• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Biosynthetic gene cluster of bioactive natural products from marine invertebrates

Research Project

Project/Area Number 18H02581
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 47050:Environmental and natural pharmaceutical resources-related
Research InstitutionHokkaido University

Principal Investigator

WAKIMOTO Toshiyuki  北海道大学, 薬学研究院, 教授 (70363900)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥17,290,000 (Direct Cost: ¥13,300,000、Indirect Cost: ¥3,990,000)
Fiscal Year 2020: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2019: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2018: ¥6,890,000 (Direct Cost: ¥5,300,000、Indirect Cost: ¥1,590,000)
Keywords生合成 / 遺伝子クラスター / 海洋無脊椎動物 / 海綿 / メタゲノム / フラン脂肪酸 / 共生微生物 / spongistatin / 海綿動物 / 生理活性物質 / trans-AT PKS / 細胞毒性物質 / 生合成遺伝子
Outline of Final Research Achievements

Marine sponges are sessile animals harboring vast array of symbiont microorganisms. They inhabit in global oceans and the number of species are estimated to be 10,000. More than 20,000 bioactive natural products have been isolated from the marine sponges thus far. The search based on the randam screening is so common that cytotoxic compounds has been dominated and some of them exhibit significantly potent cytotoxicity with pM range of concentration. However, due to the scarcity and highly complex structure, most of them had not been developed to clinically useful anti-cancer agents. On the other hand, it has been suggested that many sponge-derived cytotoxins are produced by symbiont bacteria. In this study, we implanted the search for biosynthetic gene cluster of sponge-derived bioactive molecules and detailed analysis of biosynthetic pathway, and identification of producer symbiont.

Academic Significance and Societal Importance of the Research Achievements

二次代謝産物生合成遺伝子は生合成経路の詳細にとどまらず、生物活性天然物の起源や分布を高感度に解析するための重要な研究ツールである。さらに近年では、希少生物資源に依存しない合成生物学的な物質生産系の構築が可能になりつつあり、生合成遺伝子の有用性がさらに高まっている。特に海洋生物にはアクセスや栽培、培養が困難な生物資源が多いため、海洋天然物を基にした医薬品開発において、生合成遺伝子取得の意義は極めて高い。稀少かつ医薬品資源として有望な海洋無脊椎動物由来生理活性物質の生合成遺伝子および生産菌を同定し、可培養化や異種生産を目指した基礎的知見を得ることができる。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (39 results)

All 2021 2020 2019 2018 Other

All Journal Article (19 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 18 results,  Open Access: 3 results) Presentation (13 results) (of which Int'l Joint Research: 4 results,  Invited: 13 results) Book (2 results) Remarks (3 results) Patent(Industrial Property Rights) (2 results) (of which Overseas: 2 results)

  • [Journal Article] PenA, a penicillin-binding protein-type thioesterase specialized for small peptide cyclization2021

    • Author(s)
      Matsuda Kenichi、Fujita Kei、Wakimoto Toshiyuki
    • Journal Title

      Journal of Industrial Microbiology and Biotechnology

      Volume: kuab023 Issue: 3-4

    • DOI

      10.1093/jimb/kuab023

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Ascidian-associated photosymbionts originated from Manado, Indonesia: Secondary metabolite identification, bioactivity simulation, and biosynthetic insight2021

    • Author(s)
      Rumengan Inneke F.M.、 Roring Vera I.Y.、Haedar Jabal R.、 Siby Mayse S.、Luntungan Aldian H.、Kolondam Beivy J.、Uria Agustinus R.、Wakimoto Toshiyuki
    • Journal Title

      Symbiosis

      Volume: - Issue: 1 Pages: 71-82

    • DOI

      10.1007/s13199-021-00766-4

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] 新規ペプチド環化酵素PBP-type TEの発見と機能解析2021

