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How plants acquired the membrane trafficking system connecting inside and outside cells?

Research Project

Project/Area Number 18H02470
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 44030:Plant molecular biology and physiology-related
Research InstitutionNational Institute for Basic Biology

Principal Investigator

Ueda Takashi  基礎生物学研究所, 細胞動態研究部門, 教授 (10311333)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥17,420,000 (Direct Cost: ¥13,400,000、Indirect Cost: ¥4,020,000)
Fiscal Year 2020: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2019: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2018: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Keywordsエンドサイトーシス / エキソサイトーシス / クラスリン / ANTHドメイン / シロイヌナズナ / ゼニゴケ / RAB GTPase / エンドサイトーシス経路 / 分泌経路 / PICALM / 膜交通 / 多様化 / Rab GTPase / ANTH / exocyst / 細胞膜 / RAB / SNARE / 分泌
Outline of Final Research Achievements

Through functional analyses of endocytosis- and exocytosis-related molecules that have significantly diversified during land plant evolution, we attempted to elucidate the molecular mechanisms of membrane trafficking underpinning the plasma membrane function and reconstruct the evolutionary path of diversification of exocytic and endocytic trafficking. We found that the functions of the PICALM family, which act as clathrin adapters, have diversified during land plant evolution to play important roles in various developmental stages of plants, such as sexual reproduction and vegetative growth by being involved in endocytosis of distinct sets of proteins. We also found that RAB11 and RAB8, both of which are expected to act in the secretory pathway, may function by forming a cascade in a late step of secretion.

Academic Significance and Societal Importance of the Research Achievements

細胞の内側から外側へ,あるいは外側から内側へと物質を輸送する仕組みは,生命を維持するために欠かせないものです.この仕組みは進化の過程でそれぞれの生物ごとに変化し,洗練されてきました.この研究では,この進化の過程を植物を用いて明らかにすることで,現在の植物細胞内の物質輸送の仕組みがどのように出来上がってきたのかを明らかにしました.

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (35 results)

All 2021 2020 2019 2018 Other

All Int'l Joint Research (4 results) Journal Article (24 results) (of which Int'l Joint Research: 11 results,  Peer Reviewed: 24 results,  Open Access: 18 results) Presentation (4 results) (of which Int'l Joint Research: 4 results,  Invited: 4 results) Remarks (3 results)

  • [Int'l Joint Research] Heidelberg University/Max Planck Institute/Osnabruck University(ドイツ)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] Universidad Nacional del Litoral(アルゼンチン)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] Monash University/The University of Melbourne(オーストラリア)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] Heidelberg University(ドイツ)

    • Related Report
      2018 Annual Research Report
  • [Journal Article] Identification of genes involved in <i>Meloidogyne incognita</i>-induced gall formation processes in <i>Arabidopsis thaliana</i>2021

    • Author(s)
      Suzuki Reira、Ueda Takashi、Wada Takuji、Ito Masaki、Ishida Takashi、Sawa Shinichiro
    • Journal Title

      Plant Biotechnology

      Volume: 38 Issue: 1 Pages: 1-8

    • DOI

      10.5511/plantbiotechnology.20.0716a

    • NAID

      130008002844

    • ISSN
      1342-4580, 1347-6114
    • Year and Date
      2021-03-25
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Temperature-dependent fasciation mutants provide a link between mitochondrial RNA processing and lateral root morphogenesis2021

    • Author(s)
      Otsuka Kurataka、Mamiya Akihito、Konishi Mineko、Nozaki Mamoru、Kinoshita Atsuko、Tamaki Hiroaki、Arita Masaki、Saito Masato、Yamamoto Kayoko、Hachiya Takushi、Noguchi Ko、Ueda Takashi、Yagi Yusuke、Kobayashi Takehito、Nakamura Takahiro、Sato Yasushi、Hirayama Takashi、Sugiyama Munetaka
    • Journal Title

      eLife

      Volume: 10

    • DOI

      10.7554/elife.61611

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cargo sorting zones in the trans-Golgi network visualized by super-resolution confocal live imaging microscopy in plants2021

