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Reconstruction of co-evolutionary pathway between RNA and protein on the ancient Earth

Research Project

Project/Area Number 18H01328
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 17050:Biogeosciences-related
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Tagami Shunsuke  国立研究開発法人理化学研究所, 生命機能科学研究センター, チームリーダー (40586939)

Project Period (FY) 2018-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥17,160,000 (Direct Cost: ¥13,200,000、Indirect Cost: ¥3,960,000)
Fiscal Year 2021: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2020: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2019: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2018: ¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Keywords生命の起原 / RNAポリメラーゼ / ペプチド / RNA / 生命の起源
Outline of Final Research Achievements

In this study, we investigated the effects of simple peptides on ribozyme activity in order to recapitulate the coevolutionary pathway of ancient peptides and RNA. We demonstrated that even simple peptides such as KKVVVVVV were able to achieve functions such as self-assembly, RNA concentration, and ribozyme activation. In addition, we reconstructed the ancient protein structure preserved in the active center of RNA polymerase with short peptides, resulting in the reproduction of the ancient protein fold with only seven amino acid types. These seven amino acids are coded in a corner in the genetic code and are estimated to be the ancient genetic code.

Academic Significance and Societal Importance of the Research Achievements

生命誕生の謎は生物学上最大の問題の1つである.特に核酸とタンパク質がお互いに依存し合う複雑なシステムがどのように出来上がったのかは生命誕生の鍵を握る重要な問いであると言える.そこで、本研究では初期生命におけるRNAとタンパク質の共進化のプロセスを再現するため、人工的なRNA酵素の実験系を使用して、RNA単独では克服できない課題をペプチド・タンパク質の添加により解決し、「RNAワールドにおいて、なぜタンパク質が必要とされ、どのように進化したか」を解明することを目指した。この研究で,単純なペプチドがRNAを補助し,さらに立体構造をもつタンパク質に進化していった過程の一端を明らかにすることができた.

Report

(5 results)
  • 2022 Final Research Report ( PDF )
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (6 results)

All 2021 2019 2018 Other

All Journal Article (1 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 1 results) Presentation (3 results) Remarks (2 results)

  • [Journal Article] Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase2021

    • Author(s)
      Sota Yagi, Aditya K. Padhi, Jelena Vucinic, Sophie Barbe, Thomas Schiex, Reiko Nakagawa, David Simoncini*, Kam Y. J. Zhang*, and Shunsuke Tagami*
    • Journal Title

      Journal of the American Chemical Society

      Volume: 143 Issue: 39 Pages: 15998-16006

    • DOI

      10.1021/jacs.1c05367

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] RNAポリメラーゼの実験的進化-RNAワールドからプロテインワールドへ-2019

    • Author(s)
      田上俊輔
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] リボザイムの活性をコントロールするペプチドの探索2018

    • Author(s)
      田上俊輔
    • Organizer
      日本進化学会 第20回大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ペプチドによるリボザイム機能のコントロール2018

    • Author(s)
      田上俊輔
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Remarks] タンパク質の進化から生命誕生の謎に挑む

    • URL

      https://www.riken.jp/pr/closeup/2022/20220221_1/index.html

    • Related Report
      2021 Annual Research Report
  • [Remarks] 生命誕生初期のタンパク質を再現する試み

    • URL

      https://www.riken.jp/press/2021/20211202_2/index.html

    • Related Report
      2021 Annual Research Report

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Published: 2018-04-23   Modified: 2024-01-30  

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