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Development of large-scale first-principles MD and its applications of nano-structured materials

Research Project

Project/Area Number 18H01143
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 13010:Mathematical physics and fundamental theory of condensed matter physics-related
Research InstitutionNational Institute for Materials Science

Principal Investigator

MIYAZAKI Tsuyoshi  国立研究開発法人物質・材料研究機構, 国際ナノアーキテクトニクス研究拠点, MANA主任研究者 (50354147)

Co-Investigator(Kenkyū-buntansha) 中田 彩子  国立研究開発法人物質・材料研究機構, 国際ナノアーキテクトニクス研究拠点, 主任研究員 (20595152)
Project Period (FY) 2018-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥17,160,000 (Direct Cost: ¥13,200,000、Indirect Cost: ¥3,960,000)
Fiscal Year 2021: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2020: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2019: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2018: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords大規模DFT計算 / ナノ物質 / ナノ粒子触媒 / 物性理論 / 量子化学 / 第一原理計算 / ナノ構造物質 / 触媒 / ナノ粒子 / 物性物理 / 理論化学 / 大規模第一原理計算 / オーダーN法 / 分子動力学 / ナノ微粒子触媒
Outline of Final Research Achievements

In this project, we developed an efficient method to employ large-scale first-principles molecular dynamics (FPMD) using the multisite method, which enables us to perform large-scale DFT calculations with accurate local basis sets. The subroutines to calculate the free energy profiles with the large-scale FPMD simulations were also implemented to our linear-scaling DFT code CONQUEST. The developed methods were applied to the theoretical studies on various systems, such as nonperiodic amorphous systems, anti-cancer drug molecules in water, complex domain structures of a ferroelectric material and so on. The program CONQUEST was released to public with the MIT license in 2020 January.

Academic Significance and Societal Importance of the Research Achievements

通常の第一原理分子動力学では扱える系が小さいという制約があり、今までは整然と原子が並んだ固体中の現象や比較的単純な分子の反応が主なターゲットであった。本研究によって開発された大規模第一原理分子動力学手法によって、今まで扱うことが困難であった強誘電体の複雑な分域構造やアモルファスなどの非周期構造に対して高精度の第一原理分子動力学にもとづいた研究が可能となったことは学術的意義が高い。また、開発されたプログラムは一般の研究者が無償で使えるように公開された。このことによる波及効果も今後期待できると考えている。

Report

(5 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (43 results)

All 2022 2021 2020 2019 2018 Other

All Int'l Joint Research (8 results) Journal Article (12 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 12 results,  Open Access: 4 results) Presentation (15 results) (of which Int'l Joint Research: 11 results,  Invited: 7 results) Book (1 results) Remarks (7 results)

  • [Int'l Joint Research] University College Lonwon(英国)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] University of Bordeaux(フランス)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] University College London(英国)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] University of Bordeaux(フランス)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] University College London(英国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] University of Bordeauxr(フランス)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] University College London(英国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] University of Bordeaux(フランス)

    • Related Report
      2018 Annual Research Report
  • [Journal Article] Structural analysis based on unsupervised learning: Search for a characteristic low-dimensional space by local structures in atomistic simulations2022

    • Author(s)
      Tamura Ryo、Matsuda Momo、Lin Jianbo、Futamura Yasunori、Sakurai Tetsuya、Miyazaki Tsuyoshi
    • Journal Title

      Physical Review B

      Volume: 105 Issue: 7 Pages: 1-18

    • DOI

      10.1103/physrevb.105.075107

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The investigation of methane storage at the Ni-MOF-74 material: a periodic DFT calculation2021

    • Author(s)
      Yeh Chen-Hao、Khan Abdul Hannan、Miyazaki Tsuyoshi、Jiang Jyh-Chiang
    • Journal Title

      Physical Chemistry Chemical Physics

      Volume: 23 Issue: 21 Pages: 12270-12279

    • DOI

      10.1039/d1cp01276b

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Air-Stable and Reusable Cobalt Phosphide Nanoalloy Catalyst for Selective Hydrogenation of Furfural Derivatives2021

    • Author(s)
      Ishikawa Hiroya、Sheng Min、Nakata Ayako、Nakajima Kiyotaka、Yamazoe Seiji、Yamasaki Jun、Yamaguchi Sho、Mizugaki Tomoo、Mitsudome Takato
    • Journal Title

      ACS Catalysis

      Volume: 11 Issue: 2 Pages: 750-757

    • DOI

      10.1021/acscatal.0c03300

    • NAID

      120006952198

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Blue moon ensemble simulation of aquation free energy profiles applied to mono and bifunctional platinum anticancer drugs2020

