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藍藻ホスホリブロキナーゼのX線構造解析による反応機構と活性制御機構の解明

Research Project

Project/Area Number 18770087
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Structural biochemistry
Research InstitutionOsaka University

Principal Investigator

松村 浩由  Osaka University, 大学院・工学研究科, 助教 (30324809)

Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,400,000 (Direct Cost: ¥3,400,000)
Fiscal Year 2007: ¥1,200,000 (Direct Cost: ¥1,200,000)
Fiscal Year 2006: ¥2,200,000 (Direct Cost: ¥2,200,000)
Keywords藍藻 / ホスホリブロキナーゼ / X線構造解析 / 反応磯構 / 活性制御機構 / 反応機構
Research Abstract

本研究は,藍藻ボスホリブロキナーゼ(PRK)の反応機構ならびに活性調節機構をX線構造解析によって解明することを目的とし,以下の実験を行った。
藍藻Synecococcus由来PRKの大量培養・精製系を構築した。精製手順は、藍藻PRKを大量に生産した大腸菌を破砕し,硫安分画,Niアフィニティークロマトグラフィー、ゲル濾過クロマトグラフィーで精製を行った。その後、動的溶液光散乱法装置(DLS)を用いて,溶液状態でのサンプルの結晶化能を確認した。続いて、His-tagドメインを有した酵素を用いて、結晶化を行った。恒温インキュベータ(20℃と4℃)で、種々の結晶化条件の検討を行ったところ、PEG3350を沈殿剤として用いた条件で、0.2x0.2x0.2mm程度のX線回折実験に適した大きさの単結晶を作成することに初めて成功した。しかし、大型放射光施設Spring-8にてX線回折実験を行ったところ回折能3.8Å程度と、構造解析には不十分であった。次に,ThrombinによってHis-tagドメインを切断し、さらに、PRKの本体をゲル濾過クロマトグラフィーにより精製した。その後、結晶化を行ったところ,0.05mm程度の単結晶を作成することに成功したが、大きさが不十分であり、構造解析可能な回折データが得られなかった。次に、PRKの活性調節因子であるCP12タンパク1質の精製系の構築にとりくんだ。PRKとCP12の結合をpull-downassayにて確認したが、結晶が得られなかった。続いて、CP12タンパク質のPRK結合ペプチドを合成し、PRKとCP12の結合をpull-down assayにて確認し、その後結晶化を行ったところ、0.05mm程度の単結晶を作成することができた。現在、結晶の改善を目指し、PRKとCP12ペプチド複合体の結晶化を行っている。

Report

(2 results)
  • 2007 Annual Research Report
  • 2006 Annual Research Report
  • Research Products

    (26 results)

All 2008 2007 2006 Other

All Journal Article (16 results) (of which Peer Reviewed: 11 results) Presentation (7 results) Book (3 results)

  • [Journal Article] Crystal structure of 5-methylthioribose l-phosphate isomerase product complex from Bacillus subtilis: Implications for catalytic mechanism.2008

    • Author(s)
      H. Tamura, et. al.
    • Journal Title

      Protein Science 17巻

      Pages: 126-135

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for the decarboxylation of orotidine 5'-monophosphate (OMP) by Plasmodium falciparum OMP decarboxylase.2008

    • Author(s)
      K. Tokuoka, et. al.
    • Journal Title

      The Journal of Biochemistry 143巻

      Pages: 69-78

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Novel cation-pi interaction revealed by crystal structure of thermoalk alophilic lipase.2008

    • Author(s)
      H. Matsumura, et. al.
    • Journal Title

      PROTEINS: Structure, Function, and Bioinformatics 70巻

      Pages: 592-598

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural, Thermodynamic, and Mutational Analyses of a Psychrotrophic RNase HI.2007

    • Author(s)
      T. Tadokoro, et . al.
    • Journal Title

      Biochemistry 46巻

      Pages: 7460-7468

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Conformational Contagion in a Protein: Structural Properties of a Chameleon Sequence.2007

    • Author(s)
      K. Takano, et. al.
    • Journal Title

      PROTEINS: Structure, Functure, Function, and Bioinformatics 68巻

      Pages: 617-625

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Enzymatic Characterization of 5-Methylthioribose l-Phosphate Isomerase from Bacillus subtilis.2007

    • Author(s)
      Y. Saito, et. al.
    • Journal Title

      Biosci. Biotechnol. Biochem. 71巻

      Pages: 2021-2028

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Four New Crystal Structures of Tk-subtilisin in Unautoprocessed, Autop rocessed and Mature Forms: Insight into Structural Changes during Maturation.2007

    • Author(s)
      S. Tanaka, et. al.
    • Journal Title

      Journal of Molecular Biology 372巻

      Pages: 1055-1069

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Preparation, crystallization and preliminary crystallographic analysis of old yellow enzyme from Trypanosoma cruzi.2007

    • Author(s)
      S. Sugiyama, et. al.
    • Journal Title

      Acta Crystallographica Section F 63巻

      Pages: 896-898

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation.2007

    • Author(s)
      C. Angkawidjaja, et. al.
    • Journal Title

      FEBS Letters 581巻

      Pages: 5060-5064

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Requirement of Left-handed Glycine Residue for High Stability of the Tk-subtilisin Propeptide as Revealed by Mutational and Crystallographic Analyses.2007

    • Author(s)
      M. Pulido, et. al.
    • Journal Title

      Journal of Molecular Biology 374巻

      Pages: 1359-1373

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary X-ray diffraction study of glycerol kinase from the hyperthermophilic archaeon Thermococcus kodakaraensis2007

