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Exploration of Genetic Loci Contributing to Soybean Yield Stability and Enhanced Productivity through High-throughput Phenotyping and Environmental Monitoring

Research Project

Project/Area Number 18H02190
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 39020:Crop production science-related
Research InstitutionNational Agriculture and Food Research Organization

Principal Investigator

Kumagai Etsushi  国立研究開発法人農業・食品産業技術総合研究機構, 農業環境研究部門, 主任研究員 (80583442)

Co-Investigator(Kenkyū-buntansha) 小木曽 映里  独立行政法人国立科学博物館, 分子生物多様性研究資料センター, 特定非常勤研究員 (00646929)
長谷川 利拡  国立研究開発法人農業・食品産業技術総合研究機構, 農業環境研究部門, 研究領域長 (10228455)
屋比久 貴之  国立研究開発法人農業・食品産業技術総合研究機構, 東北農業研究センター, 研究員 (20824270)
Project Period (FY) 2018-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥16,250,000 (Direct Cost: ¥12,500,000、Indirect Cost: ¥3,750,000)
Fiscal Year 2022: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Fiscal Year 2021: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Fiscal Year 2020: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Fiscal Year 2019: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Fiscal Year 2018: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Keywords分光反射率 / リモートセンシング / 機械学習 / ダイズ / ハイスループットフェノタイピング / 環境計測 / 遺伝解析
Outline of Final Research Achievements

This study aimed to use high-throughput phenotyping methods and genetic information to address the problems associated with low soybean yield and breeding in Japan. Japanese and U.S. soybean cultivars were compared, and low yield and leaf photosynthetic capacity of Japanese cultivars were identified. Furthermore, we developed high-throughput phenotyping methods that non-destructively and rapidly capture aboveground biomass, leaf area index, and leaf photosynthetic capacity. Using these methods, the leaf photosynthetic capacity was mapped to relevant known gene regions, indicating the usefulness of this method.

Academic Significance and Societal Importance of the Research Achievements

この研究成果は、日本のダイズ品種改良において極めて重要な意義を持つ。従来の形質評価には時間と労力がかかり、破壊的な手法が必要であった。しかし、この研究では効率的な形質評価法を開発した。さらに、遺伝子情報の活用により、日本品種の収量性向上や光合成能力の向上に寄与することが期待できた。これにより、農業生産性の向上や食糧自給率の向上に繋がる。また、研究成果は科学界においても注目され、分光反射リモートセンシングと機械学習による形質評価手法の新規開発など、重要な知見が得られた。

Report

(6 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (8 results)

All 2023 2022 2021 2020 2018

All Journal Article (3 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 3 results,  Open Access: 1 results) Presentation (5 results) (of which Int'l Joint Research: 1 results)

  • [Journal Article] Lower photosynthetic rate and photosynthetic nitrogen use efficiency in northern Japanese soybean cultivars than Midwestern U.S. cultivars2022

    • Author(s)
      Kumagai Etsushi、Hasegawa Toshihiro
    • Journal Title

      Crop Science

      Volume: 63 Issue: 1 Pages: 266-277

    • DOI

      10.1002/csc2.20835

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A strong negative trade-off between seed number and 100-seed weight stalls genetic yield gains in northern Japanese soybean cultivars in comparison with Midwestern US cultivars2022

    • Author(s)
      Kumagai Etsushi、Yabiku Takayuki、Hasegawa Toshihiro
    • Journal Title

      Field Crops Research

      Volume: 283 Pages: 108539-108539

    • DOI

      10.1016/j.fcr.2022.108539

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] High-throughput characterization, correlation, and mapping of leaf photosynthetic and functional traits in the soybean (<i>Glycine max</i>) nested association mapping population2022

    • Author(s)
      Montes Christopher M、Fox Carolyn、Sanz-Saez Alvaro、Serbin Shawn P、Kumagai Etsushi、Krause Matheus D、Xavier Alencar、Specht James E、Beavis William D、Bernacchi Carl J、Diers Brian W、Ainsworth Elizabeth A
    • Journal Title

      Genetics

      Volume: 221

    • DOI

      10.1093/genetics/iyac065

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] 太陽光誘導クロロフィル蛍光によりダイズの群落光合成速度における品種間差や短期的CO2濃度応答を検出できるか?2023

    • Author(s)
      熊谷悦史、屋比久貴之
    • Organizer
      日本農業気象学会2023年全国大会講演
    • Related Report
      2022 Annual Research Report
  • [Presentation] 可視・近赤外領域のハイパースペクトル反射計測と回帰学習器を用いたダイズ個葉光合成の生化学モデルパラメータのハイスループットフェノタイピング2021

    • Author(s)
      熊谷悦史、木村建介、屋比久貴之、小木曽映里、平田香里、山田哲也、長谷川利拡
    • Organizer
      日本作物学会第 251 回講演会要旨集
    • Related Report
      2021 Annual Research Report
  • [Presentation] 可視・近赤外領域のハイパースペクトル反射計測と回帰学習器を用いた ダイズ個葉光合成の生化学モデルパラメータのハイスループットフェノタイピング2021

    • Author(s)
      熊谷悦史、木村建介、屋比久貴之、小木曽映里、平田香里、山田哲也、長谷川利拡
    • Organizer
      日本作物学会第251回講演会
    • Related Report
      2020 Annual Research Report
  • [Presentation] ハイパースペクトル反射計測によるダイズ地上部形質の高速評価手法の検討2020

    • Author(s)
      熊谷悦史, 屋比久貴之, 木村建介, 小木曽映里, 平田香里, 山田哲也, 長谷川利拡
    • Organizer
      日本農業気象学会2020年全国大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Assessing proximal sensing capabilities for high throughput estimation of genotypic variation in photosynthesis of soybean2018

    • Author(s)
      Etsushi Kumagai, Toshihiro Hasegawa
    • Organizer
      2018 AGU annual meeting
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research

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Published: 2018-04-23   Modified: 2024-01-30  

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