• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Accurate measurement of the interaction of serum proteins with low-molecular weight compounds by micro-scale frontal gel chromatogrphy

Research Project

Project/Area Number 18590528
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Laboratory medicine
Research InstitutionShiga University of Medical Science

Principal Investigator

ISHIDA Tetsuo  Shiga University of Medical Science, Dept. of Biochem and Mol Biol, Assistant Professor (10176191)

Co-Investigator(Kenkyū-buntansha) TANAKA Hiroyuki  Shiga Univ of Med Sci, Dept of Bicchem. and Mol Biol, Assistant Professor (10293820)
Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,890,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥390,000)
Fiscal Year 2007: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2006: ¥2,200,000 (Direct Cost: ¥2,200,000)
Keywordsprotein / serum / binding curve / clinical chemistry / gel filtration / serum albumin / analytical chemistry / frontal analysis / 低分子リガンド / 嫌気測定 / 機能解析
Research Abstract

The present study aimed to develop a method to measure accurately the interaction between a protein and low-molecular weight compounds using 50-100 μL, of samples. We reevaluated frontal gel chromatography (FGC), an established method to directly measure the free ligand concentration of a protein-ligand mixture, to may out FGC using micro and/or capillary columns packed with porous gels. Modifying ordinary HPLC systems to meet the experimental conditions needed for the micro-scale FGC (mFGC), we have succeeded in obtaining binding data using small amounts of samples. mFGC opens the way to measure the binding function of scrum proteins. To examine whether the binding parameters of serum proteins for marker hennas are useful far diagnosis and personalized. Therapy of diseases such as diabetes mellitus we are now developing a system to carry out mFGC automatically. The following is a list attire main results.
1. Establishment of 50-100 μL sacle mFGC
High performance gel filtration columns with 0.5-1.0 mm internal diameter and 7.5-10 cm length were used. High accuracy of the flow rate and strictly constant pressure were required for pumps. To use ordinary UV-Vis HPLC monitor, the abate was 10-fold diluted before entering the monitor. All of the dead spaces of connecting labs, and valves were minimized to prevent the broadening of the solvent-simple boundaries.
2. Theory of mFGC
We made a mFGC model based on the actual structure of the gel filtration column and developed a computer program for strict simulation.
3. Building of the binding data base of human serum albumin
Using mFGC, we are now measuring the binding curves of human serum albumin for marker compounds, the crystal structures of whirl complex with albumin have been determined.
4. Measurement oldie binding curves of rot serum albumin purified from 100 μL of individual rat serum.

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (25 results)

All 2008 2007 2006

All Journal Article (12 results) (of which Peer Reviewed: 6 results) Presentation (13 results)

  • [Journal Article] D-Serine dehydratase from chicken kidney: a vertebral homologue of the cryptic enzyme from Burkholderia cepacia2008

    • Author(s)
      Tanaka H.
    • Journal Title

      J. Biochem. 143

      Pages: 49-57

    • NAID

      10024907433

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] D-Serine dehydratase from chicken kidney : a vertebral homologue of the cryptic enzyme from Burkholderia cepacia2008

    • Author(s)
      Tanaka, H
    • Journal Title

      J. Biochem 143

      Pages: 49-57

    • NAID

      10024907433

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] D-Serine dehydratase from chicken kidney: a vertebral homologue of the cryptic enzyme from Burkholderia cepacia2008

    • Author(s)
      Tanaka H.
    • Journal Title

      J.Biochem 143

      Pages: 49-57

    • NAID

      10024907433

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular mechanism of the redox-dependent interaction between NAD H-dependent ferredoxin reductase and Rieske-type[2Fe-2S]ferredoxin2007

    • Author(s)
      Senda M.
    • Journal Title

      J. Mol Biol. 373

      Pages: 382-400

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Functional and structural characterization of D-aspartate oxidase from porcine kidney: Non-Michaelis kinetics due to substrate activation2007

    • Author(s)
      Yamamoto A.
    • Journal Title

      J. Biochem. 141

      Pages: 363-376

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Simultaneous measurement of D-serine dehydratase and D-amino acid oxidase activities by the detection of 2-oxo-acid formation with reverse-phase high-performance liquid chromatography2007

    • Author(s)
      Tanaka H.
    • Journal Title

      Anal. Biochem. 362

      Pages: 83-88

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Molecular mechanism of the redox-dependent interaction between NADH-dependent ferredoxin reductase and Rieske-type[2Fe-2S] ferredoxin2007

    • Author(s)
      Senda, M
    • Journal Title

      J. Mol. Biol 373

      Pages: 382-400

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Functional and structural characterization of D-aspartate oxidase from porcine kidney : Non-Michaelis kinetics due to substrate activation2007

