC Microbiology 8

      Pages: 8-8

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Identification of the sequences recognized by the Bacillus sublilis response regulator YrkP2008

    • Author(s)
      Ogura, M., Ohsawa, T., and Tanaka, T.
    • Journal Title

      Biosci. Biotech. Biochem. 72

      Pages: 186-196

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of DegU-dependent expression of bpr in Bacillus subtilis2008

    • Author(s)
      Tsukahara, K., and Ogura, M.
    • Journal Title

      FEMS Microbiol. Lett. 290

      Pages: 8-13

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Promoter selectivity of the Bacillus subtilis response regulator DegU,apositive regulator of the fla/che operon and sacB2008

    • Author(s)
      Tsukahara, K., and Ogura, M.
    • Journal Title

      BMC Microbiology 8

      Pages: 8-8

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 枯草菌Rap-Phr系による細胞間コミュニケーション2007

    • Author(s)
      小倉 光雄
    • Journal Title

      化学と生物 45

      Pages: 744-746

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Bacillus subtilis rapD,a direct target of transcription repression by RghR,negatively regulates srfA expression2007

    • Author(s)
      Ogura, M., and Fujita Y.
    • Journal Title

      FEMS Microbiology Letters 268

      Pages: 73-80

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] The Bacillus subtilis NatK-NatR two-component system regulates expression of the natAB operon encoding an ABC transporter for sodium ion extrusion2007

    • Author(s)
      Ogura, M., Tsukahara, K., Hayashi, K., and Tanaka, T.
    • Journal Title

      Microbiology 153

      Pages: 667-675

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Cell-cell communication by Rap-Phr system in B. subtilis2007

    • Author(s)
      Ogura, M
    • Journal Title

      Kagaku to Seibustu 45

      Pages: 744-746

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Bacillus subtilis rapD, a direct target of transcription repression by RghR, negatively regulates srfA expression2007

    • Author(s)
      Ogura, M., Fujita, Y
    • Journal Title

      FEMS Microbiology Letters 268

      Pages: 73-80

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] The Bacillus subtilis NatK-NatR two-component system regulates expression of the natAB operon encoding an ABC transporter for sodium ion extrusion2007

    • Author(s)
      Ogura, M., Tsukahara, K., Hayashi, K, Tanaka, T
    • Journal Title

      Microbiology 153

      Pages: 667-675

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Competence development : extracellular regulation and the emergence of bistability2007

    • Author(s)
      Ogura, M
    • Journal Title

      Global regulatory network in Bacillus subtilis

      Pages: 127-188

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Global regulatory network2007

    • Author(s)
      小倉 光雄
    • Journal Title

      Bacillus subtilis, Competence development:extracellular regulation an

      Pages: 172-188

    • Related Report
      2007 Annual Research Report
  • [Journal Article] Bacillus subtilis rapD, a direct target of transcription repression by RghR, negatively regulates srfA expression.2007

    • Author(s)
      Ogura, M., Fujita Y.
    • Journal Title

      FEMS Microbiology Letters 268

      Pages: 73-80

    • Related Report
      2006 Annual Research Report
  • [Journal Article] The Bacillus subtilis NatK-NatR two-component system regulates expression of the natAB operon encoding an ABC transporter for sodium ion extrusion.2007

    • Author(s)
      Ogura, M., Tsukahara, K., Hayashi, K., Tanaka, T.
    • Journal Title

      Microbiology 153

      Pages: 667-675

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Superoxide stress decreases expression of srfA through inhibition of transcription of the comQXP quorum-sensing locus in Bacillus subtilis2006

    • Author(s)
      Ohsawa, T., Tsukahara, K., Sato, T., and Ogura, M.
    • Journal Title

      Journal of Biochemistry 139

      Pages: 203-211

    • NAID

      10018847562

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Bacillus subtilis RghR(YvaN)represses rapG and rapH,which encode inhibitors of expression of the srfA operon2006

    • Author(s)
      Hayashi, K., Tsukahara, K., Kobayashi, K., Ogasawara, N., and Ogura, M.
    • Journal Title

      Molecular Microbiology 59

      Pages: 1714-1729

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Superoxide stress decreases expression of srfA through inhibition of transcription of the cornQXP quorum -sensing locus in Bacillus subtilis2006

    • Author(s)
      Ohsawa, T., Tsukahara, K, Sato, T., Ogura, M
    • Journal Title

      Journal of Biochemistry 139

      Pages: 203-211

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Bacillus subtilis RghR(YvaN) represses rapG and rapH, which encode inhibitors of expression of the srfA operon2006

    • Author(s)
      Hayashi, K, Tsukahara, K, Kobayashi, K, Ogasawara, N., Ogura, M
    • Journal Title

      Molecular Microbiology 59

      Pages: 1714-1729

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Superoxide stress decreases expression of srfA through inhibition of transcription of the comQXP quorum-sensing locus in Bacillus subtilis.2006

    • Author(s)
      Ohsawa, T., Tsukahara, K., Sato, T., Ogura, M.
    • Journal Title

      Journal of Biochemistry 139

      Pages: 203-211

    • NAID

      10018847562

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Bacillus subtilis RghR (YvaN) represses rapG and rapH, which encode inhibitors of expression of the srfA operon.2006

    • Author(s)
      Hayashi, K., Tsukahara, K., Kobayashi, K., Ogasawara, N., Ogura, M.
    • Journal Title

      Molecular Microbiology 59

      Pages: 1714-1729

    • Related Report
      2006 Annual Research Report
  • [Presentation] 枯草菌レスポンスレギュレーターDegUの自己制御系2008

