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Genome editing reveals the mechanism of Drosophila pigmentation pattern formation

Research Project

Project/Area Number 18H02486
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 45020:Evolutionary biology-related
Research InstitutionHokkaido University

Principal Investigator

Koshikawa Shigeyuki  北海道大学, 地球環境科学研究院, 教授 (30714498)

Project Period (FY) 2018-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥17,160,000 (Direct Cost: ¥13,200,000、Indirect Cost: ¥3,960,000)
Fiscal Year 2022: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Fiscal Year 2021: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Fiscal Year 2020: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2019: ¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2018: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Keywords進化 / 発生 / ショウジョウバエ / 模様 / 着色 / cis制御領域 / ゲノム編集
Outline of Final Research Achievements

In this study, we aimed to identify all the major genes involved in wing pigmentation pattern formation in Drosophila guttifera and analyze gene function to understand the mechanism of pattern formation. By performing transcriptome analysis of small regions from the pupal wings, we were able to identify a group of genes whose expression was high (or low) in the regions where pigmentation occurs and which are under the control of wingless gene. We analyzed the functions of some of these genes in relation to pigmentation by genome editing. We also developed a method to analyze gene functions using the GAL4/UAS system. To clarify the gene regulatory network that controls pigmentation, we analyzed the function of enhancers that regulate the species-specific expression of wingless gene.

Academic Significance and Societal Importance of the Research Achievements

模様の形成機構の研究は、それ自体のみならず、組織のパターニングの原理や、表現型進化の理解に大きく貢献してきた。本研究の成果は、模様がどのように形成されるかを、ある一種の生物においてより正確に理解する試みである。さらに、模様がない近縁種と比べて、どのような遺伝的な変化が模様の進化を引き起こすのかを明らかにした。

Report

(6 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (47 results)

All 2023 2022 2021 2020 2019 2018

All Journal Article (18 results) (of which Int'l Joint Research: 4 results,  Open Access: 9 results,  Peer Reviewed: 8 results) Presentation (28 results) (of which Int'l Joint Research: 7 results,  Invited: 2 results) Book (1 results)

  • [Journal Article] Thermal plasticity of wing spot size in Drosophila guttifera: investigating the relevance to Wingless morphogen2023

    • Author(s)
      Yuichi Fukutomi, Aya Takahashi, Shigeyuki Koshikawa
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2023.01.09.523128

    • Related Report
      2022 Annual Research Report
    • Open Access / Int'l Joint Research
  • [Journal Article] Cis-regulatory evolution that caused change in wingless expression pattern associated with wing pigmentation pattern of Drosophila2023

    • Author(s)
      Takumi Karasawa, Namiho Saito, Shigeyuki Koshikawa
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2023.03.01.530703

    • Related Report
      2022 Annual Research Report
    • Open Access
  • [Journal Article] Photoreceptor genes in a trechine beetle, Trechiama kuznetsovi, living in the upper hypogean zone2023

    • Author(s)
      Takuma Niida, Yuto Terashima, Hitoshi Aonuma, Shigeyuki Koshikawa
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2023.02.28.530396

    • Related Report
      2022 Annual Research Report
  • [Journal Article] 特集 形態形成の統合的理解 Ⅳ.多様な生物種に学ぶ 昆虫の翅模様の進化発生生物学2022

    • Author(s)
      古関将斗, 越川滋行
    • Journal Title

      生体の科学

      Volume: 73 Issue: 4 Pages: 364-367

    • DOI

      10.11477/mf.2425201537

    • ISSN
      0370-9531, 1883-5503
    • Year and Date
      2022-08-15
    • Related Report
      2022 Annual Research Report
  • [Journal Article] ショウジョウバエの翅の模様形成メカニズムとその進化2022

    • Author(s)
      柄澤匠, 越川滋行
    • Journal Title

      科学

      Volume: 92 Pages: 992-996

    • Related Report
      2022 Annual Research Report
  • [Journal Article] Construction of a massive genetic resource by transcriptome sequencing and genetic characterization of Megasyllis nipponica (Annelida: Syllidae)2022

    • Author(s)
      Y Hayashi, K Oguchi, M Nakamura, S Koshikawa, T Miura
    • Journal Title

      Genes & Genetic Systems

      Volume: 97 Pages: 153-166

    • Related Report
      2022 Annual Research Report
    • Open Access
  • [Journal Article] Hormone-related genes heterochronically and modularly regulate neotenic differentiation in termites2022

    • Author(s)
      Oguchi Kohei、Koshikawa Shigeyuki、Miura Toru
    • Journal Title

      Developmental Biology

      Volume: 485 Pages: 70-79

    • DOI

      10.1016/j.ydbio.2022.02.012

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DrosoPhyla: Resources for Drosophilid Phylogeny and Systematics2021

    • Author(s)
      Finet Cedric、Kassner Victoria A、Carvalho Antonio B、Chung Henry、Day Jonathan P、Day Stephanie、Delaney Emily K、De Re Francine C、Dufour Heloise D、Dupim Eduardo、Izumitani Hiroyuki F、Gauterio Thaisa B、Justen Jessa、Katoh Toru、Kopp Artyom、Koshikawa Shigeyuki、et al.
    • Journal Title

      Genome Biology and Evolution

      Volume: 13 Issue: 8

    • DOI

      10.1093/gbe/evab179

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The color pattern inducing gene wingless is expressed in specific cell types of campaniform sensilla of a polka-dotted fruit fly, Drosophila guttifera2021

    • Author(s)
      Masato Koseki, Nobuaki K. Tanaka, Shigeyuki Koshikawa
    • Journal Title

      Development Genes and Evolution

      Volume: - Issue: 3-4 Pages: 85-93

    • DOI

      10.1007/s00427-021-00674-z

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] No evidence for contribution of sexually monomorphic wing pigmentation pattern to mate choice in Drosophila guttifera2021

    • Author(s)
      Takuma Niida, Shigeyuki Koshikawa
    • Journal Title

      Ethology

      Volume: - Issue: 7 Pages: 527-536

    • DOI

      10.1111/eth.13157

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transcriptome analysis reveals wingless regulates neural development and signaling genes in the region of wing pigmentation of a polka-dotted fruit fly.2021

    • Author(s)
      Yuichi Fukutomi, Shu Kondo, Atsushi Toyoda, Shuji Shigenobu, Shigeyuki Koshikawa
    • Journal Title

      The FEBS journal

      Volume: 288 Issue: 1 Pages: 99-110

    • DOI

      10.1111/febs.15338

    • NAID

      120007181830

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The making of transgenic Drosophila guttifera2020

    • Author(s)
      Mujeeb Shittu, Tessa Steenwinkel, Shigeyuki Koshikawa, Thomas Werner
    • Journal Title

      Methods and Protocols

      Volume: 3 Issue: 2 Pages: 31-31

    • DOI

      10.3390/mps3020031

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Heloise D. Dufour, Shigeyuki Koshikawa, Cedric Finet2020

    • Author(s)
      Temporal flexibility of gene regulatory network underlies a novel wing pattern in flies
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America

      Volume: 117 Issue: 21 Pages: 11589-11596

    • DOI

      10.1073/pnas.2002092117

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Enhancer functions underlying morphological diversity2020

    • Author(s)
      Takayuki Suzuki, Shigeyuki Koshikawa
    • Journal Title

      Development, Growth & Differentiation

      Volume: 62 Issue: 5 Pages: 263-264

    • DOI

      10.1111/dgd.12685

    • NAID

      120007042005

    • Related Report
      2020 Annual Research Report
    • Open Access
  • [Journal Article] Evolution of wing pigmentation in Drosophila: Diversity, physiological regulation, and cis-regulatory evolution2020

    • Author(s)
      Koshikawa,S
    • Journal Title

      Development, Growth & Differentiation

      Volume: - Issue: 5 Pages: 269-278

    • DOI

      10.1111/dgd.12661

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transcriptome analysis reveals evolutionary co-option of neural development and signaling genes for the wing pigmentation pattern of the polka-dotted fruit fly2020

    • Author(s)
      Yuichi Fukutomi, Shu Kondo, Atsushi Toyoda, Shuji Shigenobu, Shigeyuki Koshikawa
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2020.01.09.899864

    • Related Report
      2019 Annual Research Report
    • Open Access
  • [Journal Article] ハエの翅の模様の機能を考える2019

    • Author(s)
      丹伊田拓磨, 越川滋行
    • Journal Title

      昆虫と自然

      Volume: 54 Pages: 36-39

    • Related Report
      2019 Annual Research Report
  • [Journal Article] 昆虫の模様形成研究の現在とこれから2018

    • Author(s)
      福冨雄一、越川滋行
    • Journal Title

      蚕糸・昆虫バイオテック

      Volume: 87 Pages: 95-102

    • NAID

      130007722526

    • Related Report
      2018 Annual Research Report
  • [Presentation] ミズタマショウジョウバエの翅の種特異的な模様の獲得における制御配列の進化と既存配列の転用2023

    • Author(s)
      柄澤匠, 齊藤奈美歩, 越川滋行
    • Organizer
      日本動物学会 北海道支部 第67回大会(旭川市公民館木楽輪)
    • Related Report
      2022 Annual Research Report
  • [Presentation] ミズタマショウジョウバエにおけるGal4/UASシステムの開発2023

    • Author(s)
      古関将斗, 越川滋行
    • Organizer
      日本動物学会 北海道支部 第67回大会(旭川市公民館木楽輪)
    • Related Report
      2022 Annual Research Report
  • [Presentation] Development of Gal4/UAS system for elucidating the mechanism of the wing color pattern formation of Drosophila guttifera2023

    • Author(s)
      Masato Koseki, Shigeyuki Koshikawa
    • Organizer
      64th Annual Drosophila Research Conference
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Pre-existing Mad binding site is required for novel expression pattern of wingless in Drosophila guttifera pupal wing2023

    • Author(s)
      Takumi Karasawa, Namiho Saito, Shigeyuki Koshikawa
    • Organizer
      64th Annual Drosophila Research Conference
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ミズタマショウジョウバエの翅の新しい模様形成に必要なcis制御配列の特定2022

    • Author(s)
      柄澤匠, 齊藤奈美歩, 越川滋行
    • Organizer
      日本動物学会第93回早稲田大会(口頭発表)
    • Related Report
      2022 Annual Research Report
  • [Presentation] cis制御領域におけるSmadの結合配列の獲得が新しい遺伝子発現のパターンを生み出した2022

    • Author(s)
      柄澤 匠, 齊藤奈美歩, 越川滋行
    • Organizer
      日本進化学会年大会 第24回沼津大会 ポスター発表
    • Related Report
      2022 Annual Research Report
  • [Presentation] 模様形成遺伝子winglessを発現する神経組織の構成細胞の特定2021

    • Author(s)
      古関将斗, 越川滋行
    • Organizer
      日本進化学会第23回オンライン大会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Winglessモルフォゲンはどのようにミズタマショウジョウバエの模様を形成するのか?2021

    • Author(s)
      福冨雄一, 重信秀治, 越川滋行
    • Organizer
      日本動物学会第92回オンライン米子大会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 神経組織の構成細胞における遺伝子発現の進化がもたらしたショウジョウバエの水玉模様2021

    • Author(s)
      古関 将斗, 田中 暢明, 越川 滋行
    • Organizer
      日本動物学会第92回オンライン米子大会
    • Related Report
      2021 Annual Research Report
  • [Presentation] ミズタマショウジョウバエの翅の模様、形成メカニズムと機能2021

    • Author(s)
      越川滋行, 古関将斗, 丹伊田拓磨, 福冨雄一
    • Organizer
      日本遺伝学会第93回大会オンライン東京大会
    • Related Report
      2021 Annual Research Report
  • [Presentation] ミズタマショウジョウバエを用いた Wingless モルフォゲンによる模様形成機構の解析2021

    • Author(s)
      福冨雄一, 重信秀治, 越川滋行
    • Organizer
      日本遺伝学会第93回大会オンライン東京大会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 野生種ショウジョウバエにおけるゲノム編集と模様研究への適用2021

    • Author(s)
      越川滋行
    • Organizer
      日本動物学会北海道支部主催2021年度公開シンポジウム
    • Related Report
      2021 Annual Research Report
  • [Presentation] ミズタマショウジョウバエの遺伝子変異系統を用いた模様の機能に関する研究2021

