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metabolism-dependent microrheology of glass-forming cytoplasm

Research Project

Project/Area Number 18H01189
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 13040:Biophysics, chemical physics and soft matter physics-related
Research InstitutionKyushu University

Principal Investigator

Mizuno Daisuke  九州大学, 理学研究院, 教授 (30452741)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥17,550,000 (Direct Cost: ¥13,500,000、Indirect Cost: ¥4,050,000)
Fiscal Year 2020: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2019: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2018: ¥8,190,000 (Direct Cost: ¥6,300,000、Indirect Cost: ¥1,890,000)
Keywordsマイクロレオロジー / 非平衡 / 細胞質 / アクティブガラス / アクティブマター / 非平衡メカニクス / 非平衡散逸 / 非平衡力学 / フィードバックマイクロレオロジー / 細胞質ガラス / アクティブ流動化 / 代謝 / 揺らぎ応答 / 細胞
Outline of Final Research Achievements

Cytoplasm forms glass when metabolic activities are lost, but the living cytoplasm maintains fluidity. Clearly, activeness of living systems profoundly affects their mechanical properties, but the underlying physical mechanism is largely unknown. That is because statistical mechanics common at thermodynamic equilibrium do not apply to living cytoplasm since it is driven out of equilibrium by the mechanical energy derived from metabolism. In this study, in order to elucidate the physical mechanism, we reproduced the phenomenon by creating an in vitro model that can control the non-equilibrium activity by exchanging the metabolites and byproducts. By conducting microrheology experiments, it was found that a suspension that exhibits biological turbulence fluidizes as the violation of the fluctuation-dissipation theorem is pronounced. Furthermore, it was found that even the thermal fluctuation at high frequencies is enhanced significantly with metabolic activities.

Academic Significance and Societal Importance of the Research Achievements

生き物らしさは、複雑な散逸構造を内包する非平衡系である細胞内部における、生体物質の力学挙動に宿る。しかしながら、科学の一般的な方法論である要素還元主義が通用しないメカニズムに基づくために、その詳細は神秘のベールに包まれている。本研究では、細胞内部の非平衡環境を模したモデル系を構築する新しい方法論を確立した。非平衡系の力学を研究する新しい方法論であり、人類が追究してきた「生命の根源」に対する現代的な解を与えるための実験的成果に繋がる。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (36 results)

All 2021 2020 2019 2018 Other

All Journal Article (6 results) (of which Peer Reviewed: 5 results) Presentation (29 results) (of which Int'l Joint Research: 6 results,  Invited: 11 results) Remarks (1 results)

  • [Journal Article] Rapid local compression in active gels is caused by nonlinear network response2020

    • Author(s)
      Mizuno D.、Tardin C.、Schmidt C. F.
    • Journal Title

      Soft Matter

      Volume: 16 Issue: 40 Pages: 9369-9382

    • DOI

      10.1039/c9sm02362c

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Optimization of Optical Trapping and Laser Interferometry in Biological Cells2020

    • Author(s)
      Sugino Yujiro、Ikenaga Masahiro、Mizuno Daisuke
    • Journal Title

      Applied Sciences

      Volume: 10 Issue: 14 Pages: 4970-4970

    • DOI

      10.3390/app10144970

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biophysics at Kyushu University2020

    • Author(s)
      Akiyama Ryo、Annaka Masahiko、Kohda Daisuke、Kubota Hiroyuki、Maeda Yusuke、Matsumori Nobuaki、Mizuno Daisuke、Yoshida Norio
    • Journal Title

      Biophysical Reviews

      Volume: 12 Issue: 2 Pages: 245-247

    • DOI

      10.1007/s12551-020-00643-2

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Experimental and theoretical energetics of walking molecular motors under fluctuating environments2020

    • Author(s)
      Ariga Takayuki、Tomishige Michio、Mizuno Daisuke
    • Journal Title

      Biophysical Reviews

      Volume: 12 Issue: 2 Pages: 503-510

    • DOI

      10.1007/s12551-020-00684-7

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nonequilibrium Energetics of Molecular Motor Kinesin2018

    • Author(s)
      Ariga Takayuki、Tomishige Michio、Mizuno Daisuke
    • Journal Title

      Physical Review Letters

      Volume: 121 Issue: 21 Pages: 218101-218101

    • DOI

      10.1103/physrevlett.121.218101

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nonequilibrium Energetics of Single Molecule Motor, Kinesin-12018

    • Author(s)
      Ariga Takayuki、Tomishige Michio、Mizuno Daisuke
    • Journal Title

      Biophysical Journal

      Volume: 114 Issue: 3 Pages: 509a-509a

    • DOI

      10.1016/j.bpj.2017.11.2783

    • Related Report
      2018 Annual Research Report
  • [Presentation] 代謝活性を持つ細胞質モデルのレオロジーと構造緩和2021

    • Author(s)
      杉野裕次郎, 熊丸一平, 福本昂平, 曽和義幸, 高橋達郎, 水野大介
    • Organizer
      日本物理学会 第76回年次大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] レーザー干渉法における光てこの応用2021

    • Author(s)
      井口昇之, 水野大介
    • Organizer
      日本物理学会 第76回年次大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 光てこを用いたレーザー干渉法による粒子追跡2021

    • Author(s)
      井口昇之, 水野大介
    • Organizer
      応用物理学会春季学術講演会
    • Related Report
      2020 Annual Research Report
  • [Presentation] レーザー干渉法を用いたアクティブマターの力学計測2020