    • Author(s)
      Shimizu Yutaro、Takagi Junpei、Ito Emi、Ito Yoko、Ebine Kazuo、Komatsu Yamato、Goto Yumi、Sato Mayuko、Toyooka Kiminori、Ueda Takashi、Kurokawa Kazuo、Uemura Tomohiro、Nakano Akihiko
    • Journal Title

      Nature Communications

      Volume: 12 Issue: 1 Pages: 1901-1901

    • DOI

      10.1038/s41467-021-22267-0

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Oil Body Formation in Marchantia polymorpha Is Controlled by MpC1HDZ and Serves as a Defense against Arthropod Herbivores2020

    • Author(s)
      Romani F., Banic E., Florent S.N., Kanazawa T., Goodger J.Q.D., Mentink R.A., Dierschke T., Zachgo S., Ueda T., Bowman J.L., Tsiantis M., Moreno J.E.
    • Journal Title

      Current Biology

      Volume: 30 Issue: 14 Pages: 2815-2828.e8

    • DOI

      10.1016/j.cub.2020.05.081

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Characterization of ancestral myosin XI from Marchantia polymorpha by heterologous expression in Arabidopsis thaliana2020

    • Author(s)
      Duan Zhongrui、Tanaka Misato、Kanazawa Takehiko、Haraguchi Takeshi、Takyu Akiko、Era Atsuko、Ueda Takashi、Ito Kohji、Tominaga Motoki
    • Journal Title

      The Plant Journal

      Volume: 104 Issue: 2 Pages: 460-473

    • DOI

      10.1111/tpj.14937

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Longin R-SNARE is retrieved from the plasma membrane by ANTH domain-containing proteins in Arabidopsis2020

    • Author(s)
      Fujimoto Masaru、Ebine Kazuo、Nishimura Kohji、Tsutsumi Nobuhiro、Ueda Takashi
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 117 Issue: 40 Pages: 25150-25158

    • DOI

      10.1073/pnas.2011152117

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Arabidopsis V-ATPase is localized to the TGN/EE via a seed plant-specific motif2020

    • Author(s)
      Lupanga U., Rohrich R., Askani J., Hilmer S., Kiefer C., Krebs M., Kanazawa T., Ueda T., Schumacher K.
    • Journal Title

      eLife

      Volume: 9

    • DOI

      10.7554/elife.60568

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The liverwort oil body is formed by redirection of the secretory pathway2020

    • Author(s)
      Kanazawa T., Morinaka H., Ebine K., Shimada T.L., Ishida S., Minamino N., Yamaguchi K., Shigenobu S., Kohchi T., Nakano A., Ueda T.
    • Journal Title

      Nature Communications

      Volume: 11 Issue: 1 Pages: 6152-6152

    • DOI

      10.1038/s41467-020-19978-1

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Role of Autophagy in Male Reproductive Processes in Land Plants2020

    • Author(s)
      Norizuki Takuya、Minamino Naoki、Ueda Takashi
    • Journal Title

      Frontiers in Plant Science

      Volume: 11 Pages: 756-756

    • DOI

      10.3389/fpls.2020.00756

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Purification and Interaction Analysis of a Plant-Specific RAB5 Effector by In Vitro Pull-Down Assay2020

    • Author(s)
      Ito Emi、Choi Seung-won、Ueda Takashi
    • Journal Title

      Methods in Molecular Biology

      Volume: 2177 Pages: 183-197

    • DOI

      10.1007/978-1-0716-0767-1_15

    • ISBN
      9781071607664, 9781071607671
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Deep Imaging Analysis in VISUAL Reveals the Role of YABBY Genes in Vascular Stem Cell Fate Determination2020

    • Author(s)
      Nurani Alif Meem、Ozawa Yasuko、Furuya Tomoyuki、Sakamoto Yuki、Ebine Kazuo、Matsunaga Sachihiro、Ueda Takashi、Fukuda Hiroo、Kondo Yuki
    • Journal Title