    • Author(s)
      R.Katsumi, Y.Koga, D.-J.You, H.Matsumura, K.Takano, S.Kanaya
    • Journal Title

      Acta Crystallographica Section F 63巻2号

      Pages: 126-129

    • Related Report
      2006 Annual Research Report
  • [Journal Article] A novel mechanism of allosteric regulation of archaeal phosphoenolpyruvate carboxylase : a combined approach to structure-based alignment and model assessment2006

    • Author(s)
      Hiroyoshi Matsurmura, Katsura Izui, Kenji Mizuguchi
    • Journal Title

      Protein engineering design & selection 19巻9号

      Pages: 409-419

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Application of Femtosecond Laser Ablation for Detaching Grown Protein Crystals from a Glass Capillary Tube2006

    • Author(s)
      M.Kashii, R.Fujisawa, H.Adachi, Y.Mori, T.Sasaki, Y.Koga, K.Takano, S.Kanaya, H.Matsumura, T.Inoue, S.Murakami, K.Sugamoto, H.Yoshikawa
    • Journal Title

      Journal of Bioscience and Bioengineering 102巻4号

      Pages: 372-374

    • NAID

      110004839458

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Effect of ultrasonic irradiation on protein crystallization2006

    • Author(s)
      K.Kakinouchi, H.Adachi, H.Matsumura, T.Inoue, S.Murakami, Y.Mori, Y.Koga, K.Takano, S.Kanaya
    • Journal Title

      Journal of Crystal Growth 292巻2号

      Pages: 437-440

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Cooling-rate screening system for determining protein crystal growth conditions2006

    • Author(s)
      R.Murai, S.Nakata, M.Kashii, H.Adachi, A.Niino, K.Takano, H.Matsumura, S.Murakami, T.Inoue, Y.Mori, T.Sasaki
    • Journal Title

      Journal of Crystal Growth 292巻2号

      Pages: 433-436

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Novel cation-pi interaction revealed by crystal structure of thermoalk alophilic lipase.

    • Author(s)
      M. Pulido, et. al.
    • Journal Title

      Journal of Molecular Biology in press

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Presentation] pH-dependent regulation revealed by X-ray structure of phosphoenolpyru vate carboxylase from maize.2007

    • Author(s)
      Hiroyoshi Matsumura
    • Organizer
      14th International Congress on Photosynthesis (PS07 Glasgow)
    • Place of Presentation
      Glasgow(UK)
    • Related Report
      2007 Annual Research Report
  • [Presentation] Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis: Implications for catalytic Mechanism.2007

    • Author(s)
      Haruka Tamura
    • Organizer
      The 8th Conference of the Asian Crystallographic Association, AsCA' 07
    • Place of Presentation
      Taipei (TAIWAN)
    • Related Report
      2007 Annual Research Report
  • [Presentation] STRUCTURAL DIFFERENCE BETWEEN RICE AND RED ALGA RUBISCO COMPLEXED WITH SULFATE.2007

    • Author(s)
      Yasuhiro Komura
    • Organizer
      The 8th Conference of the Asian Crystallographic Association, AsCA' 07
    • Place of Presentation
      Taipei (TAIWAN)
    • Related Report
      2007 Annual Research Report
  • [Presentation] メチオニン回収経路で機能する枯草菌由来RLPのX線結晶構造解析2007

    • Author(s)
      田村はるか
    • Organizer
      日本結晶学会2007年度年会および総会
    • Place of Presentation
      東京
    • Related Report
      2007 Annual Research Report
  • [Presentation] イネ由来RuBisCOと紅藻由来RuBisCOの硫酸イオン複合体に見られた立体構造の違い2007

    • Author(s)
      小村泰浩
    • Organizer
      日本結晶学会2007年度年会および総会
    • Place of Presentation
      東京
    • Related Report
      2007 Annual Research Report
  • [Presentation] 藍藻ホスホリプロキナーゼの基質類似物結合型、CP12結合型のX線解析を自指した結晶化2007

    • Author(s)
      前田貴行
    • Organizer
      日本結晶学会2007年度年会および総会
    • Place of Presentation
      東京
    • Related Report
      2007 Annual Research Report
  • [Presentation] 二酸化炭素固定酵素のX線構造解析による構造-機能相関の解明2007

    • Author(s)
      松村浩由
    • Organizer
      日本結晶学会2007年度年会および総会
    • Place of Presentation
      東京
    • Related Report
      2007 Annual Research Report
  • [Book] Structural Biology of Membrane Proteins2006

    • Author(s)
      Fabien Walas, Hiroyoshi Matsumura, Ben Luisi
    • Total Pages
      24
    • Publisher
      Royal Society of Chemistry (RSC)
    • Related Report
      2006 Annual Research Report
  • [Book] 第5版 実験化学講座 5 化学実験のための基礎技術2006

    • Author(s)
      井上 豪, 松村浩由, 甲斐 泰
    • Total Pages
      15
    • Publisher
      丸善株式会社
    • Related Report
      2006 Annual Research Report
  • [Book] 酵素工学ニュース2006

    • Author(s)
      安達宏昭, 森勇介, 佐々木孝友, 高野和文, 松村浩由, 井上豪, 村上聡
    • Total Pages
      5
    • Publisher
      酵素工学研究会
    • Related Report
      2006 Annual Research Report

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Published: 2006-04-01   Modified: 2016-04-21  

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