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Functional and structural analyses of complex-forming and activity-regulation mechanisms of the key enzymes in aspartate-pathway

Research Project

Project/Area Number 18H02138
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 38030:Applied biochemistry-related
Research InstitutionKagawa University

Principal Investigator

Sakuraba Haruhiko  香川大学, 農学部, 教授 (90205823)

Project Period (FY) 2018-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥17,290,000 (Direct Cost: ¥13,300,000、Indirect Cost: ¥3,990,000)
Fiscal Year 2021: ¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2020: ¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2019: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2018: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Keywords超好熱菌 / アスパラギン酸キナーゼ / ホモセリン脱水素酵素 / アスパラギン酸経路 / Thermotoga maritima / アスパラギン酸セミアルデヒド脱水素酵素 / 構造解析
Outline of Final Research Achievements

Aspartate kinase (AK) and homoserine dehydrogenase (HseDH) are involved in the biosynthetic pathway for L-threonine and L-lysine in plants and microorganisms. Both enzymes are important as potential targets for improving the nutritional value of food crops. AK and HseDH function as either a monofunctional enzyme or fused-bifunctional enzyme (AK-HseDH). These enzymes are highly regulated by the end products. However, information on the regulation mechanism remains limited because of their instability.
In the hyperthermophilic bacterium, Thermotoga maritima, we found presence of AK-HseDH and AK, both exhibit high stability. We revealed that the former to be an L-threonine-sensitive AK-HseDH, whose activity was not inhibited by L-lysine and the latter to be an L-lysine-sensitive AK, whose activity was not inhibited by L-threonine. Our results suggest that, in T. maritima, the AK-HseDH is related to the synthesis of L-threonine, whereas the AK functions in the synthesis of L-lysine.

Academic Significance and Societal Importance of the Research Achievements

二機能型AK-HseDHおよび単一機能型AKはヒトを含む哺乳動物には存在しないため、病原微生物に対する抗菌薬開発の分子標的として注目される。また植物では、本経路の酵素反応によって上記必須アミノ酸含量が決まるため、酵素改変による食用作物や畜産飼料の栄養価改善が期待される。本研究では、T. maritimaの二機能型AK-HseDHと単一機能型AKを解析し、それぞれ従来と異なるタイプの調節機構を持ち、2つの酵素が役割分担をしていることが示唆された。このような例はこれまで知られておらず、新規な調節機構を提唱する点で学術的意義は大きい。また酵素改変による技術開発につながることが期待される。

Report

(5 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (25 results)

All 2022 2021 2020 2019 2018

All Journal Article (10 results) (of which Peer Reviewed: 10 results,  Open Access: 2 results) Presentation (14 results) (of which Invited: 2 results) Book (1 results)

  • [Journal Article] Crystal structure of a novel type of ornithine δ-aminotransferase from the hyperthermophilic archaeon Pyrococcus horikoshii2022

    • Author(s)
      Kawakami Ryushi、Ohshida Tatsuya、Hayashi Junji、Yoneda Kazunari、Furumoto Toshio、Ohshima Toshihisa、Sakuraba Haruhiko
    • Journal Title

      International Journal of Biological Macromolecules

      Volume: 208 Pages: 731-740

    • DOI

      10.1016/j.ijbiomac.2022.03.114

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Stereospecificity of hydride transfer and molecular docking in FMN-dependent NADH-indigo reductase of Bacillus smithii2021

    • Author(s)
      Kazunari Yoneda, Haruhiko Sakuraba, Tomohiro Araki, Toshihisa Ohshima
    • Journal Title

      FEBS open bio

      Volume: 11 Issue: 7 Pages: 1981-1986

    • DOI

      10.1002/2211-5463.13200

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Characterization of a novel moderate-substrate specificity amino acid racemase from the hyperthermophilic archaeon Thermococcus litoralis2021