    • Author(s)
      Hirakawa Teruo、Bowler David R.、Miyazaki Tsuyoshi、Morikawa Yoshitada、Truflandier Lionel A.
    • Journal Title

      Journal of Computational Chemistry

      Volume: 41 Issue: 22 Pages: 1973-1984

    • DOI

      10.1002/jcc.26367

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] First-principles study of topologically protected vortices and ferroelectric domain walls in hexagonal YGaO32020

    • Author(s)
      Smabraten Didrik R.、Nakata Ayako、Meier Dennis、Miyazaki Tsuyoshi、Selbach Sverre M.
    • Journal Title

      Physical Review B

      Volume: 102 Issue: 14

    • DOI

      10.1103/physrevb.102.144103

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Structural change of damaged polyethylene by beta-decay of substituted tritium using reactive force field2020

    • Author(s)
      Li Haolun、Fujiwara Susumu、Nakamura Hiroaki、Mizuguchi Tomoko、Nakata Ayako、Miyazaki Tsuyoshi、Saito Shinji
    • Journal Title

      Japanese Journal of Applied Physics

      Volume: 60 Issue: SA Pages: SAAB06-SAAB06

    • DOI

      10.35848/1347-4065/abbdc8

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Large scale and linear scaling DFT with the CONQUEST code2020

    • Author(s)
      Nakata Ayako、Baker Jack S.、Mujahed Shereif Y.、Poulton Jack T. L.、Arapan Sergiu、Lin Jianbo、Raza Zamaan、Yadav Sushma、Truflandier Lionel、Miyazaki Tsuyoshi、Bowler David R.
    • Journal Title

      The Journal of Chemical Physics

      Volume: 152 Issue: 16

    • DOI

      10.1063/5.0005074

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] The pseudoatomic orbital basis: electronic accuracy and soft-mode distortions in ABO3 perovskites2020

    • Author(s)
      Baker Jack S、Miyazaki Tsuyoshi、Bowler David R
    • Journal Title

      Electronic Structure

      Volume: 2 Issue: 2 Pages: 025002-025002

    • DOI

      10.1088/2516-1075/ab950e

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Molecular dynamics study on DNA damage by tritium disintegration2019

    • Author(s)
      Nakamura Hiroaki、Miyanishi Hisanori、Yasunaga Takuo、Fujiwara Susumu、Mizuguchi Tomoko、Nakata Ayako、Miyazaki Tsuyoshi、Otsuka Takao、Kenmotsu Takahiro、Hatano Yuji、Saito Shinji
    • Journal Title

      Japanese Journal of Applied Physics

      Volume: 59 Issue: SA Pages: SAAE01-SAAE01

    • DOI

      10.7567/1347-4065/ab460d

    • NAID

      210000157157

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Highly accurate local basis sets for large-scale DFT calculations in conquest2019

    • Author(s)
      Bowler David R.、Baker Jack S.、Poulton Jack T. L.、Mujahed Shereif Y.、Lin Jianbo、Yadav Sushma、Raza Zamaan、Miyazaki Tsuyoshi
    • Journal Title

      Japanese Journal of Applied Physics

      Volume: 58 Issue: 10 Pages: 100503-100503

    • DOI

      10.7567/1347-4065/ab45af

    • NAID

      210000157142

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Machine Learning Forces Trained by Gaussian Process in Liquid States: Transferability to Temperature and Pressure2019

    • Author(s)
      Ryo Tamura, Jianbo Lin, and Tsuyoshi Miyazaki
    • Journal Title

      Journal of the Physical Society of Japan

      Volume: 88 Issue: 4 Pages: 044601-044601

    • DOI

      10.7566/jpsj.88.044601

    • NAID

      40021866626

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Large-Scale DFT Study of Ge/Si 3D Nanoislands and Core-Shell Nanowires2018

    • Author(s)
      T. Miyazaki
    • Journal Title

      ECS TRANSACTIONS

      Volume: 86 Issue: 7 Pages: 269-279

    • DOI

      10.1149/08607.0269ecst

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Presentation] 大規模第一原理計算プログラム CONQUESTの開発と公開: ナノ構造物質の原子と電子の振る舞いをコンピュータで解明2022

    • Author(s)
      宮崎剛、中田彩子
    • Organizer
      SATテクノロジー・ショーケース
    • Related Report
      2021 Annual Research Report
  • [Presentation] Development of a large-scale DFT code CONQUEST and its applications on GaN systems2021

    • Author(s)
      Tsuyoshi Miyazaki and Masato Oda
    • Organizer
      International Symposium of Wide Gap Semiconductor Growth, Process and Device Simulation 2021
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Large-Scale DFT Calculations for Materials with Complicated Structures2021

