• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Bidirectional approach for elucidation of genomic imprinting mechanism

Research Project

Project/Area Number 18590313
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Human genetics
Research InstitutionSaga University

Principal Investigator

SOEJIMA Hidenobu  Saga University, Faculty of Medicine, Professor (30304885)

Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,750,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥450,000)
Fiscal Year 2007: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2006: ¥1,800,000 (Direct Cost: ¥1,800,000)
Keywordsgenomic imprinting / KIP2 / LIT1 imprinted domain / Beckwith-Wiedemann syndrome / non-coding RNA / non-coding RNA / non-codin RNA
Research Abstract

Genomic imprinting is an epigenetic phenomenon that is responsible for parent-of-origin specific expression of genes. A disruption of imprinting at 11p 15.5 develops Beckwith-Wiedemann syndrome (BWS) and tumors. To clarify a molecular mechanism of genomic imprinting, we studied following issues.
1. Analysis of Japanese cases of BWS revealed a significantly lower frequency of H19-DMR hypermethylation and a higher frequency of chromosome abnormality than in North American and European patients. These results suggest that susceptibility to epigenetic and genetic alterations differs between the two groups.
2. Truncation cells in which short transcripts, 0.2 kb, 1.1 kb, and 6.6 kb, of LIT1were expressed were generated using a mouse hybrid cell containing human paternal chromosome 11. qRT-PCR revealed that expression of an imprinted KvLQT1 gene was drastically elevated in these cells. The result suggested that a non-coding transcript of LIT1 gene regulates expression of imprinted genes.
3. To identify a novel regulator for genomic imprinting, we tried to generate specific cells, which are able to be detected an imprinting disruption by neomycin-resistance. We constructed a knock-in vector in which IRES-neo cassette were inserted into downstream of an imprinted Kip2 gene. The vector was transfected into mouse ES cells ; however, no recombinant clone was obtained to date. Thus, we changed a construction of the vector, and we are now screening of ES cells. After obtained recombinant clones, we will generate Kip2-IRES-neo knock-in mice and establish mouse embryonic fibroblast.

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (52 results)

All 2007 2006 Other

All Journal Article (26 results) (of which Peer Reviewed: 9 results) Presentation (23 results) Book (2 results) Remarks (1 results)

  • [Journal Article] Japanese and North American/European patients with Beckwith-Wiedemann syndrome have different frequencies of some epigenetic and genetic alterations2007

    • Author(s)
      Sasaki K
    • Journal Title

      Eur J Hum Genet 15

      Pages: 1205-1210

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Duplication of the paternal IGF2 allele in trisomy 11 and elevated expression levels of IGF2 mRNA in congenital mesoblastic nephroma of the cellular or mixed type2007

    • Author(s)
      Watanabe N
    • Journal Title

      Genes, Chromosomes and Cancer 46

      Pages: 929-935

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Role of DNA methylation and histone H3 Lysine 27 methylation in tissue-specific imprinting of mouse Grb102007

    • Author(s)
      Yamasaki-Ishizaki Y
    • Journal Title

      Mol Cell Biol 27

      Pages: 732-742

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] 特集エピジェネティクスの最新テクノロジーヒストン修飾の個別およびゲノム網羅的解析法〜ChIP法とChIP on chip法2007

    • Author(s)
      副島 英伸
    • Journal Title

      バイオテクノロジージャーナル 7

      Pages: 433-439

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Leading-edge technology for epigenetics-site specific and genome wide analysis of the histone modification-ChIP and ChIP on chip(in Japanese)2007

    • Author(s)
      Soejima, H
    • Journal Title

      Biotechnology Journal 7(4)

      Pages: 433-439

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Japanese and North American/European patients with Beckwith-Wiedemann syndrome have different frequencies of some epigenetic and genetic alterations.2007

    • Author(s)
      Sasaki, K, Soejima, H, Higashimoto, K, Yatsuki, H, Ohashi, H, Yakabe, S, Joh, K, Niikawa, N, Mukai, T
    • Journal Title

      Eur JHum Genet 15(12)

      Pages: 1205-10

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Duplication of the paternal IGF2 allele in trisomy 11 and elevated expression levels of IGF2 mRNA in congenital mesoblastic nephroma of the cellular or mixed type2007

    • Author(s)
      Watanabe, N, Haruta, M, Soejima, H, Fukushi, D, Yokomori, K, Nakadate, H, Okita, H, Hata, J, Fukuzawa, M, Kaneko, Y
    • Journal Title

      Genes, Chromosomes and Cancer 46(10)

      Pages: 929-935

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Role of DNA methylation and histone H3 Lysine 27 methylation in tissue-specific imprinting of mouse Grb 10.2007