    • Author(s)
      松田研一、脇本敏幸
    • Journal Title

      ファインケミカル

      Volume: -

    • Related Report
      2020 Annual Research Report
  • [Journal Article] Total Synthesis and Structural Revision of Kasumigamide, and Identification of a New Analogue2020

    • Author(s)
      Kuranaga Takefumi、Matsuda Kenichi、Takaoka Masachika、Tachikawa Chisato、Sano Ayae、Itoh Kosei、Enomoto Ayumu、Fujita Kei、Abe Ikuro、Wakimoto Toshiyuki
    • Journal Title

      ChemBioChem

      Volume: 21 Issue: 23 Pages: 3329-3332

    • DOI

      10.1002/cbic.202000409

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Polyketides Biosynthesis in Marine Sponges of the Family Theonellidae2020

    • Author(s)
      Uria Agustinus R.、Wakimoto Toshiyuki
    • Journal Title

      Topics in Heterocyclic Chemistry

      Volume: - Pages: 1-25

    • DOI

      10.1007/7081_2020_48

    • ISBN
      9789811646362, 9789811646379
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Heterochiral coupling in non-ribosomal peptide macrolactamization2020

    • Author(s)
      Matsuda Kenichi、Zhai Rui、Mori Takahiro、Kobayashi Masakazu、Sano Ayae、Abe Ikuro、Wakimoto Toshiyuki
    • Journal Title

      Nature Catalysis

      Volume: 3 Issue: 6 Pages: 507-515

    • DOI

      10.1038/s41929-020-0456-7

    • NAID

      120006941707

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A New Cyclase Family Catalyzing Head-to-Tail Macrolactamization of Non-ribosomal Peptides2019

    • Author(s)
      Matsuda Kenichi、Kuranaga Takefumi、Wakimoto Toshiyuki
    • Journal Title

      Journal of Synthetic Organic Chemistry, Japan

      Volume: 77 Issue: 11 Pages: 1106-1115

    • DOI

      10.5059/yukigoseikyokaishi.77.1106

    • NAID

      130007742538

    • ISSN
      0037-9980, 1883-6526
    • Year and Date
      2019-11-01
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal Structures of Flavone <i>C</i>-Glycosides from Oolong Tea Leaves: Chafuroside A Dihydrate and Chafuroside B Monohydrate2019

    • Author(s)
      Iwao Yasunori、 Ishida Hitoshi、Kimura Shin-ichiro、Wakimoto Toshiyuki、Kondo Hiromu、Itai Shigeru、Noguchi Shuji
    • Journal Title

      Chemical and Pharmaceutical Bulletin

      Volume: 67 Issue: 9 Pages: 935-939

    • DOI

      10.1248/cpb.c19-00166

    • NAID

      130007699653

    • ISSN
      0009-2363, 1347-5223
    • Year and Date
      2019-09-01
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Revised Structure of the Cyclic Octapeptide Surugamide A2019

    • Author(s)
      Matsuda Kenichi、Kuranaga Takefumi、Sano Ayae、Ninomiya Akihiro、Takada Kentaro、Wakimoto Toshiyuki
    • Journal Title

      Chemical and Pharmaceutical Bulletin

      Volume: 67 Issue: 5 Pages: 476-480

    • DOI

      10.1248/cpb.c19-00002

    • NAID

      130007641158

    • ISSN
      0009-2363, 1347-5223
    • Year and Date
      2019-05-01
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Scrobiculosides A and B from the deep-sea sponge Pachastrella scrobiculosa2019

    • Author(s)
      Jomori Takahiro、Ise Yuji、Kohtsuka Hisanori、Matsuda Kenichi、Kuranaga Takefumi、Wakimoto Toshiyuki
    • Journal Title

      Journal of Natural Medicine

      Volume: 73 Issue: 4 Pages: 1058-1061

    • DOI

      10.1007/s11418-019-01315-6

    • NAID

      40021995195

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ペニシリン結合タンパク質によるペプチド環化2019

    • Author(s)
      松田 研一、倉永 健史、脇本 敏幸
    • Journal Title

      Farumashia

      Volume: 55 Issue: 7 Pages: 650-654

    • DOI

      10.14894/faruawpsj.55.7_650

    • NAID

      130007671605

    • ISSN
      0014-8601, 2189-7026
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] バクテリアが有する新たな非リボソームペプチド環化酵素2019

    • Author(s)
      松田研一、脇本敏幸
    • Journal Title

      バイオサイエンスとインダストリー

      Volume: 77 Pages: 306-307

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] SurE is a trans-acting thioesterase cyclizing two distinct non-ribosomal peptides2019

    • Author(s)
      Matsuda, K., Kobayashi, M., Kuranaga, T., Takagda, K., Ikeda, H., Matsunaga, S., Wakimoto, T.,
    • Journal Title

      Org. Biomol. Chem.

      Volume: 17 Issue: 5 Pages: 1058-1061

    • DOI

      10.1039/c8ob02867b

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The revised structure of surugamide A2019

    • Author(s)
      Matsuda Kenichi、Kuranaga Takefumi、Ayae Sano, Akihiro Ninomiya、Takada Kentaros、Wakimoto Toshiyuki
    • Journal Title

      Chemical and Pharmaceutical Bulletin

      Volume: ー

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Diastereoselective Total Synthesis and Structural Confirmation of Surugamide F2018

    • Author(s)
      Kuranaga Takefumi、Fukuba Atsuki、Ninomiya Akihiro、Takada Kentaro、Matsunaga Shigeki、Wakimoto Toshiyuki
    • Journal Title

      Chemical and Pharmaceutical Bulletin

      Volume: 66 Issue: 6 Pages: 637-641

    • DOI

      10.1248/cpb.c18-00072

    • NAID

      130007382323

    • ISSN
      0009-2363, 1347-5223
    • Year and Date
      2018-06-01
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biosynthetic Insights of Calyculin- and Misakinolide-Type Compounds in “ Candidatus Entotheonella sp.”2018

    • Author(s)
      Uria Agustinus R.、Piel Joern、Wakimoto Toshiyuki
    • Journal Title

      Methods in Enzymology

      Volume: 604 Pages: 287-330

    • DOI

      10.1016/bs.mie.2018.02.017

    • ISBN
      9780128139592
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Discovery of Unprecedented Hydrazine-Forming Machinery in Bacteria2018

    • Author(s)
      Matsuda Kenichi、Tomita Takeo、Shin-ya Kazuo、Wakimoto Toshiyuki、Kuzuyama Tomohisa、Nishiyama Makoto
    • Journal Title

      Journal of the American Chemical Society

      Volume: 140 Issue: 29 Pages: 9083-9086

    • DOI

      10.1021/jacs.8b05354

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Total Synthesis of the Nonribosomal Peptide Surugamide?B and Identification of a New Offloading Cyclase Family2018

    • Author(s)
      Kuranaga Takefumi、Matsuda Kenichi、Sano Ayae、Kobayashi Masakazu、Ninomiya Akihiro、Takada Kentaro、Matsunaga Shigeki、Wakimoto Toshiyuki
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 57 Issue: 30 Pages: 9447-9451

    • DOI

      10.1002/anie.201805541

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Palmitoyl lactic acid induces adipogenesis and a brown fat-like phenotype in 3T3-L1 preadipocytes2018

    • Author(s)
      Uno Yuka、Yamamoto Hirona、Shuto Takatsuki、Sato Yoshinori、Kuranaga Takefumi、Yazawa Kazunaga、Ono Yasuo、Wakimoto Toshiyuki
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids

      Volume: 1863 Issue: 7 Pages: 772

    • DOI

      10.1016/j.bbalip.2018.04.003

    • URL

      https://pure.teikyo.jp/en/publications/5b4a27fb-553a-4bf7-9d77-0ee22131e3b9

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Presentation] Discovery and functional analysis of a new peptide cyclase, PBP-type TE2021

