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Development of the artificial oligonucleotides for the RNA pinpoint modification and the application to RNA editing

Research Project

Project/Area Number 18H02558
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 47010:Pharmaceutical chemistry and drug development sciences-related
Research InstitutionNagasaki International University (2020)
Kyushu University (2018-2019)

Principal Investigator

Sasaki Shigeki  長崎国際大学, 薬学部, 教授 (10170672)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥17,290,000 (Direct Cost: ¥13,300,000、Indirect Cost: ¥3,990,000)
Fiscal Year 2020: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2019: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Fiscal Year 2018: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Keywords核酸化学 / RNA / 化学修飾 / 翻訳 / ペプチド / 変異 / 編集 / 化学反応性人工核酸 / RNA化学修飾 / リードスルー / 非細胞翻訳 / RNA編集
Outline of Final Research Achievements

Deamination of mRNA bases has been known for a long time as an editing reaction. Chemical modifications such as methylation have recently been revealed to play important roles in regulation of translation. We have succeeded in developing chemically reactive artificial nucleic acids that induce functional group transfer by forming hybrid complexes with RNA, resulting in site-specific and base-specific chemical modifications. In this study, we used this reaction to chemically modify mRNA in a site-specific manner in order to realize the editing function. The results of this research will lead to the creation of new nucleic acid drugs with editing functions targeting mRNA.

Academic Significance and Societal Importance of the Research Achievements

ナンセンス変異は未熟終止コドンを生じ、正常よりも短いペプチド産生の原因となる。このような変異はデュシェンヌ型筋ジストロフィーなど遺伝性希少疾患に見られるが、治療法は確立していない。最近、RNAの未熟終止コドンを標的とする人工核酸を用いた先進的な創薬が実用化され、注目されている。人工核酸以外の方法も検討されており、未熟終止コドンをリードスルーする低分子化合物が開発されているが、未熟終止コドンと正常の終止コドンの識別などが課題になっている。本研究は、mRNAを部位特異的に化学修飾する技術を展開し、未熟終止コドン選択的なリードスルー活性をもつ核酸医薬開発の基盤となるものである。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (49 results)

All 2021 2020 2019 2018 Other

All Journal Article (10 results) (of which Peer Reviewed: 9 results,  Open Access: 1 results) Presentation (35 results) (of which Int'l Joint Research: 9 results,  Invited: 7 results) Book (1 results) Remarks (1 results) Patent(Industrial Property Rights) (2 results) (of which Overseas: 1 results)

  • [Journal Article] Development of MTH1-Binding Nucleotide Analogs Based on 7,8-Dihalogenated 7-Deaza-dG Derivatives2021

    • Author(s)
      Shi Hui、Ishikawa Ren、Heh Choon Han、Sasaki Shigeki、Taniguchi Yosuke
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 22 Issue: 3 Pages: 1274-1274

    • DOI

      10.3390/ijms22031274

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Artificial Host Molecules to Covalently Capture 8-Nitro-cGMP in Neutral Aqueous Solutions and in Cells2021

    • Author(s)
      Y. Fuchi, H. Murase, R. Kai, K. Kurata, S. Karasawa, and S. Sasaki*
    • Journal Title

      Bioconjugate Chem

      Volume: 32 Issue: 2 Pages: 385-393

    • DOI

      10.1021/acs.bioconjchem.1c00012

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Synthesis of Nucleoside Derivatives of <i>N</i>-Acetyl-7-nitroindoline, Their Incorporation into the DNA Oligomer, and Evaluation of Their Photoreactivity in the DNA/RNA Duplex2020

    • Author(s)
      Kikuta Kenji、Barta Jan、Taniguchi Yosuke、Sasaki Shigeki
    • Journal Title

      Chemical and Pharmaceutical Bulletin

      Volume: 68 Issue: 12 Pages: 1210-1219

    • DOI

      10.1248/cpb.c20-00594

    • NAID

      130007948430

    • ISSN
      0009-2363, 1347-5223
    • Year and Date
      2020-12-01
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of novel C-nucleoside analogues for the formation of antiparallel-type triplex DNA with duplex DNA that includes TA and dUA base pairs2020

    • Author(s)
      Taniguchi Yosuke、Magata Yuya、Osuki Takayuki、Notomi Ryotaro、Wang Lei、Okamura Hidenori、Sasaki Shigeki
    • Journal Title

      Organic & Biomolecular Chemistry

      Volume: 18 Issue: 15 Pages: 2845-2851

    • DOI

      10.1039/d0ob00420k

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Enhancements in the utilization of antigene oligonucleotides in the nucleus by booster oligonucleotides2020

    • Author(s)
      Wang Lei、Okamura Hidenori、Sasaki Shigeki、Taniguchi Yosuke
    • Journal Title

      Chemical Communications

      Volume: 56 Issue: 67 Pages: 9731-9734

    • DOI

      10.1039/d0cc04240d

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Protection of all cleavable sites of DNA with the multiple CGCG or continuous CGG sites from the restriction enzyme, indicative of simultaneous binding of small ligands2020

    • Author(s)
      Murase Hirotaka、Wakisaka Gentaro、Noguchi Tomoharu、Sasaki Shigeki
    • Journal Title

      Bioorganic & Medicinal Chemistry

      Volume: 28 Issue: 20 Pages: 115730-115730

    • DOI

      10.1016/j.bmc.2020.115730

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Synthesis of C-nucleoside analogues based on the pyrimidine skeleton for the formation of anti-parallel-type triplex DNA with a CG mismatch site2020

    • Author(s)
      Notomi Ryotaro、Wang Lei、Osuki Takayuki、Okamura Hidenori、Sasaki Shigeki、Taniguchi Yosuke
    • Journal Title

      Bioorganic & Medicinal Chemistry

      Volume: 28 Issue: 23 Pages: 115782-115782

    • DOI

      10.1016/j.bmc.2020.115782

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Study of the Inducible Cross-Linking Reaction to mRNA and the Effect on the Translation2019

    • Author(s)
      Kenji Kikuta, Yosuke Taniguchi, Shigeki Sasaki
    • Journal Title

      Chemical and Pharmaceutical Bulletin

      Volume: 67 Issue: 8 Pages: 877-883

    • DOI

      10.1248/cpb.c19-00337

    • NAID

      130007686359

    • ISSN
      0009-2363, 1347-5223
    • Year and Date
      2019-08-01
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evaluation of simultaneous binding of Chromomycin A3 to the multiple sites of DNA by the new restriction enzyme assay2018

    • Author(s)
      Hirotaka Murase, Tomoharu Noguchi, Shigeki Sasaki
    • Journal Title

      Bioorg. Med. Chem. Lett

      Volume: 28 Issue: 10 Pages: 1832-1835

    • DOI

      10.1016/j.bmcl.2018.04.013

    • Related Report
      2018 Annual Research Report
  • [Journal Article] Luminescent europium sensors for specific detection of 8-oxo-dGTP by time-gated fluorescence2018

    • Author(s)
      Fuchi Yasufumi、Fukuda Takashi、Sasaki Shigeki
    • Journal Title

      Bioorganic & Medicinal Chemistry

      Volume: 印刷中 Issue: 12 Pages: 3254-3260

    • DOI

      10.1016/j.bmc.2018.04.052

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Presentation] RNAの高次構造変化を誘起する新規低分子リガンドの開発2021

    • Author(s)
      村瀬 裕貴、永次 史、佐々木 茂貴
    • Organizer
      日本薬学会第141年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 官能基転移人工核酸によるmRNA部位特異的修飾と翻訳への効果の検討2021

    • Author(s)
      都甲 典宏、菊田 健司、村瀬 裕貴、谷口 陽祐、佐々木 茂貴
    • Organizer
      日本薬学会第141年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 三本鎖DNA形成領域拡張のための5mCG塩基対認識人工核酸の開発2021

    • Author(s)
      納富 亮大朗、王 磊、佐々木 茂貴、谷口 陽祐
    • Organizer
      日本薬学会第141年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 8-オキソグアノシンのDNA配列中位置検出を目指したデアザプリン人工ヌクレオチドの開発と評価2021

    • Author(s)
      長田 悠佑、相良 委公子、佐々木 茂貴、谷口 陽祐
    • Organizer
      日本薬学会第141年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 酸化損傷塩基の認識能向上を目指したピリミジン骨格を有する人工ヌクレオチドの開発2021

    • Author(s)
      桜田 喬登、長田 悠佑、佐々木 茂貴、谷口 陽祐
    • Organizer
      日本薬学会第141年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] γ位修飾8-oxo-dGTPによる酸化損傷修復酵素活性検出法の開発2021

    • Author(s)
      丸山 健登、石川 廉、石 卉、佐々木 茂貴、谷口 陽祐
    • Organizer
      日本薬学会第141年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] CG塩基対とアンチパラレル型三本鎖DNAを形成するC-ヌクレオシドアナログの開発2020

    • Author(s)
      (1)納富亮太朗、王磊、佐々木茂貴、谷口陽祐
    • Organizer
      日本化学会九州支部秋期研究発表会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 遺伝子を標的とした人工核酸搭載核酸医薬の新展開2020

    • Author(s)
      (2)谷口 陽祐、佐々木茂貴
    • Organizer
      第69回高分子討論会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 反応性核酸を用いた環境応答型solvatochromic蛍光分子の蛋白質への導入と修飾蛋白質の評価2020

    • Author(s)
      (3)麻生真理子・金城綾香・田畑香織・阿部由紀子・谷口陽祐・佐々木茂貴
    • Organizer
      第14回バイオ関連化学シンポジウム2020
    • Related Report
      2020 Annual Research Report
  • [Presentation] リピートDNA配列中の複数連続する結合サイトに協奏的に全サイト結合する低分子リガンドの開2020

    • Author(s)
      (4)村瀬裕貴、脇坂元太郎、野口幹晴、Ting Wu、佐々木茂貴
    • Organizer
      反応と合成の進歩2020特別企画シンポジウム
    • Related Report
      2020 Annual Research Report
  • [Presentation] 中性水溶液中で8-nitro-cGMPを効率的に捕捉する_人工ホスト分子の開発2020

    • Author(s)
      (5)渕靖史、甲斐亮補、倉田翔、唐澤悟、佐々木茂貴
    • Organizer
      反応と合成の進歩2020特別企画シンポジウム
    • Related Report
      2020 Annual Research Report
  • [Presentation] 反応性人工核酸を用いた効率的なRNA糖部2'OH基選択的アセチル化2020

    • Author(s)
      宮本 奈津、阿部 由紀子、北﨑 健太郎、高崎 隼颯、谷口 陽祐、佐々木 茂貴
    • Organizer
      日本本薬学会第140年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 官能基転移人工核酸によるmRNA部位特異的修飾と翻訳への効果の検討2019

    • Author(s)
      菊田 健司、都甲 典宏、大城 郁也、原田 額郎、谷口 陽祐、佐々木 茂貴
    • Organizer
      第36回日本薬学会九州支部大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] チオグアニン-ポリアミン結合体を基にしたAPサイト修復阻害剤の開発2019

    • Author(s)
      阿部 由紀子、佐々木茂貴
    • Organizer
      第36回日本薬学会九州支部大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Site-specific and efficient acetylation of the 2'-OH of RNA by the reactive oligonucleotide2019

    • Author(s)
      Natsu Miyamoto, Kentaro Kitazaki, Hayate Takasaki, Yosuke Taniguchi, Shigeki Sasaki
    • Organizer
      第46回国際核酸化学シンポジウム(ISNAC2019)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 人工核酸による効率的なRNA糖部2’OH選択的アセチル化2019

    • Author(s)
      宮本奈津、北﨑健太郎、高崎隼颯、谷口陽祐、佐々木茂貴
    • Organizer
      第56回化学関連支部合同九州大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Inducible cross-linking reaction of the oligonucleotide containing the 4-vinylpyrimidin-2-one nucleoside to mRNA and the effect on the translation2019

    • Author(s)
      Kenji KIkuta, Yosuke Taniguchi, Shigeki Sasaki
    • Organizer
      日本核酸医薬学会第5回年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Pin-point Chemical Modification of mRNA and its Effect on the Translation2019

    • Author(s)
      Gakuro Harada, Kenji Kikuta, Yosuke Taniguchi and Shigeki Sasaki
    • Organizer
      The 27th French-Japanese Symposium on Medicinal and Fine CHemistry
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] DNAとRNAを標的にする新しい核酸創薬アプローチ2019

    • Author(s)
      佐々木茂貴
    • Organizer
      第37回メディシナルケミストリーシンポジウム
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Chemical Reaction for site-selective modification of RNA and its application to the biological system2019

    • Author(s)
      Shigeki Sasaki
    • Organizer
      8th Japanese-Sino Symposium on Organic Chemistry for Young Scientists
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Site-selective modification of mRNA and its effect on the translation2019

    • Author(s)
      Shigeki Sasaki
    • Organizer
      CISNAC2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] RNA部位特異的化学反応 核酸医薬動態把握技術への展開2019

    • Author(s)
      佐々木茂貴
    • Organizer
      日本核酸医薬学会第5回年会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] DNA/RNAを標的にした選択的認識と効率的反応の研究2019

    • Author(s)
      佐々木茂貴
    • Organizer
      有機合成化学協会九州山口支部講演会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 反応性人工核酸による中性水溶液中での選択的RNA2'OHアセチル化2019

    • Author(s)
      北﨑 健太郎、宮本 奈津、高崎 隼颯、谷口 陽祐、佐々木 茂貴
    • Organizer
      日本薬学会第139回年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Synthesisand Evaluation of Photoactive Nucleic Acid Analogues for RNA Acetylation2018

    • Author(s)
      Kenji Kikuta, Jan Barta, Yosuke Taniguchi, Shigeki Sasaki
    • Organizer
      第45回国際核酸化学シンポジウム
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 触媒基を搭載した人工核酸による配列特異的なRNA糖部2'OHアセチル化2018

    • Author(s)
      北﨑健太郎、高崎隼颯、谷口陽祐、佐々木茂貴
    • Organizer
      第44回反応と合成の進歩シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] 水中で8-nitro-cGMPを共有結合捕捉する1,3-ジアザフェノキサジン骨格をもつ分子プローブの開発2018

    • Author(s)
      甲斐亮補、渕靖史、佐々木茂貴
    • Organizer
      第44回反応と合成の進歩シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] Oligonucleotide tools for the site-specific modification of mRNA and application to regulation of translation2018

    • Author(s)
      Shigeki Sasaki
    • Organizer
      第13 回日仏DDS シンポジウム
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Attempt to Design Small Molecular Ligands to Assemble on the Duplex DNA with the Multiple Binding Sites Based on the BindingMode of Chromomycin A32018

    • Author(s)
      Shigeki Sasaki
    • Organizer
      Asian 3 Roundtable on Nucleic Acids A3RONA 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Intra-strand Cross-link Promotes Formation of i-motif structures2018

    • Author(s)
      Kenji KIkuta, Piao Haishun, John Brazier Kazumitsu Onizuka, Fumi Nagatsugi, Yosuke Taniguchi, Shigeki Sasaki
    • Organizer
      XXIII International Roundtable on Nucleosides, Nucleotides and Nucleic Acids
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Application of the Functionality Transfer Oligonucleotide for the Site-Selective Internal Labeling of RNA2018

    • Author(s)
      Shigeki Sasaki, Ikuya Oshiro, Takuya, Matsumoto, Gakuro Harada, Yosuke Taniguchi
    • Organizer
      XXIII International Roundtable on Nucleosides, Nucleotides and Nucleic Acids
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 人工核酸塩基を用いたRNAの光アセチル化反応の検討2018

    • Author(s)
      菊田健司、Jan Barta 、谷口陽祐、佐々木茂貴
    • Organizer
      第4回日本核酸医薬学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 官能基転移反応による翻訳系に対する影響評価法の確立2018

    • Author(s)
      原田額郎、大城郁也、菊田健司、谷口陽祐、佐々木茂貴
    • Organizer
      第4回日本核酸医薬学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 人工核酸塩基によるRNAの光アセチル化反応の検討2018

    • Author(s)
      菊田健司、Jan BARTA、谷口陽祐、佐々木茂貴
    • Organizer
      日本ケミカルバイオロジー学会第13回年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 水中で8-nitoro-cGMPを共有結合捕捉するジアザフェノキサジン誘導体の開発2018

    • Author(s)
      渕靖史、甲斐亮補、唐澤悟、佐々木茂貴
    • Organizer
      日本ケミカルバイオロジー学会第13回年会
    • Related Report
      2018 Annual Research Report
  • [Book] 核酸科学ハンドブック2020

    • Author(s)
      日本核酸化学会、杉本 直己
    • Total Pages
      576
    • Publisher
      講談社
    • ISBN
      9784065207864
    • Related Report
      2020 Annual Research Report
  • [Remarks] Bioorganic and Synthetic Chemistry

    • URL

      http://bioorg.phar.kyushu-u.ac.jp/index.html

    • Related Report
      2018 Annual Research Report
  • [Patent(Industrial Property Rights)] 核酸の標識方法2019

    • Inventor(s)
      佐々木茂貴,原田額郎,谷口陽祐
    • Industrial Property Rights Holder
      国立大学法人九州大学, 株式会社久留米リサーチ・パーク
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2019-065888
    • Filing Date
      2019
    • Related Report
      2019 Annual Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] 核酸の標識方法2019

    • Inventor(s)
      佐々木茂貴、谷口陽祐、原田額郎
    • Industrial Property Rights Holder
      佐々木茂貴、谷口陽祐、原田額郎
    • Industrial Property Rights Type
      特許
    • Filing Date
      2019
    • Related Report
      2018 Annual Research Report

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Published: 2018-04-23   Modified: 2022-01-27  

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