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Genome-wide model to regulate the wide diversity of fruit shape in persimmon

Research Project

Project/Area Number 18H02199
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 39030:Horticultural science-related
Research InstitutionOkayama University

Principal Investigator

Akagi Takashi  岡山大学, 環境生命科学学域, 研究教授 (50611919)

Project Period (FY) 2018-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥16,510,000 (Direct Cost: ¥12,700,000、Indirect Cost: ¥3,810,000)
Fiscal Year 2021: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Fiscal Year 2020: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2019: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2018: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Keywords果実 / バイオインフォマティクス / ゲノム進化 / 形状多様性 / カキ / 選択圧 / 共発現ネットワーク / 果実形状 / GWAS / 遺伝子倍化 / 新機能獲得 / 倍数体 / 果実形 / 倍数化 / 進化学 / 果樹 / トランスクリプトーム / 成熟期 / 進化 / ゲノムワイド解析 / 倍数性
Outline of Final Research Achievements

We here attempted to identify genetic factors and evolutionary mechanisms to drive fruit shape diversity, which is specific to persimmon cultivars, from a genome-wide viewpoint. The draft whole-genome in a wild relative close to cultivated persimmon (Diospyros lotus) was assembled. With this reference genome, we identified gene co-expression networks associated with the fruit shape diversity, quantified with principal components of elliptic Fourier descriptors. Some cytokinin-related transcription factors, including KNAT1, exhibited persimmon-specific expression fluctuation in fruit, which was not observed in other fruit crops. This persimmon specific expression behaviors may be a key to express dynamic fruit shape diversities amongst the cultivars.

Academic Significance and Societal Importance of the Research Achievements

「形」は作物の価値を決定する大きな要因であるとともに、その植物独自の進化過程を強く反映するものである。これまで葉や花といった器官における形の多様性研究はモデル植物を中心に活発に進められてきた。しかし「果実」器官の形状多様性については種間を横断する機構において遺伝子レベルでの共通性が無いことも多い。本研究におけるカキ果実の発現特異性の獲得機構は、この種特異的な形状多様性が生まれる根本的な要因に迫るものであり、将来的には、進化学的観点から見た際の系統特異的な果実進化の本質に至るものであると思われる。

Report

(5 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (4 results)

All 2021 2019 2018

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (3 results)

  • [Journal Article] Evolution of Lineage-Specific Gene Networks Underlying the Considerable Fruit Shape Diversity in Persimmon2019

    • Author(s)
      Haruka Maeda, Takashi Akagi, Noriyuki Onoue, Atsushi Kono, Ryutaro Tao
    • Journal Title

      Plant and Cell Physiology

      Volume: 60 Issue: 11 Pages: 2464-2477

    • DOI

      10.1093/pcp/pcz139

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] カキ平核無と枝変わり系統孝子丸の比較解析による果実形状決定機構の解明2021

    • Author(s)
      堀内綾乃, 増田佳苗, 松崎隆介, 尾上典之, 久保康隆, 牛島幸一郎, 赤木剛士
    • Organizer
      園芸学会 令和3年度秋季大会
    • Related Report
      2021 Annual Research Report
  • [Presentation] カキ品種の果実生育・成熟に関する倍数体用ゲノムワイドアソシエーション解析2019

    • Author(s)
      赤木剛士・増田佳苗・牛島幸一郎・久保康隆
    • Organizer
      園芸学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] カキ果実の形状多様性を制御する遺伝子ネットワーク2018

    • Author(s)
      前田春香・赤木剛士・尾上典之・河野淳・田尾龍太郎
    • Organizer
      園芸学会
    • Related Report
      2018 Annual Research Report

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Published: 2018-04-23   Modified: 2023-01-30  

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