    • Author(s)
      Yamamoto, A
    • Journal Title

      J. Biochem 141

      Pages: 363-376

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Simultaneous measurement of D-serine dehydratase and Damino acid oxidase activities by the detection of 2-oxo-acid formation with reverse-phase high-performance liquid chromatography2007

    • Author(s)
      Tanaka, H
    • Journal Title

      Anal. Biochem 362

      Pages: 83-88

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Molecular mechanism of the redox-dependent interaction between NADH-dependent ferredoxin reductase and Rieske-type [2Fe-2S] ferredoxinSenda M.2007

    • Author(s)
      Senda M.
    • Journal Title

      J. Mol Biol. 373

      Pages: 382-400

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Simultaneous measurement of D-serine dehydratase and D-amino acid oxidase activities by the detection of 2-oxo-acid formation with reverse-phase high-performance liquid chromatography.2007

    • Author(s)
      Tanaka H., Yamamoto A., Ishida T., Horiike K.
    • Journal Title

      Anal. Biochem. 362

      Pages: 83-88

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Functional and structural characterization of D-aspartate oxidase from porcine kidney : non-Michaelis kinetics due to substrate activation.2007

    • Author(s)
      Yamamoto A., Tanaka H., Ishida T., Horiike K.
    • Journal Title

      J. Biochem. 141

      Pages: 363-376

    • NAID

      10020100678

    • Related Report
      2006 Annual Research Report
  • [Presentation] タンパク質-リガンド相互作用の定量的解析2007

    • Author(s)
      石田哲夫
    • Organizer
      日本生化学会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-13
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] タンパク賢リガンド相互作用の定量的解析2007

    • Author(s)
      石田 哲夫
    • Organizer
      日本生化学会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-13
    • Related Report
      2007 Annual Research Report
  • [Presentation] Quanutative analysis of proten-Iigand Interaction2007

    • Author(s)
      Ishida, T
    • Organizer
      80annul meeting or tne Japanese Biochemical Society
    • Place of Presentation
      Pacifico Yokohama
    • Year and Date
      2007-12-12
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] ブタD-アスパラギン酸オキシダーゼの反応機構2007

    • Author(s)
      山本篤
    • Organizer
      日本生化学会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-11
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] ニワトリ腎臓由来のD-セリンデヒドラターゼの精製と性状解析2007

    • Author(s)
      田中裕之
    • Organizer
      日本生化学会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-11
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Reaction mechanism of porcine D-asapartate oxidase2007

    • Author(s)
      Yamamoto, A
    • Organizer
      80th annual meeting of the Japanese Biochemical Society
    • Place of Presentation
      Pacifico Yokohama
    • Year and Date
      2007-12-11
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Purification and characterization of chicken kidney D-serine dehydratase2007

    • Author(s)
      Tanaka, H
    • Organizer
      80th annual meeting of the Japanese Biochemical Society
    • Place of Presentation
      Pacifico Yokohama
    • Year and Date
      2007-12-11
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 非ヘム2価鉄イオン依存性酸素添加酵素の反応機構2007

    • Author(s)
      堀池喜八郎
    • Organizer
      日本農芸化学会薮田セミナー
    • Place of Presentation
      京都大学
    • Year and Date
      2007-09-10
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Reaction mechanism of non-Heme iron dependent oxygenases2007

    • Author(s)
      Horiike, K
    • Organizer
      Japanese Agricultural Chemistry Society Yabuta seminar
    • Place of Presentation
      Kyoto University
    • Year and Date
      2007-09-10
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] ミクロフロンタルゲルろ過によるタンパク質-リガンド相互作用の解析2007

    • Author(s)
      石田哲夫
    • Organizer
      第6回国際バイオフォーラム
    • Place of Presentation
      東京ビッグサイト
    • Year and Date
      2007-06-21
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Analysis of protein-ligand interaction by micro-sacle frontal gel Chromatography2007

    • Author(s)
      Ishida, T
    • Organizer
      6th International Bio-forum
    • Place of Presentation
      Tokyo Big Site
    • Year and Date
      2007-06-21
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Molecular mechanism of substrate specificity of catechol 2,3-dioxygenase2006

    • Author(s)
      石田哲夫
    • Organizer
      日本生化学会
    • Place of Presentation
      京都国際会議場
    • Year and Date
      2006-06-19
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Molecular mechanism of substrate specificity of catechol 2,3-dioxygenase2006

    • Author(s)
      Ishida, T
    • Organizer
      79th annual meeting of the Japanese Biochemical Society
    • Place of Presentation
      Kyoto International Conference Hall
    • Year and Date
      2006-06-19
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary

URL: 

Published: 2006-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi