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Analysis of SIM gene expression and SIM protein interaction in Down Syndrome

Research Project

Project/Area Number 18790766
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Embryonic/Neonatal medicine
Research InstitutionKyorin University

Principal Investigator

YAMAKI Akiko  Kyorin University, 保健学部, 講師 (40296546)

Project Period (FY) 2006 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥5,000,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥600,000)
Fiscal Year 2009: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2008: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2007: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 2006: ¥1,400,000 (Direct Cost: ¥1,400,000)
Keywordsダウン症候群 / SIM2 / プロモーター / 転写因子 / SIM2遺伝子 / ゲルシフトアッヤイ / HIF / NF1 / MyoD / ダウン症 / SIM2_L / SIM2_s / SIM遺伝子 / プロモーター解析
Research Abstract

The human SIM2 gene is a gene that is located in chromosome 21q22.2 in Down syndrome chromosome region and the SIM2 protein is a transcription factor which belong to bHLH-PAS family. SIM2 protein act when generate dimer with transcription factors which are ARNT and ARNT2. Dimerization domain of SIM2 protein with ARNT protein has not been done in detail, so we had analyzed the SIM2-ARNT and SIM2-ARNT2 dimerization domain using deletion mutants for each functional domain in the SIM2 protein. After all, there are different dimerization domain in SIM2 protein required by partner proteins. Since there are two SIM2 protein that is differenciated by splicing, we have conducted analysis to identify how the function of SIM2 gene expression is different. Promoter assay and gel retardation assay showd that SIM2l and SIM2s seems to be regulated by different transcription factors.

Report

(5 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report   Self-evaluation Report ( PDF )
  • 2006 Annual Research Report
  • Research Products

    (9 results)

All 2008 2007 2006

All Journal Article (2 results) (of which Peer Reviewed: 2 results) Presentation (7 results)

  • [Journal Article] Analysis of the promoter region of human placenta-specific DSCR4 gene.2008

    • Author(s)
      Satoko Asai, Akiko Yamaki, Jun Kudoh, Nobuyoshi Shimizu, Yoshiko Shimizu
    • Journal Title

      Biochemica et Biophysica Acta. 1779

      Pages: 40-50

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Analysis of the promoter region of human placenta-specific DSCR4 gene2008

    • Author(s)
      Satoko Asai, Akiko Yamaki, Jun Kudoh, Nobuyoshi Shimizu, Yoshiko Shimizu
    • Journal Title

      Biochimica et Biophysica Acta 1779

      Pages: 40-50

    • Related Report
      2008 Self-evaluation Report
    • Peer Reviewed
  • [Presentation] bHLH-PASファミリー転写因子のSIM2は体内時計タンパク質BMAL1と相互作用する2007

    • Author(s)
      清水淑子、八巻明子, ら
    • Organizer
      第30回日本分子生物学会年会・第80回日本生化学会合同大会
    • Place of Presentation
      横浜
    • Related Report
      2009 Final Research Report
  • [Presentation] ダウン症関連遺伝子タンパク質SIM2と体内時計タンパク質BMAL1との相互作用2007

    • Author(s)
      清水淑子、八巻明子, ら
    • Organizer
      第14回日本遺伝子診療学会大会
    • Place of Presentation
      愛媛
    • Related Report
      2009 Final Research Report
  • [Presentation] bHLH-PASファミリー転写因子SIM1、SIM2は体内時計タンパク質BMAL1と相互作用する2007

    • Author(s)
      清水淑子、八巻明子、池田正明、工藤純、清水信義
    • Organizer
      第30回日本分子生物学会年会、第80回日本生化学会年会(ポスター発表)
    • Place of Presentation
      横浜
    • Related Report
      2008 Self-evaluation Report
  • [Presentation] Hyaluronan synthetase 2 is a target gene of human SIM2 transcription factor2006

    • Author(s)
      Y. Shimizu, A. Yamaki, et al.
    • Organizer
      56th Annual Meeting ASHG
    • Place of Presentation
      New Orleans, USA
    • Related Report
      2009 Final Research Report
  • [Presentation] ヒトSIM2転写調節遺伝子はHAS2遺伝子の発現を調節する2006

    • Author(s)
      清水淑子、八巻明子, ら
    • Organizer
      第13回日本遺伝子診療学会大会
    • Place of Presentation
      東京
    • Related Report
      2009 Final Research Report
  • [Presentation] Hyaluronan synthetase 2 as a target gene of human SIM22006

    • Author(s)
      Y. Shimizu, A. Yamaki, et al.
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology and 11th FAOBMB Congress
    • Place of Presentation
      Kyoto, Japan
    • Related Report
      2009 Final Research Report
  • [Presentation] Molecular interaction of single-minded (SIM) proteins with Aryl hydrocarbon receptor translocator (ARNT) proteins.2006

    • Author(s)
      Akiko Yamaki, et al.
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology and 11th FAOBMB Congress
    • Place of Presentation
      Kyoto, Japan
    • Related Report
      2009 Final Research Report

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Published: 2006-04-01   Modified: 2016-04-21  

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