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Search on the genome scale of mRNAs that are translated under the abiotic stresses

Research Project

Project/Area Number 18580338
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied molecular and cellular biology
Research InstitutionNara Institute of Science and Technology

Principal Investigator

KATO Ko  Nara Institute of Science and Technology, Graduate School of Biological Sciences, Assistant Professor (80283935)

Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,950,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2007: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2006: ¥2,000,000 (Direct Cost: ¥2,000,000)
KeywordsTranslational regulation / Abiotic stress / Arabidopsis thaliana / DNA microarray / Polvsome profile
Research Abstract

Drastic translational changes have been observed in plants under various abiotic stress conditions such as elevated temperature, high salinity, drought, and O2 deprivation. Common features of responses at the translational level to above stresses are global repression of translation and the existence of a fraction of differentially regulated mRNAs that are refractory to the repression. Less is known, however, about the regulation or regulatory networks at the translational levels compared to the transcriptional levels.
In this study, we carried out genome-wide analysis of translational regulation in Arabidopsis (Arabidopsis thaliana) suspension cell culture subjected to elevated temperature (heat stress) and high salinity (salt stress) conditions using DNA microarray by comparing the translation state of individual mRNAs before and after the application of a stimulus. On that basis, translational regulations under the both stress conditions were compared. It was expected that this comparative analysis would allow gaining a better understanding of the mechanism, the regulatory network, or biological significance of translational control in plants response to abiotic stress than previous reports focused on a single abiotic stress. Our results showed that both elevated temperature and high salinity elicit the cells to translation repression of most mRNA species, while some were defied to or sensitive to the repression. Notably, we found that the behavior of individual mRNA species at the translational levels were similar between in plants response to both stresses.

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (17 results)

All 2008 2007 2006

All Journal Article (7 results) (of which Peer Reviewed: 4 results) Presentation (10 results)

  • [Journal Article] Preferential translation mediated by the Hsp81-3 5' -UTR during heat shock involves a ribosome entry at the 5' -end rather than an internal site in Arabidopsis suspension cells.2008

    • Author(s)
      Matsuura, H.
    • Journal Title

      J. Biosci. Bioeng. 105

      Pages: 39-47

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Improved translation efficiency in chrysanthemum and torenia with a translational enhancer derived from the tobacco alcohol dehydrogenase gene.2008

    • Author(s)
      Aida, R.
    • Journal Title

      Plant Biotechnology 25

      Pages: 69-75

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] The 5'-Untranslated Region of the Oryza sativa Alcohol Dehydrogenase Gene Functions as a Translational Enhancer in Monocotyledonous Plant Cells.2008

    • Author(s)
      Sugio, T.
    • Journal Title

      J. Biosci. Bioeng. 105

      Pages: 300-302

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Preferential translation mediated by the Hsp81-3 5'-UTR during heat shock involves a ribosome entry at the 5'-end rather than an internal site in Arabidopsis suspension cells2008

    • Author(s)
      Matsuura, H
    • Journal Title

      J Blosci. Bioeng 105 (1)

      Pages: 39-47

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Improved translation efficiency in chrysanthemum and torenia with a translational enhancer derived from the tobacco alcohol dehydrogenase gene2008

    • Author(s)
      Aida, R
    • Journal Title

      Plant Biotechnology 25 (1)

      Pages: 69-75

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] The 5'-Untranslated Region of the Oryza sativa Alcohol Dehydrogenase Gene Functions as a Translational Enhancer in Monocotyledonous Plant Cells2008

    • Author(s)
      Sugio, T
    • Journal Title

      J Biosci. Bioeng 105 (3)

      Pages: 300-302

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Preferential translation mediated by the Hsp81-3 5'-UTR during heat shock involves a ribosome entry at the 5'-end rather than an internal site in Arabidopsis suspension cells.2008

    • Author(s)
      Matsuura, H.
    • Journal Title

      J. Biosci. Bioeng. 105

      Pages: 39-47

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Presentation] シロイヌナズナ培養細胞の翻訳段階における熱ストレス応答のゲノムワイド解析2008

    • Author(s)
      松浦 秀幸
    • Organizer
      日本植物生理学会
    • Place of Presentation
      札幌
    • Year and Date
      2008-03-19
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
  • [Presentation] Genome wide analysis of heat stress response in translation step of Arabidopsis thaliana cultured cells2008

    • Author(s)
      Matsuura, Hideyuki
    • Organizer
      The 49 th Annual meeting of JSPP
    • Place of Presentation
      Sapporo
    • Year and Date
      2008-03-19
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] シロイヌナズナHsp81-3 5'UTRを介した熱ストレス時の翻訳には、IRESではなくキャップ構造を含む5'端へのリボソームエントリーが重要である2007

    • Author(s)
      松浦 秀幸
    • Organizer
      日本RNA学会
    • Place of Presentation
      名古屋
    • Year and Date
      2007-07-28
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Preferential translation mediated by the Hsp81-3 5'-UTR during heat shock involves a ribosome entry at the 5'-end rather than an internal site in Arabidopsis suspension cells2007

    • Author(s)
      Matsuura, Hideyuki
    • Organizer
      The 9th RNA meeting
    • Place of Presentation
      Nagoya
    • Year and Date
      2007-07-28
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] シロイヌナズナHsp81-3 5' UTRを介した熱ストレス時の翻訳には、IRESではなくキャップ構造を含む5'端へのリボソームエントリーが重要である2007

    • Author(s)
      松浦 秀幸
    • Organizer
      日本RNA学会
    • Place of Presentation
      名古屋
    • Year and Date
      2007-07-28
    • Related Report
      2007 Annual Research Report
  • [Presentation] Search IRES element of the cellular mRNA in Arabidopsis2007

    • Author(s)
      Kawamura Kazue
    • Organizer
      6th symposium on Post Transcriptional Regulation of Plant Gene Expression
    • Place of Presentation
      Carry-le-Rouet, France
    • Year and Date
      2007-05-10
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Search IRES element of the cellular mRNA in Arabidopsis.2007

    • Author(s)
      Kawamura Kazue
    • Organizer
      6th symposium on Post Transcriptional Regulation of Plant Gene Expression
    • Place of Presentation
      Carry-le-Rouet, France
    • Year and Date
      2007-05-10
    • Related Report
      2007 Annual Research Report
  • [Presentation] Search IRES element of the cellular mRNA in Arabidopsis2007

    • Author(s)
      Kawamura, Kazue
    • Organizer
      The 6th symposium on Post Transcriptional Regulation of Plant Gene Expression
    • Place of Presentation
      Carry-le-Rouet, France
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Preferential Translation Via 5'untranslated Region of HSP90 gene During Heat Stress in Arabidonsis.2006

    • Author(s)
      Matsuura Hideyuki
    • Organizer
      RNA 2006
    • Place of Presentation
      Seattle, USA.
    • Year and Date
      2006-06-20
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Preferential Translation Via 5'untranslated Region of HSP90 gene During Heat Stress in Arabidopsis2006

    • Author(s)
      Matsuura, Hideyuki
    • Organizer
      RNA 2006
    • Place of Presentation
      Seattle, USA
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary

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Published: 2006-04-01   Modified: 2016-04-21  

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