    • Author(s)
      Yamasaki-Ishizaki, Y, Kayashima, T, Mapendano, CK, Soejima, H, Ohta, T, Masuzaki, H, Kinoshita, A, Urano, T, Yoshiura, KI, Matsumoto, N, Ishimaru, T, Mukai, T, Niikawa, N, Kishino, T
    • Journal Title

      Mol Cell Biol 27(2)

      Pages: 732-742

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Japanese and North American/European patients with Beckwith-Wiedemann syndrome have different frequencies of some epigenetic and geneticalterations2007

    • Author(s)
      Sasaki K
    • Journal Title

      Eur J Hum Genet 15

      Pages: 1205-1210

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Role of DNA methylation and histone H3 Lysine 27 methylation in tissue-specific imprinting of mouse Grb102007

    • Author(s)
      Yamasaki・Ishizaki Y
    • Journal Title

      Mol Cell Biol 27

      Pages: 732-742

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 特集エピジェネティクスの最新テクノロジー ヒストン修飾の個別およびゲノム網羅的解析法-ChIP法とChIP on chip法2007

    • Author(s)
      副島 英伸
    • Journal Title

      バイオテクノロジージャーナル 7

      Pages: 433-439

    • Related Report
      2007 Annual Research Report
  • [Journal Article] A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 11q:Comparison with chromosome 21q2006

    • Author(s)
      Yamada Y
    • Journal Title

      DNA Sequence 17

      Pages: 300-306

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Association of 11q loss,trisomy 12 and possible 16q loss with loss of imprinting of insulin-like growth factor-II in Wilms tumor2006

    • Author(s)
      Watanabe N
    • Journal Title

      Gene Chromosome Cancer 45

      Pages: 592-601

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Genetic and epigenetic alterations on the short arm of chromosome 11 are involved in a majority of sporadic Wilms' tumors2006

    • Author(s)
      Satoh Y
    • Journal Title

      Brit J Cancer 95

      Pages: 541-547

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Expression profile of LIT1/KCNQ10T1 and epigenetic status at the KvDMR1 in colorectal cancers2006

    • Author(s)
      Nakano S
    • Journal Title

      Cancer Science 97

      Pages: 1147-1154

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 11q : Comparison with chromosome 21q.2006

    • Author(s)
      Yamada, Y, Shirakawa, T, Taylor, Td, Okamura, K, Soejima, H, Uchiyama, M., Iwasaka, T, Mukai, T, Muramoto, Ki, Sakaki, Y, Ito, T
    • Journal Title

      DNA Sequence 17(4)

      Pages: 300-306

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Association of 11q loss, trisomy 12 and possible 16q loss with loss of imprinting of insulin-like growth factor-II in Wilms tumor.2006

    • Author(s)
      Watanabe, N, Nakadate, H, Haruta, M, Sugawara, W, Sasaki, F, Tsunematsu, Y, Kikuta, A, Fukuzawa, M, Okita, H, Hata, Ji, Soejima, H, Kaneko, Y
    • Journal Title

      Gene Chromosome Cancer 45(6)

      Pages: 592-601

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Genetic and epigenetic alterations on the short arm of chromosome 11 are involved in a majority of sporadic Wilms' tumors2006

    • Author(s)
      Satoh, Y, Nakadate, H, Nakagawachi, T, Higashimoto, K, Joh, K, Masaki, Z, Uozumi, J, Kaneko, Y, Mukai, T, Soejima, H
    • Journal Title

      Brit J Cancer 95(4)

      Pages: 541-547

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Expression profile of LIT1/KCNQ1OT1 and epigenetic status at the KvDMR1 in colorectal cancers.2006

    • Author(s)
      Nakano, S, Murakami, K, Meguro, M, Soejima, H, Higashimoto, K, Urano, T, Kugoh, H, Mukai, T, Ikeguchi, M., Oshimura, M
    • Journal Title

      Cancer Science 97(11)

      Pages: 1147-1154

    • NAID

      10019376824

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] 4 Imprinting related diseases, Chapter 5 Epigenetics and diseases, Genome Wide Development of Epigenetic Medical Science.(in Japanese)2006

    • Author(s)
      Soejima, H, Ohta, T, Mukai, T
    • Journal Title

      (M, Nakao, K, Shiota, T, Ushijima, Sasaki H ed.)(Yodo-sha, Tokyo, Experimental Medicine) 24(8)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Comparative analyses of genomic imprinting and CpG island-methylation in mouse Murrl and human MURR1 loci revealed a putative imprinting control region in mice2006

    • Author(s)
      Zhang Z
    • Journal Title

      Gene 366・1

      Pages: 77-86

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Imprinting disruption of the KIP2/LIT1 domain : the molecular mechanism causing Beckwith-Wiedemann syndrome and cancer2006