      Plant and Cell Physiology

      Volume: 61 Issue: 2 Pages: 255-264

    • DOI

      10.1093/pcp/pcaa002

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Enrichment of Phosphatidylinositol 4,5-Bisphosphate in the Extra-Invasive Hyphal Membrane Promotes Colletotrichum Infection of Arabidopsis thaliana2019

    • Author(s)
      Shimada Takashi L、Betsuyaku Shigeyuki、Inada Noriko、Ebine Kazuo、Fujimoto Masaru、Uemura Tomohiro、Takano Yoshitaka、Fukuda Hiroo、Nakano Akihiko、Ueda Takashi
    • Journal Title

      Plant and Cell Physiology

      Volume: 60 Issue: 7 Pages: 1514-1524

    • DOI

      10.1093/pcp/pcz058

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Marchantia polymorpha, a New Model Plant for Autophagy Studies2019

    • Author(s)
      Norizuki T., Kanazawa T., Minamino N., Tsukaya H., Ueda T.
    • Journal Title

      Frontiers in Plant Science

      Volume: 10 Pages: 935-935

    • DOI

      10.3389/fpls.2019.00935

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The RopGEF KARAPPO Is Essential for the Initiation of Vegetative Reproduction in Marchantia polymorpha2019

    • Author(s)
      Hiwatashi T., Goh H., Yasui Y., Koh L.Q., Takami H., Kajikawa M., Kirita H., Kanazawa T., Minamino N., Togawa T., Sato M., Wakazaki M., Yamaguchi K., Shigenobu S., Fukaki H., Mimura T., Toyooka K., Sawa S., Yamato K.T.,Ueda T., Urano D., Kohchi T., Ishizaki K.
    • Journal Title

      Current Biology

      Volume: 29 Issue: 20 Pages: 3525-3531

    • DOI

      10.1016/j.cub.2019.08.071

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Protamines from liverwort are produced by posttranslational cleavage and C-terminal di-aminopropanelation of several male germ-specific H1 histones2019

    • Author(s)
      D'Ippolito, RA., Minamino, N, Rivera-Casas, C., Cheema, MS, Bai, DL., Kasinsky, HE., Shabanowitz, J., Eirin-Lopez, JM., Ueda, T., Hunt, DF., and Ausio, J.
    • Journal Title

      J. Biol. Chem.

      Volume: 未定 Issue: 44 Pages: 16364-16373

    • DOI

      10.1074/jbc.ra119.010316

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] RAB GTPases and their effectors in plant endosomal transport2019

    • Author(s)
      1)Minamino, N. and Ueda, T.
    • Journal Title

      Curr. Opin. Plant Biol.

      Volume: 52 Pages: 61-68

    • DOI

      10.1016/j.pbi.2019.07.007

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A whole-cell electron tomography model of vacuole biogenesis in Arabidopsis root cells2018

    • Author(s)
      Cui Yong、Cao Wenhan、He Yilin、Zhao Qiong、Wakazaki Mayumi、Zhuang Xiaohong、Gao Jiayang、Zeng Yonglun、Gao Caiji、Ding Yu、Wong Hiu Yan、Wong Wing Shing、Lam Ham Karen、Wang Pengfei、Ueda Takashi、Rojas-Pierce Marcela、Toyooka Kiminori、Kang Byung-Ho、Jiang Liwen
    • Journal Title

      Nature Plants

      Volume: 5 Issue: 1 Pages: 95-105

    • DOI

      10.1038/s41477-018-0328-1

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A Golgi-Released Subpopulation of the Trans-Golgi Network Mediates Protein Secretion in Arabidopsis2018

    • Author(s)
      Uemura Tomohiro、Nakano Ryohei Thomas、Takagi Junpei、Wang Yiming、Kramer Katharina、Finkemeier Iris、Nakagami Hirofumi、Tsuda Kenichi、Ueda Takashi、Schulze-Lefert Paul、Nakano Akihiko
    • Journal Title

      Plant Physiology

      Volume: 179 Issue: 2 Pages: 519-532

    • DOI

      10.1104/pp.18.01228

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] RAB GTPases in the Basal Land Plant Marchantia polymorpha2018

    • Author(s)
      Minamino Naoki、Kanazawa Takehiko、Era Atsuko、Ebine Kazuo、Nakano Akihiko、Ueda Takashi
    • Journal Title

      Plant Cell Phys.

      Volume: in press Issue: 4 Pages: 850-861

    • DOI

      10.1093/pcp/pcy027

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Distinct sets of tethering complexes, SNARE complexes, and Rab GTPases mediate membrane fusion at the vacuole in Arabidopsis2018

    • Author(s)
      Takemoto Kodai、Ebine Kazuo、Askani Jana Christin、Kruger Falco、Gonzalez Zaida Andres、Ito Emi、Goh Tatsuaki、Schumacher Karin、Nakano Akihiko、Ueda Takashi
    • Journal Title

      Proc Natl Acad Sci USA.

      Volume: 115 Issue: 10

    • DOI

      10.1073/pnas.1717839115

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Integration of two RAB5 groups during endosomal transport in plants2018

    • Author(s)
      Ito, E., Ebine, K., Choi, S., Uemura, T., Nakano, A. and Ueda, T.
    • Journal Title

      eLife

      Volume: 7

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Involvement of S-type anion channels in disease resistance against an oomycete pathogen in Arabidopsis seedling2018

    • Author(s)
      Kurusu, T., Mitsuka, D., Yagi, C., Kitahata, N., Tsutsui, T., Ueda, T., Yamamoto, Y., Negi, J., Iba, K., Betsuyaku, S., Kuchitsu, K.
    • Journal Title

      Commun. Integr. Biol.

      Volume: 11 Pages: 1-6

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Transcriptional switch for programmed cell death in pith parenchyma of sorghum stems.2018

    • Author(s)
      Fujimoto M, Sazuka T, Oda Y, Kawahigashi H, Wu J, Takanashi H, Ohnishi T, Yoneda JI, Ishimori M, Kajiya-Kanegae H, Hibara KI, Ishizuna F, Ebine K, Ueda T, Tokunaga T, Iwata H, Matsumoto T, Kasuga S, Yonemaru JI, Tsutsumi N
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America

      Volume: 115 Issue: 37

    • DOI

      10.1073/pnas.1807501115

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] ANTH domain-containing proteins are required for the pollen tube plasma membrane integrity via recycling ANXUR kinases2018

    • Author(s)
      Muro Keita、Matsuura-Tokita Kumi、Tsukamoto Ryoko、Kanaoka Masahiro M.、Ebine Kazuo、Higashiyama Tetsuya、Nakano Akihiko、Ueda Takashi
    • Journal Title

      Communications Biology

      Volume: 1 Issue: 1 Pages: 152-152

    • DOI

      10.1038/s42003-018-0158-8

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] How Plants acquired new organelles -Lessons from Marchantia2020

    • Author(s)
      Takashi Ueda
    • Organizer
      International Webinar Series: From Cellular dynamics to Morphology
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Organelle functions and membrane trafficking in plant cells2019

    • Author(s)
      Takashi Ueda
    • Organizer
      EMBO practical course
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Adaptor proteins involved in clathrin-mediated endocytosis in plant cells2018

    • Author(s)
      Takashi Ueda
    • Organizer
      CoB workshop “Cellular gateways: expanding the role of endocytosis in plant development”
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Roles and regulation of membrane traffic in spermatogenesis of Marchantia polymorpha2018

    • Author(s)
      Takashi Ueda
    • Organizer
      EMBO workshop “New shores in land plant evolution”
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Remarks]

    • URL

      https://www.nibb.ac.jp/pressroom/news/2020/09/22.html

    • Related Report
      2020 Annual Research Report
  • [Remarks]

    • URL

      https://www.nibb.ac.jp/en/pressroom/news/2020/12/01.html

    • Related Report
      2020 Annual Research Report
  • [Remarks]

    • URL

      https://www.nibb.ac.jp/pressroom/news/2020/12/01.html

    • Related Report
      2020 Annual Research Report

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Published: 2018-04-23   Modified: 2022-01-27  

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