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Synthesis and properties of a novel oligonucleotides containing a benzene-phosphate backbone

Research Project

Project/Area Number 18590095
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Drug development chemistry
Research InstitutionGifu University

Principal Investigator

UENO Yoshihito  Gifu University, Faculty of Engineering, Associate Professor (20250467)

Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,980,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥480,000)
Fiscal Year 2007: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2006: ¥1,900,000 (Direct Cost: ¥1,900,000)
KeywordsNucleic Acids / DNA / benzene / detection / siRNA / beacon / microarray / gene / ペンゼン
Research Abstract

We have demonstrated the synthesis and properties of the novel molecular beacons (MBs) containing the benzene-phosphate backbone at the stem moieties. It was found that the problem of sequence dependency of fluorescence intensity of MBs can be improved by introducing using the benzene-phosphate at the stem moieties
Recently, a co-crystal structure of a PAZ domain in RISC (RNA-induced silencing complex) and a 9-mer RNA revealed that the PAZ protein anchors the 2-nt 3overhang of the siRNA like duplex within the binding pocket composed of highly conserved aromatic residues. We have demonstrated the synthesis and properties of novel siRNAs containing hydrophobic residues at the overhang region. It was found that the siRNAs containing the hydrophobic residues at the overhang region have silencing activities equal to that of a normal siRNA.

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (19 results)

All 2007 2006

All Journal Article (3 results) (of which Peer Reviewed: 1 results) Presentation (16 results)

  • [Journal Article] RNAi knockdown of caspase-activated DNase inhibits rotenone-induce DNA fragmentation in HeLa cells2007

    • Author(s)
      Y. Ueno, et. al.
    • Journal Title

      Neurochemistry International 50

      Pages: 601-606

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Synthesis and properties of a novel molecular beacon containing a benzene-phosphate backbone at a stem moiety2007

    • Author(s)
      Y. Ueno, et. al.
    • Journal Title

      Nucleic Acids Sympo. Ser. 51

      Pages: 293-294

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Synthesis and properties of a novel molecular beacon containing a benzene-phosphate backbone at a stem moiety2007

    • Author(s)
      Y. Ueno, et. al.
    • Journal Title

      Nucleic Acids Sympo. Ser 51

      Pages: 293-294

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Synthesis and properties of a novel molecular beacon containing a benzene-phosphate backbone at a stem moiety2007

    • Author(s)
      上野 義仁
    • Organizer
      第34回核酸化学シンポジウム
    • Place of Presentation
      東京大学
    • Year and Date
      2007-11-20
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Synthesis and properties of a novel molecular beacon containing a benzene-phosphate backbone at a stem moiety2007

    • Author(s)
      Y. Ueno, et. al.
    • Organizer
      34th Nucleic Acids Symposium
    • Place of Presentation
      the University of Tokyo
    • Year and Date
      2007-11-20
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] リン酸アミデート結合を含むsiRNAの合成とその遺伝子発現抑制効果2007

    • Author(s)
      上野 義仁
    • Organizer
      日本化学会第87春季年会
    • Place of Presentation
      関西大学
    • Year and Date
      2007-03-26
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] ベンゼン-リン酸骨格を導入した新規モレキュラー・ビーコンの開発(1)2007

    • Author(s)
      上野 義仁
    • Organizer
      日本化学会第87春季年会
    • Place of Presentation
      関西大学
    • Year and Date
      2007-03-26
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] ベンゼン-リン酸骨格を導入した新規モレキュラー・ビーコンの開発(2)2007

    • Author(s)
      上野 義仁
    • Organizer
      日本化学会第87春季年会
    • Place of Presentation
      関西大学
    • Year and Date
      2007-03-26
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Synthesis and properties of novel siRNAs containing a phosphoramidate linkage2007

    • Author(s)
      Y. Uena, et. al.
    • Organizer
      The Chemical Society of Japan 87th Annual Meeting
    • Place of Presentation
      Kansai University
    • Year and Date
      2007-03-26
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Synthesis and properties of a novel molecular beacon containing a benzene-phosphate backbone (1)2007

    • Author(s)
      Y. Ueno, et. al.
    • Organizer
      The Chemical Society of Japan, 87th Annual Meeting
    • Place of Presentation
      Kansai University
    • Year and Date
      2007-03-26
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Synthesis and properties of a novel molecular beacon containing a benzene-phosphate backbone (2)2007

    • Author(s)
      Y., Ueno, et. al.
    • Organizer
      The Chemical Society of Japan 87th Annual Meeting
    • Place of Presentation
      Kansai University
    • Year and Date
      2007-03-26
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 細胞内タンパク質の核酸結合・分解活性を利用した遺伝子発現抑制会子の開発2007

    • Author(s)
      上野 義仁
    • Organizer
      第18回名古屋コンファレンス
    • Place of Presentation
      名古屋大学
    • Year and Date
      2007-01-18
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Development of novel gene-regulating molecules2007

    • Author(s)
      Y. Ueno
    • Organizer
      Nagoya Conference
    • Place of Presentation
      Nagoya University
    • Year and Date
      2007-01-18
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Synthesis and properties of novel siRNAs containing hydroPhobic residues at the overhang region2006

    • Author(s)
      上野 義仁
    • Organizer
      第16回アンチセンスシンポジウム
    • Place of Presentation
      京都国際会議場
    • Year and Date
      2006-11-27
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Synthesis and properties of a novel molecular beacon containing a benzene-phosphate backbone at a stem moiety2006

    • Author(s)
      上野 義仁
    • Organizer
      第16回アンチセンスシンポジウム
    • Place of Presentation
      京都国際会議場
    • Year and Date
      2006-11-27
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Synthesis and properties of oligonucleotides containing 5' -amino-2' -fluoro-2',5' -dideoxyuridine2006

    • Author(s)
      上野 義仁
    • Organizer
      第16回アンチセンスシンポジウム
    • Place of Presentation
      京都国際会議場
    • Year and Date
      2006-11-27
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Synthesis and properties of novel siRNAs containing hydrophobic residues at the overhang region2006

    • Author(s)
      Y. Ueno, et. al.
    • Organizer
      16th Antisense Symposium
    • Place of Presentation
      Kyoto International Conference Center
    • Year and Date
      2006-11-27
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Synthesis and properties of a novel molecular beacon containing a benzene-phosphate backbone at a stem moiety2006

    • Author(s)
      Y. Ueno, et. al.
    • Organizer
      16th Antisense Symposium
    • Place of Presentation
      Kyoto International Conference Center
    • Year and Date
      2006-11-27
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Synthesis and properties of oligonucleotides containing 5'-amino-2'-fluoro-2',5'-dideoxyuridine2006

    • Author(s)
      Y. Ueno, et. al.
    • Organizer
      16th Antisense Symposium
    • Place of Presentation
      Kyoto International Conference Center
    • Year and Date
      2006-11-27
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary

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Published: 2006-04-01   Modified: 2016-04-21  

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