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A study on a mechanism for the transcriptional regulation of an epsilon-toxin gene by a novel type of bent DNA

Research Project

Project/Area Number 18590428
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Bacteriology (including Mycology)
Research InstitutionKagawa University

Principal Investigator

OKABE Akinobu  Kagawa University, Faculty of Medicine, Department of Microbiology, Professor (20093677)

Co-Investigator(Kenkyū-buntansha) MIYATA Shigeru  Kagawa University, Faculty of Medicine, Department of Microbiology, Associated professor (90314913)
NARIYA Hirofumi  Kagawa University, Faculty of Medicine, Molecular Microbiology, Assistant professor (30452668)
MATSUSHITA Osamu  Kitasato University School of Medicine, Department of Microbiology & Parasitology, Professor (00209537)
TAMAI Eigi  Matsuyama University, Department of Infectious Diseases, College of Pharmaceutical Sciences, Assistant Professor (40333512)
Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,860,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥360,000)
Fiscal Year 2007: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2006: ¥2,300,000 (Direct Cost: ¥2,300,000)
KeywordsClostridium perfringens / Epsilon-Toxin / Bent DNA / Transcriptional factor / Gene expression / LrpC / イブシロン毒素 / ウエルシュ菌
Research Abstract

An epsilon-toxin gene of Clostridium perfringens has bent DNA in a promoter region. It has been shown to possess another weakly-bent DNA in the coding region, which regulates epsilon-toxin gene expression along with the upstream bent DNA. When a DNA fragment coveting the two bent DNA regions were PCR amplified and cloned into an E coli plasmid, A-tract consisting of 8 adenine residues located at the downstream bent DNA lost the 8th adenine. This suggests that cloning of the fragment causes plasmid instability. We constructed plasmids expressing C. perfringens LrpC with and without His' by using our plasmid vector pFF. Unfortunately, transformats of C. perfringens strains 13 and SM101 carrying these plasmids failed to produce large amounts of recombinant LrpC proteins. Therefore, we failed to purify LrpC from these cultures. One likely reason for the difficulty of purification is possible proteolytic breakdown of the recombinant product during purification. We constructed a clostripain- … More like protease-deficient mutant, since this is the most potent thiol-protease among proteases produced by the organism and probably decreases the yield of LrpC products. We are currently attempting to purify LrpC by using this mutant To assess whether or not his-tagged LrpC functions normally, we examined biological properties of both transformants carrying plasmids containing LrpC and LrpC-his genes. The result indicates LrpC and LrpC-his are involved in the onset of spore-formation, as demonstrated for Bacillus subtilis, proving that LrpC-his is fractional in C perfringens. We prepared cell lysate from Strain 13 with and without a plasmid containing the LrpC gene and also PCR-products corresponding to the fragment containing the two bent DNA regions of the epsilon-toxin gene. The gel retardation assay using these did not show the specific interaction between the DNA and LrpC probably because of impurity of protein samples or the presence of LrpC in the wild type as well as in the transformant. To solve theseproblems, we are currently purifying LrpC-his by using Ni-chelating Sepharose from large-scale culture of the C. perfringens transformant We have also attempted an alternative method involving an E coli expression system as reported for purification of B. subtilis LrpC. Since we constructed a LrpC gene-disrupted mutant, we have undertaken the gel retardation assay by using lysates from a wild-type strain and its isogenic LrpC(-)mntant. Less

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (5 results)

All 2008 2007 Other

All Journal Article (4 results) (of which Peer Reviewed: 1 results) Book (1 results)

  • [Journal Article] Construction and characterization of a clostripain-like protease-deficient mutant of Clostridium perfringens as a strain for clostridial gene expression2008

    • Author(s)
      Tanaka H, Tamai E, Miyata S, Taniguchi Y, Nariya H, Hatano N, Houchi H, Okabe A.
    • Journal Title

      Applied Microbiology and Biotechnology 77

      Pages: 1063-1071

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] ウエルシュ菌のプロテアーゼ・ノックアウト株の構築と利用について2007

    • Author(s)
      岡部 昭延, 田中 裕章, 宮田 茂, 玉井 栄治
    • Journal Title

      乳酸菌研究会に関する報告書 18年度版

      Pages: 437-443

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
  • [Journal Article] Construction of a clostripain-like protease mutant and its application2007

    • Author(s)
      Okabe, A., Tanaka, H., Miyata, S., Tamai, E
    • Journal Title

      Annual Report of Studies on Lactic Acid Bacteria

      Pages: 437-443

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Construction and characterization of a clostripain-like protease-deficient mutant of Clostridium perfringens as a strain for clostridial gene expression

    • Author(s)
      Tanaka, H., Tamai, E., Miyata, S., Taniguchi, Y., Nariya, H., Hatano, N., Houchi H, Okabe, A
    • Journal Title

      Applied Microbiology and Biotechnology 77(5)

      Pages: 1063-1071

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] 最新細菌・カビ・酵母図鑑2007

    • Author(s)
      岡部 昭延
    • Total Pages
      228
    • Publisher
      技術情報協会
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary

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Published: 2006-04-01   Modified: 2016-04-21  

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