    • Author(s)
      杉野裕次郎, 福本昂平, 三谷一晃, 西澤賢治, 高橋達郎, 水野大介
    • Organizer
      日本物理学会 第75回年次大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 生体高分子ゲルの局所力学応答2020

    • Author(s)
      白木啓悟, 本田菜月, Francis van Esterik, 水野大介
    • Organizer
      日本物理学会 第75回年次大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 局所外力印加によりひき起こされるミクロスケールでの高分子の構造緩和2020

    • Author(s)
      西澤賢治, 本田菜月, 水野大介
    • Organizer
      日本物理学会 第75回年次大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 光てこを用いたレーザー干渉法による粒子追跡2020

    • Author(s)
      井口昇之, 三谷一晃, 水野大介
    • Organizer
      日本物理学会 第75回年次大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 局所的な力印加における濃厚コロイド懸濁液のマイクロレオロジー2020

    • Author(s)
      荊原佳祐, 江藤高宏, 林原蹴斗, 荻原僚, 水野大介
    • Organizer
      日本物理学会 第75回年次大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 外力誘起により流動する濃厚コロイド懸濁液のマイクロレオロジー2020

    • Author(s)
      江藤高宏, 荊原佳祐, 荻原僚, 水野大介
    • Organizer
      日本物理学会 第75回年次大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] アクティブ環境下でのキネシンの運動2020

    • Author(s)
      有賀隆行, 立石圭人, 富重道雄, 水野大介
    • Organizer
      日本物理学会 第75回年次大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] モーター蛋白質が生み出す非熱揺らぎの時空間特性と細胞質流動化2020

    • Author(s)
      水野大介
    • Organizer
      第10回分子モーター討論会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] ずり場印加下における濃厚コロイド懸濁液のマイクロレオロジー2020

    • Author(s)
      江藤高宏,荊原佳祐,水野大介
    • Organizer
      第126回日本物理学会九州支部例会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 局所的な力印加による濃厚コロイド懸濁液のマイクロレオロジー2020

    • Author(s)
      荊原佳祐,江藤高宏,水野大介
    • Organizer
      第126回日本物理学会九州支部例会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 非平衡系におけるアクティブ拡散と構造緩和の測定2020

    • Author(s)
      熊丸一平,杉野裕次郎,水野大介
    • Organizer
      第126回日本物理学会九州支部例会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 濃厚エマルジョンの広帯域マイクロレオロジー2020

    • Author(s)
      井口昇之,水野大介
    • Organizer
      第126回日本物理学会九州支部例会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Optical trap and laser interferometry in living cells2019

    • Author(s)
      D. Mizuno
    • Organizer
      OPIC optics photonics international congress 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Universal Glass-forming behavior and metabolism driven fluidization2019

    • Author(s)
      D. Mizuno
    • Organizer
      2019 International Workshop on Glass Physics in Beijing
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Microscopic Mechanics of Active Matters and Living Systems2019

    • Author(s)
      D. Mizuno
    • Organizer
      2019 NTNU-Kyushu U Joint Forum
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 細胞の活きの良さの測り方~光捕捉とレーザー干渉を用いた力学測定~2019

    • Author(s)
      水野 大介
    • Organizer
      2019 光塾
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] ガラス形成物質としての細胞質の代謝由来の構造緩和2019

    • Author(s)
      水野大介
    • Organizer
      日本物理学会 シンポジウム~ガラスの物理とその広がり~
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Glassy mechanics of living cytoplasm, and its similarity to droplet suspensions2019

    • Author(s)
      D. Mizuno
    • Organizer
      第92回日本生化学会シンポジウム 液体相分離と細胞機能
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Non-Gaussian limit fluctuations in active swimmer suspensions2019

    • Author(s)
      T. Kurihara, Y. Ando, I. Zaid and D. Mizuno
    • Organizer
      American Physical Society, March meeting
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 光捕捉とレーザー干渉を用いた細胞力学計測2019

    • Author(s)
      水野大介
    • Organizer
      サイズ生物学ワークショップ2019
    • Related Report
      2018 Annual Research Report
  • [Presentation] 光捕捉とレーザー干渉法による細胞内揺らぎと力学の観測2019

    • Author(s)
      水野大介
    • Organizer
      日本光学会・レーザー学会共催シンポジウム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 細胞内部のレオロジーと活きの良さの測り方2018

    • Author(s)
      水野大介
    • Organizer
      第66回レオロジー討論会 第20回 レオロジーフォーラム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Universal glass-forming behavior of in vitro and living cytoplasm -its similarity to droplet suspensions?-2018

    • Author(s)
      Daisuke Mizuno
    • Organizer
      EMBO | EMBL Symposium: Cellular Mechanisms Driven by Liquid Phase Separation
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Nonequilibrium fluctuations and energetics of molecular motors in vitro and in vivo2018

    • Author(s)
      Daisuke Mizuno
    • Organizer
      The 79th Okazaki Conference, Synthetic, Biological, and Hybrid Molecular Engines
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] アクティブガラスとしての細胞、および、細胞質の力学的性質2018

    • Author(s)
      水野大介
    • Organizer
      東京大学物性研究所短期研究会「ガラス転移と関連分野の最先端研究」
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Non-Gaussian limit fluctuations in active swimmer suspensions2018

    • Author(s)
      Daisuke Mizuno
    • Organizer
      "Soft matter physics:from the perspective of the essential heterogeneity
    • Related Report
      2018 Annual Research Report
  • [Remarks]

    • URL

      http://bio2.phys.kyushu-u.ac.jp/

    • Related Report
      2018 Annual Research Report

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Published: 2018-04-23   Modified: 2022-01-27  

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