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Mechanisms for creating neomorphs in acquisition, loss, and convergence

Research Project

Project/Area Number 18H02446
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 44020:Developmental biology-related
Research InstitutionTohoku University

Principal Investigator

Tamura Koji  東北大学, 生命科学研究科, 教授 (70261550)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥17,550,000 (Direct Cost: ¥13,500,000、Indirect Cost: ¥4,050,000)
Fiscal Year 2020: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2019: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2018: ¥7,410,000 (Direct Cost: ¥5,700,000、Indirect Cost: ¥1,710,000)
Keywords収斂 / 獲得 / 新奇形質 / 共有派生形質 / 発生 / 進化 / 形態進化 / 形態形成
Outline of Final Research Achievements

The aim of this project was to demonstrate the concept that "morphogenetic mechanisms specific to a group of animals, in which common trans-regulatory sequences act, give rise to synapomorphy" in the evolutional process of acquisition, loss and convergence. Focusing on birds for which a wide range of embryos and whole genome sequences are available (as our own systems), a method was used in which candidate sequences and genes were narrowed down using a combination of comparative genome analysis and RNAseq. Functional analyses using multiple avian embryos and other vertebrate embryos was performed. We obtained and analyzed the trans-regulatory sequences and their neighboring genes that may have led the convergent web formation in birds. We also studied fish and proposed a novel hypothesis on the acquisition of a novel trait, fin, in vertebrates.

Academic Significance and Societal Importance of the Research Achievements

「特徴的な共有派生形質」「豊富なゲノム配列情報」「形態形成メカニズム解析系」が必要となる学術研究分野において、本研究では全ゲノム配列が解読されている種数が脊椎動物の中で最も多い動物群である「鳥類綱」を主に用いた。鳥類は、飛翔に特化した形態を固有に進化させているなど、特徴的な形質を多数もっており、本研究ではニワトリ胚に加え、複数種の鳥類胚を用いることで独自性の高い成果をもたらした。
本研究目的が達成されることで新しい概念が実証でき、それ自体意義が高い。さらに、固有かつ共通のゲノム配列と遺伝子発現解析から候補配列を絞り込み、胚を用いて候補遺伝子と配列の機能解析を行う、という方法論が構築できた。

Report

(4 results)
  • 2021 Final Research Report ( PDF )
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (16 results)

All 2022 2021 2020 2019 2018

All Journal Article (11 results) (of which Peer Reviewed: 11 results,  Open Access: 8 results) Presentation (5 results)

  • [Journal Article] Developmental independence of median fins from the larval fin fold revises their evolutionary origin.2022

    • Author(s)
      Kazuhide Miyamoto, Koichi Kawakami, Koji Tamura, Gembu Abe
    • Journal Title

      Scientific Reports

      Volume: 22 Issue: 1 Pages: 7521-7521

    • DOI

      10.1038/s41598-022-11180-1

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Thalidomide and its metabolite 5‐hydroxythalidomide induce teratogenicity via the cereblon neosubstrate PLZF2021

    • Author(s)
      Yamanaka Satoshi、Murai Hidetaka、Saito Daisuke、Abe Gembu、Tokunaga Etsuko、Iwasaki Takahiro、Takahashi Hirotaka、Takeda Hiroyuki、Suzuki Takayuki、Shibata Norio、Tamura Koji、Sawasaki Tatsuya
    • Journal Title

      The EMBO Journal

      Volume: 40 Issue: 4 Pages: 1-1

    • DOI

      10.15252/embj.2020105375

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Envelopment by endothelial cells initiates translocation of avian primordial germ cell into vascular tissue2021

    • Author(s)
      Murai Hidetaka、Shibuya Minami、Kishita Ryohei、Sunase Chihiro、Tamura Koji、Saito Daisuke
    • Journal Title

      Developmental Dynamics

      Volume: - Issue: 10 Pages: 1410-1419

    • DOI

      10.1002/dvdy.332

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Light‐induced local gene expression in primary chick cell culture system2021

    • Author(s)
      Kitajima Keiichi、Kawahira Naofumi、Lee Sang‐Woo、Tamura Koji、Morishita Yoshihiro、Ohtsuka Daisuke
    • Journal Title

