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Understanding the core systems of organisms through analysis of gene functions in the minimal genome bacterium

Research Project

Project/Area Number 18H02433
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 43060:System genome science-related
Research InstitutionNational Institute of Advanced Industrial Science and Technology

Principal Investigator

Kakizawa Shigeyuki  国立研究開発法人産業技術総合研究所, 生命工学領域, 主任研究員 (10588669)

Project Period (FY) 2018-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥17,030,000 (Direct Cost: ¥13,100,000、Indirect Cost: ¥3,930,000)
Fiscal Year 2022: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Fiscal Year 2021: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Fiscal Year 2020: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Fiscal Year 2019: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2018: ¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Keywords細菌ゲノム / 必須遺伝子 / マイコプラズマ / 細菌 / ゲノム
Outline of Final Research Achievements

In this study, we tested inducible promoter systems and developed a system to comprehensively elucidate the functions of unknown genes using the minimal genome bacterium JCVI-syn3B. Specifically, we successfully introduced a CRISPR interference (CRISPRi) system capable of specific gene knockdown and confirmed that the tetracycline-inducible promoter system is the most effective. This system was applied to lots of functional unknown genes in JCVI-syn3B, establishing a procedure for gene function analysis. We obtained significant insights towards understanding the fundamental life functions of minimal genome bacteria.

Academic Significance and Societal Importance of the Research Achievements

本研究の意義は、最小の生命システムを持つミニマムゲノム細菌において、未知遺伝子の機能を網羅的に解析する基盤を構築した点と、新たなバイオテクノロジーの発展に寄与する可能性がある点にある。特に誘導プロモーター系とCRISPRi技術を用いることで、遺伝子発現の精密な制御を可能にした。これにより生命の基本システムを解析するための重要なツールを提供し、生命科学の基礎研究に貢献することが期待される。加えて、ミニマムゲノム細菌を用いた研究により、合成生物学において新たな応用の道を開く可能性がある。例えば、最小限の遺伝情報で機能する細胞を設計することで、効率的な生産システム等の開発につながることが期待される。

Report

(6 results)
  • 2023 Final Research Report ( PDF )
  • 2022 Annual Research Report
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (11 results)

All 2024 2023 2022 Other

All Int'l Joint Research (1 results) Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 2 results) Presentation (6 results) (of which Int'l Joint Research: 2 results,  Invited: 3 results) Book (2 results)

  • [Int'l Joint Research] J. Craig Venter Institute(米国)

    • Related Report
      2018 Annual Research Report
  • [Journal Article] Spiroplasma as facultative bacterial symbionts of stinkbugs2022

    • Author(s)
      Kakizawa Shigeyuki、Hosokawa Takahiro、Oguchi Kohei、Miyakoshi Kaori、Fukatsu Takema
    • Journal Title

      Frontiers in Microbiology

      Volume: 13 Pages: 1044771-1044771

    • DOI

      10.3389/fmicb.2022.1044771

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Reconstitution of a minimal motility system based on Spiroplasma swimming by two bacterial actins in a synthetic minimal bacterium2022

    • Author(s)
      Kiyama H, Kakizawa S, Sasajima Y, Tahara YO and Miyata M
    • Journal Title

      Science Advances

      Volume: 8 Issue: 48 Pages: eabo7490

    • DOI

      10.1126/sciadv.abo7490

    • URL

      https://ocu-omu.repo.nii.ac.jp/records/2020471

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] ミニマルセルを用いた生命機能の解析2024

    • Author(s)
      柿澤茂行
    • Organizer
      第18回日本ゲノム微生物学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] ミニマルセルを用いた細菌の高次機能の再構築2024

    • Author(s)
      柿澤茂行
    • Organizer
      日本農芸化学会2024年度大会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] ミニマルセルを用いた生命機能の解析2024

    • Author(s)
      柿澤茂行
    • Organizer
      シンポジウム「環境応答」
    • Related Report
      2022 Annual Research Report
  • [Presentation] ミニマルセル(最小ゲノム細菌)を用いた生命機能の解析2023

    • Author(s)
      柿澤茂行
    • Organizer
      大隅財団 微生物コンソーシアム
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Whole genome cloning of genome-reduced insect symbionts2023

    • Author(s)
      柿澤茂行
    • Organizer
      The 11th Wolbachia Conference
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Adaptive laboratory evolution of JCVI-syn3.0B to low temperature2023

    • Author(s)
      水谷雅希、古賀隆一、深津武馬、柿澤茂行
    • Organizer
      24th Biennial Congress of the International Organization for Mycoplasmology (IOM)
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Book] 未培養微生物研究の最新動向, "細菌の全ゲノムクローニングと未培養細菌への応用"2023

    • Author(s)
      水谷雅希, 古賀隆一, 深津武馬, 柿澤茂行
    • Total Pages
      264
    • Publisher
      株式会社シーエムシー出版
    • Related Report
      2022 Annual Research Report
  • [Book] 実験医学, "細菌の全ゲノム合成. "2023

    • Author(s)
      柿澤茂行
    • Total Pages
      133
    • Publisher
      羊土社
    • Related Report
      2022 Annual Research Report

URL: 

Published: 2018-04-23   Modified: 2025-01-30  

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