    • Author(s)
      Kawakami Ryushi、Kinoshita Chinatsu、Kawase Tomoki、Sato Mikio、Hayashi Junji、Sakuraba Haruhiko、Ohshima Toshihisa
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 85 Issue: 7 Pages: 1650-1657

    • DOI

      10.1093/bbb/zbab078

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural and biochemical characterization of an extremely thermostable FMN-dependent NADH-indigo reductase from Bacillus smithii.2020

    • Author(s)
      Kazunari Yoneda, Misa Yoshioka, Haruhiko Sakuraba, Tomohiro Araki, Toshihisa Ohshima
    • Journal Title

      International journal of biological macromolecules

      Volume: 164 Pages: 3259-3267

    • DOI

      10.1016/j.ijbiomac.2020.08.197

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of dye-linked d-amino acid dehydrogenase from Sulfurisphaera tokodaii expressed using an archaeal recombinant protein expression system.2020

    • Author(s)
      Takenori Satomura, Shin Emoto, Norio Kurosawa, Toshihisa Ohshima, Haruhiko Sakuraba, Shin-Ichiro Suye
    • Journal Title

      Journal of bioscience and bioengineering

      Volume: 130 Issue: 3 Pages: 247-252

    • DOI

      10.1016/j.jbiosc.2020.04.008

    • NAID

      40022351569

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Unique active site formation in a novel galactose 1‐phosphate uridylyltransferase from the hyperthermophilic archaeon Pyrobaculum aerophilum2020

    • Author(s)
      Ohshida Tatsuya、Hayashi Junji、Yoneda Kazunari、Ohshima Toshihisa、Sakuraba Haruhiko
    • Journal Title

      Proteins: Structure, Function, and Bioinformatics

      Volume: 88 Issue: 5 Pages: 669-678

    • DOI

      10.1002/prot.25848

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A novel bifunctional aspartate kinase-homoserine dehydrogenase from the hyperthermophilic bacterium, Thermotoga maritima.2018

    • Author(s)
      Ohshida T, Koba K, Hayashi J, Yoneda K, Ohmori T, Ohshima T, Sakuraba H
    • Journal Title

      Bioscience, biotechnology, and biochemistry

      Volume: 82 Issue: 12 Pages: 2084-2093

    • DOI

      10.1080/09168451.2018.1511365

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effects of multicopper oxidase orientation in multiwalled carbon nanotube biocathodes on direct electron transfer.2018

    • Author(s)
      Takamura E, Nakamura T, Sakamoto H, Satomura T, Sakuraba H, Ohshima T, Suye SI
    • Journal Title

      Biotechnology and applied biochemistry

      Volume: 66 Issue: 2 Pages: 137-141

    • DOI

      10.1002/bab.1710

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Enzymological characteristics of a novel archaeal dye-linked D-lactate dehydrogenase showing loose binding of FAD.2018

    • Author(s)
      Satomura T, Hayashi J, Ohshida T, Sakuraba H, Ohshima T, Suye SI
    • Journal Title

      Extremophiles

      Volume: 22 Issue: 6 Pages: 975-981

    • DOI

      10.1007/s00792-018-1054-3

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of the NADP and tartrate-bound complex of L-serine 3-dehydrogenase from the hyperthermophilic archaeon Pyrobaculum calidifontis2018

    • Author(s)
      Kazunari Yoneda, Haruhiko Sakuraba, Tomohiro Araki, Toshihisa Ohshima
    • Journal Title

      Extremophiles

      Volume: 22 Issue: 3 Pages: 395-405

    • DOI

      10.1007/s00792-018-1004-0

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Presentation] 好熱菌Geobacillus kaustophilusに存在する二種類のL-アラニンデヒドロゲナーゼのX線結晶構造解析2022

    • Author(s)
      額田 大輝, 大森 勇門, 大島敏久, 櫻庭 春彦
    • Organizer
      日本農芸化学会中四国支部第61回講演会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 超好熱アーキアPyrococcus horikoshiiにおけるL-Ile/D-allo-Ileによるアミノ酸ラセマーゼ遺伝子の発現制御2021