    • Author(s)
      丹伊田 拓磨, 越川 滋行
    • Organizer
      第65回日本応用動物昆虫学会大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Two types of cells composing a campaniform sensillum express the patterning gene wingless in pupal wings of Drosophila guttifera.2021

    • Author(s)
      Masato Koseki, Nobuaki Tanaka, Shigeyuki Koshikawa
    • Organizer
      62nd Annual Drosophila Research Conference
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ミズタマショウジョウバエを用いた模様形成遺伝子ネットワークの探索2020

    • Author(s)
      福冨雄一, 重信秀治, 越川滋行
    • Organizer
      日本動物学会第91回大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] ミズタマショウジョウバエの模様形成遺伝子winglessは、蛹期の翅において鐘状感覚子のどの細胞で発現しているのか?2020

    • Author(s)
      古関将斗, 越川滋行
    • Organizer
      日本動物学会第91回大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] ミズタマショウジョウバエ胸部における模様形成メカニズムの探索2020

    • Author(s)
      矢野根智広, 越川滋行
    • Organizer
      日本動物学会第91回大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Which cell type of campaniform sensilla expresses the patterning gene wingless in pupal wings of Drosophila guttifera?2020

    • Author(s)
      古関将斗, 越川滋行
    • Organizer
      日本進化学会第22回オンライン大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Pigmentation pattern formation in Drosophila guttifera2020

    • Author(s)
      Shigeyuki Koshikawa, Keiji Matsumoto, Wataru Yamamoto, Yuichi Fukutomi
    • Organizer
      5th Asia-Pacific Drosophila Research Conference
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Thoughts on function of Drosophila guttifera wing color pattern2020

    • Author(s)
      Takuma Niida, Shigeyuki Koshikawa
    • Organizer
      5th Asia-Pacific Drosophila Research Conference
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Transcriptome analysis of Drosophila guttifera to elucidate the gene network related to color pattern formation2020

    • Author(s)
      Yuichi Fukutomi, Shuji Shigenobu, Shigeyuki Koshikawa
    • Organizer
      5th Asia-Pacific Drosophila Research Conference
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ミズタマショウジョウバエの水玉模様が配偶者選択により進化した可能性2020

    • Author(s)
      丹伊田拓磨, 越川滋行
    • Organizer
      第64回日本応用動物昆虫学会大会(みなし開催)
    • Related Report
      2019 Annual Research Report
  • [Presentation] Enhancer function and evolution of polka-dots in Drosophila guttifera2019

    • Author(s)
      Shigeyuki Koshikawa, Yuichi Fukutomi
    • Organizer
      日本発生生物学会第52回大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] ミズタマショウジョウバエの模様で発現する遺伝子の解明のためのトランスクリプトーム解析2019

    • Author(s)
      福冨雄一, 重信秀治, 越川滋行
    • Organizer
      日本発生生物学会 第52回大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 模様形成遺伝子の探索 ~ミズタマショウジョウバエのトランスクリプトーム解析~2019

    • Author(s)
      福冨雄一, 重信秀治, 越川滋行
    • Organizer
      日本進化学会 第21回 北海道大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] ミズタマショウジョウバエの模様が作られる仕組み2019

    • Author(s)
      越川滋行, 福冨雄一, 松本圭司
    • Organizer
      日本動物学会第90回大会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] ミズタマショウジョウバエの模様はどのように作られるのか?2018

    • Author(s)
      越川滋行、福冨雄一、松本圭司
    • Organizer
      日本動物学会第89回大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Generation mechanism of a polka-dot pattern in Drosophila guttifera.2018

    • Author(s)
      越川滋行、松本圭司、福冨雄一
    • Organizer
      第46回内藤コンファレンス
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Book] Pigments, Pigment Cells and Pigment Patterns2021

    • Author(s)
      Hisashi Hashimoto, Makoto Goda, Ryo Futahashi, Robert Kelsh, Toyoko Akiyama (eds.) Yuichi Fukutomi and Shigeyuki Koshikawa (第12章を担当)
    • Total Pages
      472
    • Publisher
      Springer
    • ISBN
      9789811614897
    • Related Report
      2021 Annual Research Report

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Published: 2018-04-23   Modified: 2024-01-30  

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