    • Author(s)
      Higashimoto K
    • Journal Title

      Cytogenet Genome Res 113・1-4

      Pages: 306-312

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Association of 11q loss, trisomy 12 and possible 16q loss with loss of imprinting of insulin-like growth factor-II in Wilms tumor2006

    • Author(s)
      Watanabe N
    • Journal Title

      Gene Chromosome Cancer 45・6

      Pages: 592-601

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Genetic and epigenetic alterations on the short arm of chromosome 11 are involved in a majority of sporadic Wilms' tumors2006

    • Author(s)
      Satoh Y
    • Journal Title

      Brit J Cancer 95・4

      Pages: 541-547

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Expression profile of LIT1/KCNQ1OT1 and epigenetic status at the KvDMR1 in colorectal cancers2006

    • Author(s)
      Nakano S
    • Journal Title

      Cancer Science 97・11

      Pages: 1147-1154

    • Related Report
      2006 Annual Research Report
  • [Journal Article] A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 11q : Comparison with chromosome 21q2006

    • Author(s)
      Yamada Y
    • Journal Title

      DNA Sequence 17・4

      Pages: 300-306

    • Related Report
      2006 Annual Research Report
  • [Presentation] マウスMurr1/U2af1-rs1領域のゲノムインプリンティング制御機構2007

    • Author(s)
      八木 ひとみ
    • Organizer
      第1回日本エピジェネティクス研究会年会
    • Place of Presentation
      大阪
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] SNPアレイとH19-DMR CTCF6のメチル化分析により明らかにされたWT1異常型Wilms腫瘍の遺伝学的,臨床的不均一性2007

    • Author(s)
      金子 安比古
    • Organizer
      日本人類遺伝学会第52回大会
    • Place of Presentation
      東京
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 母由来重複に起因する11p15部分トリソミーの1例2007

    • Author(s)
      霜川 修
    • Organizer
      日本人類遺伝学会第52回大会
    • Place of Presentation
      東京
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
  • [Presentation] What molecular mechanism contributes to the different incidence rates between Japanese and Caucasian Wilms tumors2007

    • Author(s)
      春田 雅之
    • Organizer
      第66回日本癌学会学術総会
    • Place of Presentation
      横浜
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Regulation mechanism of mouse Murrl/U2afl-rsl imprinted region.2007

    • Author(s)
      Yatsuki, H., Joh, K., Soejima, H., Mukai, T
    • Organizer
      1st Annual Meeting of the Japanese Society for Epigenetics
    • Place of Presentation
      Osaka
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] SNP array analysis and H19-DMR CTCF6 methylation analysis revealed genetic and clinical heterogeneity of Wilms tumors with WT1 aberration2007

    • Author(s)
      Kaneko, Y., Haruta, M., Arai, Y., Soejima, H., Watanabe, N., Fukuzawa, M
    • Organizer
      The 52nd Annual Meeting of the Japanese Society of Human Genetics
    • Place of Presentation
      Tokyo
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] A case with partial trisomy of 11p15 transmitted from mother2007

    • Author(s)
      Shimokawa, O., Fu, R., Soejima, H., Sasaki, K., Kondo, T., Matsumoto, N., Yoshiura, K., Niikawa, N., Harada, N
    • Organizer
      The 52nd Annual Meeting of the Japanese Society of Human Genetics
    • Place of Presentation
      Tokyo
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] What molecular mechanism contributes to the different incidence rates between Japanese and Caucasian Wilms tumors?2007

    • Author(s)
      Haruta, M., Watanabe, N., Nakadate, N., Fukuzwa, M., Soejima, H., Kaneko, Y
    • Organizer
      66th Annual Meeting of the Japanese Cancer Association
    • Place of Presentation
      Yokohama
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] What molecular mechanism contributes to the different incidence rates between Japanese and Caucasian Wilms tumors?2007

    • Author(s)
      春田 雅之
    • Organizer
      第66回日本癌学会学術総会
    • Place of Presentation
      横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] SNPアレイとH19-DMR CTCF6のメチル化分析により明らかにされたWT1異常型Wilms腫瘍の遺伝学的, 臨床的不均一性2007

    • Author(s)
      金子 安比古
    • Organizer
      日本人類遺伝学会第52回大会
    • Place of Presentation
      東京
    • Related Report
      2007 Annual Research Report
  • [Presentation] NSD1異常を伴うSotos症候群における11p15.5ゲノムインプリンティング領域の解析2007