    • Author(s)
      Ayako Nakata, Tsuyoshi Miyazaki, David R. Bowler
    • Organizer
      MANA International Symposium 2021
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 複雑、不規則材料のための大規模第一原理計算2021

    • Author(s)
      中田彩子
    • Organizer
      日本物理学会 第76回年次大会(2021年)
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 大規模DFT計算によるPd@Agコアシェルナノ粒子触媒の構造・電子状態解析2019

    • Author(s)
      中田彩子、宮崎剛
    • Organizer
      第22回理論化学討論会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Linear-scaling First-principles Molecular Dynamics Simulations of Complex Nano-structured Materials with the CONQUEST Code2019

    • Author(s)
      Tsuyoshi Miyazaki
    • Organizer
      4th International Workshop on Models and Data for Plasma-Material Interaction in Fusion Devices (MoD-PMI 2019)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Linear-scaling DFT simulations of complex nano-structured materials with the CONQUEST code2019

    • Author(s)
      Tsuyoshi Miyazaki
    • Organizer
      10th International Conference on Materials for Advanced Technologies
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Atomic and electronic structure analysis of Pd@Ag core-shell nanoparticles by large-scale DFT calculations2019

    • Author(s)
      Ayako Nakata, Tsuyoshi Miyazaki
    • Organizer
      10th Congress of the International Society of Theoretical Chemical Physics (ISTCP-X)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Linear-scaling ab initio molecular dynamics study of complex structure of materials with the CONQUEST code2019

    • Author(s)
      J. Lin, Z. Raza, D. R. Bowler and T. Miyazaki
    • Organizer
      The 10th International Conference of the Asian Consortium on Computational Materials Science
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Large-scale DFT study on Pd@Ag core-shell nanoparticles2019

    • Author(s)
      Ayako Nakata, David R. Bowler, Tsuyoshi Miyazaki
    • Organizer
      The 22nd Asian Workshop on First-Principles Electronic Structure Calculations
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Site- and size-dependence of atomic and electronic structures of metallic nanoparticles by large-scale DFT calculations2019

    • Author(s)
      Ayako Nakata, David R. Bowler, Tsuyoshi Miyazaki
    • Organizer
      14th International Conference on the Structure of Non-Crystalline Materials
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Large-scale DFT study of complex nano-structured materials with the CONQUEST code2019

    • Author(s)
      T. Miyazaki
    • Organizer
      Materials Meeting 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Atomic and electronic structure analysis of metallic nanoparticle catalysts by large-scale DFT calculations2019

    • Author(s)
      Ayako Nakata, Tsuyoshi Miyazaki
    • Organizer
      Materials Meeting 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Large-scale DFT study of complex surfaces and interfaces with the CONQUEST code2019

    • Author(s)
      T. Miyazaki
    • Organizer
      The 43rd International Conference and Exposition on Advanced Ceramics and Composites (ICACC 2019)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 大規模第一原理計算プログラムCONQUESTの開発とナノ構造物質への応用2019

    • Author(s)
      宮崎剛
    • Organizer
      触媒・電池元素戦略研究拠点 第14回公開シンポジウム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Book] Large-Scale First-Principles Calculation Technique for Nanoarchitectonics: Local Orbital and Linear-Scaling DFT Methods with the CONQUEST Code (System-Materials Nanoarchitectonics)2022

    • Author(s)
      T. Miyazaki, A. Nakata, D. R. Bowler
    • Total Pages
      338
    • Publisher
      Springer, Tokyo
    • ISBN
      9784431569114
    • Related Report
      2021 Annual Research Report
  • [Remarks] CONQUEST

    • URL

      https://ordern.github.io

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
  • [Remarks] CONQUEST の公開

    • URL

      https://github.com/OrderN/CONQUEST-release

    • Related Report
      2021 Annual Research Report
  • [Remarks] 量子物性シミュレーショングループ

    • URL

      https://www.nims.go.jp/cmsc/fps1/

    • Related Report
      2021 Annual Research Report
  • [Remarks] CONQUEST release

    • URL

      https://github.com/OrderN/CONQUEST-release

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
  • [Remarks] First-Principles Simulation Group

    • URL

      https://www.nims.go.jp/cmsc/fps1/

    • Related Report
      2020 Annual Research Report
  • [Remarks] CONQUEST

    • URL

      http://www.linear-scaling.org

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
  • [Remarks] First-principles Simulation Group

    • URL

      http://www.nims.go.jp/cmsc/fps1

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report

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Published: 2018-04-23   Modified: 2023-01-30  

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