    • Author(s)
      小倉 光雄
    • Organizer
      第2回日本ゲノム微生物学会年会
    • Place of Presentation
      大阪大学コンベンションセンター
    • Year and Date
      2008-03-06
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
  • [Presentation] Autoregulation system of B. subtilis response regulator DegU2008

    • Author(s)
      Ogura, M
    • Organizer
      Second Conference of Society for Genome Microbiology Japan
    • Place of Presentation
      Ohsaka
    • Year and Date
      2008-03-06
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] The NatK-NatR two-component system regulates expression of the natAB operon encoding an ABC transporter for sodium ion extrusion2007

    • Author(s)
      小倉 光雄, 塚原 健介, 林 健太郎, 田中 暉夫
    • Organizer
      4th Conference on Functional Genomics of Gram-positive Microorganisms
    • Place of Presentation
      Pisa,Italy
    • Year and Date
      2007-06-25
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
  • [Presentation] The NatK-NatR natAB two-component system regulates expression of the operon encoding an ABC transporter for sodium ion extrusion2007

    • Author(s)
      Ogura, M., Tsukahara, K, Hayashi, K, Tanaka, T
    • Organizer
      Fourth Conference on Functional Genomics of Gram-positive Microorganisms
    • Place of Presentation
      Italy
    • Year and Date
      2007-06-25
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 枯草菌レスポンスレギュレーターDegUのDegSによるリン酸化は標的プロモーターへの結合を増強する2007

    • Author(s)
      大沢 拓, 塚原 健介, 小倉 光雄
    • Organizer
      日本農芸化学会2006年度大会
    • Place of Presentation
      東京農業大学
    • Year and Date
      2007-03-26
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Phosphorylation of B. subtilis response regulator DegU by DegS enhances its binding to the target Promoters2007

    • Author(s)
      Ohsawa, T., Tsukahara, T., Ogura, M
    • Organizer
      Conference of Japan Society for Bioscience, Biotechnology and Agrochemistry
    • Place of Presentation
      Tokyo
    • Year and Date
      2007-03-26
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 枯草菌のリン酸化型DegUによる標的遺伝子発現制御機構2007

    • Author(s)
      小倉 光雄
    • Organizer
      第1回日本ゲノム微生物学会年会
    • Place of Presentation
      上総アカデミアセンター
    • Year and Date
      2007-03-02
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Regulation mechanisms of expression of DegU-P-regulated genes in B. subtilis2007

    • Author(s)
      Ogura, M
    • Organizer
      First Conference of Society for Genome Microbiology Japan
    • Place of Presentation
      Chiba
    • Year and Date
      2007-03-02
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] リン酸化型DegUによる枯草菌のPGA合成酵素遺伝子pgsBの発現制御2006

    • Author(s)
      大沢 拓, 塚原 健介, 小倉 光雄
    • Organizer
      分子生物学会フォーラム
    • Place of Presentation
      名古屋国際会議場
    • Year and Date
      2006-12-07
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Regulation of expression of the B. subtilis PGA synthetase gene pgsB by phosphorylated DegU2006

    • Author(s)
      Ohsawa, T., Tsukahara, K., Ogura, M
    • Organizer
      Molecular Biology Society of Japan Forum 2006
    • Place of Presentation
      Nagoya
    • Year and Date
      2006-12-07
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] ポリグルタミン酸による排水浄化についての研究2006

    • Author(s)
      小倉 光雄, 長澤 寛道, 作田 庄平
    • Organizer
      漢方医薬研究振興財団研究発表会
    • Place of Presentation
      東海大学校友会館
    • Year and Date
      2006-10-28
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Clean up of sewage by using poly-gamma glutamate2006

    • Author(s)
      Ogura, M., Nagasawa, K., Sakuda, S
    • Organizer
      Conference of Kanpou Science Foundation
    • Place of Presentation
      Tokyo
    • Year and Date
      2006-10-28
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] γPGA合成酵素遺伝子発現とγPGA生産のDegU,DegQ,SwrAによる制御2006

    • Author(s)
      塚原 健介, 大沢 拓, 小倉 光雄
    • Organizer
      グラム陽性細菌のゲノム生物学研究会
    • Place of Presentation
      立教大学
    • Year and Date
      2006-09-01
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Expression of pgsB and production of PGA are regulated by DegU, DegQ and SwrA2006

    • Author(s)
      Tsukahara, K., Ohsawa, T., Ogura, M
    • Organizer
      Meeting of Genome Biology on Gram-Positive Microorganisms
    • Place of Presentation
      Tokyo
    • Year and Date
      2006-09-01
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] A genome-wide screening of the Bacillus subtilis competence gene set2006

    • Author(s)
      小倉 光雄, 田中 暉夫, 藤田 泰太郎, 山根 国男, 佐藤 勉, 小林 和夫, 小笠原 直毅
    • Organizer
      20th International Congress of Biochemistry and Molecular Biololgy
    • Place of Presentation
      京都国際会館
    • Year and Date
      2006-06-20
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] A genome-wide screening of the Bacillus subtilis competence gene set2006

    • Author(s)
      Ogura, M., Tanaka, T., Fujita, Y., Yamane, K, Sato, T., Kobayashi, K., Ogasawara, N
    • Organizer
      20th International Congress of Biochemistry and Molecular Biology
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-06-20
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] Global regulatory network in Bacillus subtilis2007

    • Author(s)
      小倉 光雄
    • Publisher
      Transworld Research Network,Kerala,India
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] Global regulatory network in Bacillus subtilis.2007

    • Author(s)
      小倉 光雄
    • Publisher
      Competence development:extracellular regulation and the emergence of bistability.
    • Related Report
      2007 Annual Research Report

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Published: 2006-04-01   Modified: 2016-04-21  

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