      Development, Growth & Differentiation

      Volume: 63 Issue: 3 Pages: 189-198

    • DOI

      10.1111/dgd.12721

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Insights regarding skin regeneration in non-amniote vertebrates: Skin regeneration without scar formation and potential step-up to a higher level of regeneration2020

    • Author(s)
      Abe Gembu、Hayashi Toshinori、Yoshida Keigo、Yoshida Takafumi、Kudoh Hidehiro、Sakamoto Joe、Konishi Ayumi、Kamei Yasuhiro、Takeuchi Takashi、Tamura Koji、Yokoyama Hitoshi
    • Journal Title

      Seminars in Cell & Developmental Biology

      Volume: 100 Pages: 109-121

    • DOI

      10.1016/j.semcdb.2019.11.014

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Regrowth of zebrafish caudal fin regeneration is determined by the amputated length2020

    • Author(s)
      Uemoto Toshiaki、Abe Gembu、Tamura Koji
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1

    • DOI

      10.1038/s41598-020-57533-6

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Zebrafish can regenerate endoskeleton in larval pectoral fin but the regenerative ability declines2020

    • Author(s)
      Yoshida Keigo、Kawakami Koichi、Abe Gembu、Tamura Koji
    • Journal Title

      Developmental Biology

      Volume: 463 Issue: 2 Pages: 110-123

    • DOI

      10.1016/j.ydbio.2020.04.010

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Pattern of fin rays along the antero-posterior axis based on their connection to distal radials2019

    • Author(s)
      Hamada Hiroki、Uemoto Toshiaki、Tanaka Yoshitaka、Honda Yuki、Kitajima Keiichi、Umeda Tetsuya、Kawakami Atsushi、Shinya Minori、Kawakami Koichi、Tamura Koji、Abe Gembu
    • Journal Title

      Zoological Letters

      Volume: 5 Issue: 1

    • DOI

      10.1186/s40851-019-0145-z

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Homeobox code model of heterodont tooth in mammals revised2019

    • Author(s)
      Wakamatsu Yoshio、Egawa Shiro、Terashita Yukari、Kawasaki Hiroshi、Tamura Koji、Suzuki Kunihiro
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 12865-12865

    • DOI

      10.1038/s41598-019-49116-x

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Morphogenetic mechanism of the acquisition of the dinosaur-type acetabulum2018

    • Author(s)
      Egawa Shiro、Saito Daisuke、Abe Gembu、Tamura Koji
    • Journal Title

      Royal Society Open Science

      Volume: 5 Issue: 10 Pages: 180604-180604

    • DOI

      10.1098/rsos.180604

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Flight feather development: its early specialization during embryogenesis2018

    • Author(s)
      Kondo Mao、Sekine Tomoe、Miyakoshi Taku、Kitajima Keiichi、Egawa Shiro、Seki Ryohei、Abe Gembu、Tamura Koji
    • Journal Title

      Zoological Letters

      Volume: 4 Issue: 1

    • DOI

      10.1186/s40851-017-0085-4

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] ゲノム比較と発生学的手法を用いたアプローチから脊椎動物の形態進化を考察する2019

    • Author(s)
      関谷洸、宮腰拓、米井小百合、阿部玄武、田中良和、牧野能士、田村宏治
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Comparative genomics and developmental biological approaches on morphological evolution in vertebrates.2019

    • Author(s)
      関谷洸、宮腰拓、米井小百合、阿部玄武、田中良和、牧野能士、田村宏治
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Comparative genomics and developmental biological approaches on morphological evolution in vertebrates2019

    • Author(s)
      関谷洸, 宮腰拓, 米井小百合, 阿部玄武, 田中良和, 牧野能士, 田村宏治
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 鳥類始原生殖細胞が持つ微絨毛の機能解析2019

    • Author(s)
      玉木恵, 村井英隆, 米井小百合, 阿部玄武, 田村宏治, 齋藤大介
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ゲノム比較と発生学的手法を用いたアプローチから脊椎動物の形態進化を考察する2019

    • Author(s)
      関谷洸, 宮腰拓, 米井小百合, 阿部玄武, 田中良和, 牧野能士, 田村宏治
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report

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Published: 2018-04-23   Modified: 2023-01-30  

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