    • Author(s)
      近藤 雅人
    • Organizer
      日本人類遺伝学会第52回大会
    • Place of Presentation
      東京
    • Related Report
      2007 Annual Research Report
  • [Presentation] Different incidence of epigenetic and genetic alterations between Japanese and Caucasian patients with Beckwith-Wiedemann syndrome2006

    • Author(s)
      Soejima H
    • Organizer
      11th International Congress of Human Genetics
    • Place of Presentation
      Brisbane,Australia
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Wilms腫瘍におけるIGF2のloss of imprinting(LOI)とWT1構造異常2006

    • Author(s)
      春田 雅之
    • Organizer
      第65回日本癌学会学術総会
    • Place of Presentation
      横浜
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Bgckwith-Wiedemann症候群本邦例の包括的解析2006

    • Author(s)
      副島 英伸
    • Organizer
      日本人類遺伝学会第51回大会
    • Place of Presentation
      米子
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 大腸がんにおける刷り込み遺伝子LIT1/KCNQ10T1の発現状態とKvDMR1のエピジェネティクス2006

    • Author(s)
      中野 星児
    • Organizer
      日本人類遺伝学会第51回大会
    • Place of Presentation
      米子
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Different incidence of some epigenetic and genetic alterations between Japanese and Caucasian patients with Beckwith-Wiedemann syndrome2006

    • Author(s)
      Soejima H
    • Organizer
      International Genomic Imprinting Workshop 2006
    • Place of Presentation
      Tokyo,Japan
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] U2af1-rs1/Murr1 loci are newly impdnted loci fbimed in mouse after the divergence between human and mouse2006

    • Author(s)
      Joh K
    • Organizer
      International Genomic Imprinting Workshop 2006
    • Place of Presentation
      Tokyo,Japan
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Different incidence of epigenetic and genetic alterations between Japanese and Caucasian patients with Beckwith-Wiedemann syndrome.2006

    • Author(s)
      Soejima, H, Sasaki, K, Higashimoto, K, Joh, K, Niikawa N, Mukai, T
    • Organizer
      11th International Congress of Human Genetics
    • Place of Presentation
      Brisbane, Australia
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Loss of imprinting(LOI) of IGF2 and structural aberration of WT1 in Wilms tumors2006

    • Author(s)
      Haruta, M, Nakadate, N, Watanabe, N, Fukuzawa, M, Soejima, H, Kaneko, Y
    • Organizer
      65th Annual Meeting of the Japanese Cancer Association
    • Place of Presentation
      Yokohama
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Comprehensive analyses of Japanese patients with Beckwith-Wiedemann syndrome.2006

    • Author(s)
      Soejima, H, Sasaki, K, Higashimoto, K, Niikawa, N, Mukai, T
    • Organizer
      The 51st Annual Meeting of the Japanese Society of Human Genetics
    • Place of Presentation
      Yonago
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Expression of imprinted LI1/KCNQlOTl gene and Epigenetics of KvDMR12006

    • Author(s)
      Nakano, S, Murakami, K, Meguro, M., Soejima, H., Higashimoto, K., Urano, T., Kugoh, H., Mukai, T., Ikeguchi, M., Oshimura, M
    • Organizer
      The 51st Annual Meeting of the Japanese Society of Human Genetics
    • Place of Presentation
      Yonago
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Different incidence of some epigenetic and genetic alterations between Japanese and Caucasian patients with Beckwith- Wiedemann syndrome2006

    • Author(s)
      Soejima, H., Sasaki, K., Higashimoto, K., Yatsuki, H., Joh, K., Niikawa, N., Mukai, T
    • Organizer
      International Genomic Imprinting Workshop 2006
    • Place of Presentation
      Tokyo, Japan
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] U2afl-rsl/Murr1 loci are newly imprinted loci formed in mouse after the divergence between human and mouse.2006

    • Author(s)
      Joh, K., Wang, Y., Zhang, Z., Yatsuki, H., Soejima, H., Mukai, T
    • Organizer
      International Genomic Imprinting Workshop 2006
    • Place of Presentation
      Tokyo, Japan
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] 実験医学増刊ゲノムワイドに展開するエピジェネティクス医科学中尾 光善、塩田 邦郎、牛島 俊和、佐々木 裕之編集2006

    • Author(s)
      副島 英伸
    • Publisher
      羊土社
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] 実験医学増刊ゲノムワイドに展開するエピゲネティクス医科学 中尾光善, 塩田邦郎, 牛島俊和, 佐々木裕之編集2006

    • Author(s)
      副島英伸
    • Publisher
      羊土社
    • Related Report
      2006 Annual Research Report
  • [Remarks]

    • URL

      http://www.biomol.med.saga-u.ac.jp/mbg/index.htm

    • Related Report
      2007 Annual Research Report

URL: 

Published: 2006-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi