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Development of single-molecule measurement with angstrom precision

Research Project

Project/Area Number 18H02418
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 43040:Biophysics-related
Research InstitutionInstitute for Molecular Science

Principal Investigator

IINO Ryota  分子科学研究所, 生命・錯体分子科学研究領域, 教授 (70403003)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥17,420,000 (Direct Cost: ¥13,400,000、Indirect Cost: ¥4,020,000)
Fiscal Year 2020: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2019: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2018: ¥6,630,000 (Direct Cost: ¥5,100,000、Indirect Cost: ¥1,530,000)
Keywords分子モーター / 1分子計測 / 光学顕微鏡 / 1分子イメージング
Outline of Final Research Achievements

We have developed an optical microscopic single-molecule method based on the scattering imaging of plasmonic metal nanoparticles, and achieved atomic-level (angstrom-level) localization precision and microsecond time resolution. In addition, the developed method has been successfully applied to linear and rotary molecular motors such as kinesin and V1-ATPase to elucidate their chemo-mechanical coupling mechanism and elementary process of motion in detail. Furthermore, we have developed a dual-color, high-speed/high-precision single-molecule measurement method using silver and gold nanoparticles as probes, and a method estimating chemical state-dependent free energy profile from the single-molecule trajectory of the movement of molecular motor.

Academic Significance and Societal Importance of the Research Achievements

生体1分子オングストローム計測法により、高度な機能を発現する生体分子機械の作動原理を原子レベルの位置決定精度で解明することが可能になり、生体分子モーターのエネルギー変換機構の多様性や普遍性が明らかとなりつつある。また本手法は、生体分子機械よりもずっと小さな人工分子機械の原子レベルの動きの可視化にも有用と考えられ、生物学のみならず化学分野における応用展開も期待される。さらに、デュアルカラー高速高精度1分子計測法は3色以上のマルチカラーに発展させることが可能であり、従来の蛍光イメージング代わる汎用的バイオイメージング技術となり得る可能性が期待される。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (17 results)

All 2020 2019 2018 Other

All Journal Article (5 results) (of which Peer Reviewed: 5 results,  Open Access: 3 results) Presentation (7 results) (of which Int'l Joint Research: 3 results,  Invited: 5 results) Remarks (5 results)

  • [Journal Article] Chemical-State-Dependent Free Energy Profile from Single-Molecule Trajectories of Biomolecular Motors: Application to Processive Chitinase2020

    • Author(s)
      Okazaki Kei-ichi、Nakamura Akihiko、Iino Ryota
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 124 Issue: 30 Pages: 6475-6487

    • DOI

      10.1021/acs.jpcb.0c02698

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystalline chitin hydrolase is a burnt-bridge Brownian motor2020

    • Author(s)
      Nakamura A, Okazaki K, Furuta T, Sakurai M, Ando J, Iino R
    • Journal Title

      Biophysics and Physicobiology

      Volume: 17 Issue: 0 Pages: 51-58

    • DOI

      10.2142/biophysico.BSJ-2020004

    • NAID

      130007872440

    • ISSN
      2189-4779
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] セラチア菌由来キチン加水分解酵素の運動機構2020

    • Author(s)
      中村彰彦,岡崎圭一,古田忠臣,櫻井実,飯野亮太
    • Journal Title

      応用糖質科学

      Volume: 10 Pages: 89-95

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Single-molecule analysis reveals rotational substeps and chemo-mechanical coupling scheme of Enterococcus hirae V1-ATPase2019

    • Author(s)
      Iida Tatsuya、Minagawa Yoshihiro、Ueno Hiroshi、Kawai Fumihiro、Murata Takeshi、Iino Ryota
    • Journal Title

      Journal of Biological Chemistry

      Volume: 294 Issue: 45 Pages: 17017-17030

    • DOI

      10.1074/jbc.ra119.008947

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Single-Nanoparticle Tracking with Angstrom Localization Precision and Microsecond Time Resolution2018

    • Author(s)
      Ando Jun、Nakamura Akihiko、Visootsat Akasit、Yamamoto Mayuko、Song Chihong、Murata Kazuyoshi、Iino Ryota
    • Journal Title

      Biophysical Journal

      Volume: 115 Issue: 12 Pages: 2413-2427

    • DOI

      10.1016/j.bpj.2018.11.016

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Performance of step-finding algorithm based on the Schwarz Information Criterion depends on noise and data points per dwell-time2020

    • Author(s)
      Monique Honsa, Kimitoshi Takeda, Akihiro Otomo, Hanjin Liu, Tomohiro Shima, Ryota Iino
    • Organizer
      The 58th Annual Meeting of the Biophysical Society of Japan
    • Related Report
      2020 Annual Research Report
  • [Presentation] Improvement of thermostability and catalytic activity of a PET degrading enzyme derived from metagenome database2020

    • Author(s)
      Akihiko Nakamura, Naoya Kobayashi, Takahiro Kosugi, Rie Koga, Nobuyasu Koga, Ryota Iino
    • Organizer
      The 58th Annual Meeting of the Biophysical Society of Japan
    • Related Report
      2020 Annual Research Report
  • [Presentation] Rotational Substeps and Chemo-Mechanical Coupling Scheme of Enterococcus hirae V1-ATPase Revealed by Single-Molecule Analysis2019

    • Author(s)
      Ryota Iino
    • Organizer
      Tokyo ATPase Workshop
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] High-speed single-molecule imaging analysis of protein molecular motors with plasmonic nanoprobes2018

    • Author(s)
      Ryota Iino
    • Organizer
      Seminar in IBS Center for Molecular Spectroscopy and Dynamics
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Processive chitihase is a Brownian monorail operated by fast catalysis after peeling a rail from chitin crystal2018

    • Author(s)
      Ryota Iino
    • Organizer
      Workshop on "Molecules, Materials, Devices and Systems"
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 生体・人工分子マシンの共通原理の理解を目指して2018

    • Author(s)
      飯野亮太
    • Organizer
      第15回AMO討論会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] プラズモニックナノプローブを用いた生体分子の時分割1分子イメージング2018

    • Author(s)
      飯野亮太
    • Organizer
      2018年度 物理学会秋季大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Remarks] 分子研飯野グループホームページ

    • URL

      https://groups.ims.ac.jp/organization/iino_g/index.html

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
  • [Remarks] 分子モーターの1方向性運動モデルの新規推定法の開発 ―キチナーゼの運動メカニズム解明につながる―

    • URL

      https://www.ims.ac.jp/news/2020/07/28_4729.html

    • Related Report
      2020 Annual Research Report
  • [Remarks] 回転分子モーターV1の化学力学エネルギー変換機構を解明(飯野グループ・飯田大学院生ら)

    • URL

      https://www.ims.ac.jp/news/2019/10/25_4457.html

    • Related Report
      2019 Annual Research Report
  • [Remarks] 自然科学研究機構 分子科学研究所 飯野グループ

    • URL

      https://groups.ims.ac.jp/organization/iino_g/index.html

    • Related Report
      2018 Annual Research Report
  • [Remarks] 光学顕微鏡で原子レベルの位置決定精度を達成(飯野グループら)

    • URL

      https://www.ims.ac.jp/news/2018/11/28_4134.html

    • Related Report
      2018 Annual Research Report

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Published: 2018-04-23   Modified: 2022-01-27  

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