    • Author(s)
      川上 竜巳, 河瀬 智紀, 佐藤 樹夫, 櫻庭 春彦, 大島 敏久
    • Organizer
      極限環境生物学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 好熱菌Thermotoga maritima由来アスパラギン酸キナーゼに関する研究2021

    • Author(s)
      西野 祥平, 櫻庭 春彦
    • Organizer
      日本農芸化学会中四国支部 第59回 講演会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Bacillus smithii由来FMN-NADH依存性高度耐熱性インジゴ還元酵素の機能と構造解析2020

    • Author(s)
      米田 一成, 櫻庭 春彦, 荒木 朋洋, 大島 敏久
    • Organizer
      日本ビタミン学会第72回大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 超好熱アーキア由来ヘテロ4量体型L-proline脱水素酵素とL-prolineの生合成2020

    • Author(s)
      櫻庭 春彦, 大志田 達也, 川上 竜巳, 米田 一成, 大島 敏久
    • Organizer
      第460回ビタミンB研究協議会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 好熱菌由来色素依存性L-グルタミン酸脱水素酵素の酵素化学的性質の解析2020

    • Author(s)
      伊藤佑衣, 里村武範, 岩田峻弥, 櫻庭春彦, 大島敏久, 末信一朗
    • Organizer
      極限環境生物学会2020年度 (第21回) 年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 超好熱アーキアPyrobaculum aerophilum由来新規ガラクトース1-リン酸ウリジリルトランスフェラーゼに関する研究2020

    • Author(s)
      大志田 達也、林 順司、米田 一成、大島 敏久、櫻庭 春彦
    • Organizer
      日本農芸化学会大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 超好熱アーキアPyrococcus horikoshii OT‐3のオルニチンアミノトランスフェラーゼの機能解析と構造解析2019

    • Author(s)
      川上 竜巳、 半澤 七菜、 大志田 達也、 櫻庭 春彦、 大島 敏久
    • Organizer
      日本ビタミン学会第71回大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 超好熱菌由来ガラクトース1-リン酸ウリジリルトランスフェラーゼの構造解析2019

    • Author(s)
      櫻庭 春彦
    • Organizer
      第457回ビタミンB研究協議会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 超好熱アーキア由来NAD(P)依存性脱水素酵素の新奇な補酵素認識機構2018

    • Author(s)
      櫻庭春彦
    • Organizer
      日本生化学会大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] D‐アミノ酸脱水素酵素の構造情報に基づく基質特異性の改変2018

    • Author(s)
      櫻庭春彦
    • Organizer
      日本生物工学会大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 超好熱菌由来の新規なアスパラギン酸キナーゼ・ホモセリンデヒドロゲナーゼ融合酵素2018

    • Author(s)
      櫻庭春彦
    • Organizer
      ビタミンB研究協議会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 新規分岐鎖アミノ酸ラセマーゼ, イソロイシン2-エピメラーゼの構造解析2018

    • Author(s)
      林 順司, 牟田口祐太, 米田 一成, 大森 勇門, 大島 敏久, 櫻庭春彦
    • Organizer
      日本ビタミン学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Bacillus smithii 由来 FMN-NADH 依存性インジゴ還元酵素の機能と構造2018

    • Author(s)
      米田一成, 櫻庭春彦, 荒木朋洋, 大島敏久
    • Organizer
      日本ビタミン学会大会
    • Related Report
      2018 Annual Research Report
  • [Book] ビタミン・バイオファクター総合事典[2.2 ビタミンB2 生化学・生理学(代謝と作用機序)]2021

    • Author(s)
      日本ビタミン学会(櫻庭春彦,大島敏久)
    • Total Pages
      672
    • Publisher
      朝倉書店
    • ISBN
      9784254102925
    • Related Report
      2021 Annual Research Report

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Published: 2018-04-23   Modified: 2023-01-30  

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