    • Author(s)
      Wakimoto Toshiyuki
    • Organizer
      1st GSD/GI-CoRE国際シンポジウム
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 新規ペプチド環化酵素PBP-type TEの機能解析2021

    • Author(s)
      脇本敏幸
    • Organizer
      日本農芸化学会2021大会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 海洋生物活性天然物の生合成に関する研究2021

    • Author(s)
      脇本敏幸
    • Organizer
      日本薬学会第141年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] A new off-loading cyclase in non-ribosomal peptide biosynthesis2020

    • Author(s)
      Wakimoto Toshiyuki
    • Organizer
      3rd International Conference on Natural Product Discovery and Development in the Genomic Era
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] カリクリン生合成過程に内在する活性制御機構2020

    • Author(s)
      脇本敏幸
    • Organizer
      日本農芸化学会2020年度大会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 非リボソームペプチド新規環化酵素の発見2019

    • Author(s)
      脇本敏幸
    • Organizer
      第51回若手ペプチド夏の勉強会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 難培養微生物を起源とする希少医薬品資源の量産2019

    • Author(s)
      脇本敏幸
    • Organizer
      生物合成系の再設計による複雑骨格機能分子の革新的創成科学、第6回公開シンポジウム
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Chemical defense mechanism in a Japanese marine sponge, Discodermia calyx2019

    • Author(s)
      Wakimoto Toshiyuki
    • Organizer
      Blue Pharmacy: from Sources to Clinical Reality
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] A new off-loading enzyme in non-ribosomal peptide biosynthesis2018

    • Author(s)
      Toshiyuki Wakimoto
    • Organizer
      2nd China-Japan Joint Symposium on Natural Product Biosynthesis
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Marine Sponge-derived Metagenomes/uncultured Bacteria - a Rich Source of Novel Natural Product Biosynthetic Genes2018

    • Author(s)
      Toshiyuki Wakimoto
    • Organizer
      International Seminar on Natural Products Medicines 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Unusual Processes of PKS and NRPS Assembly Lines in Marine Bacteria2018

    • Author(s)
      Toshiyuki Wakimoto
    • Organizer
      1st German-Japanese Joint Symposium on the Biosynthesis of Natural Products
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 生合成遺伝子から見出した新規天然物と難培養微生物2018

    • Author(s)
      脇本敏幸
    • Organizer
      新化学技術推進協会ライフサイエンス技術部会講演会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 難培養微生物を起源とする希少医薬品資源の量産2018

    • Author(s)
      脇本敏幸
    • Organizer
      生物合成系の再設計による複雑骨格機能分子の革新的創成科学、第2回公開シンポジウム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Book] パートナー天然物化学(改訂第4版)2021

    • Author(s)
      海老塚 豊、森田 博史、阿部 郁朗、脇本 敏幸、他
    • Total Pages
      306
    • Publisher
      南江堂
    • ISBN
      9784524403325
    • Related Report
      2020 Annual Research Report
  • [Book] パートナー生薬学(改訂第4版)2021

    • Author(s)
      竹谷 孝一、木内 文之、小松 かつ子、脇本 敏幸、他
    • Total Pages
      458
    • Publisher
      南江堂
    • ISBN
      9784524403424
    • Related Report
      2020 Annual Research Report
  • [Remarks] 北海道大学大学院薬学研究院天然物化学研究室

    • URL

      https://www.pharm.hokudai.ac.jp/tennen/index.html

    • Related Report
      2020 Annual Research Report
  • [Remarks] 北海道大学大学院薬学研究院天然物化学研究室

    • URL

      http://www.pharm.hokudai.ac.jp/tennen/index.html

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
  • [Remarks] 北海道大学プレスリリース

    • URL

      https://www.hokudai.ac.jp/news/180618_pr.pdf

    • Related Report
      2018 Annual Research Report
  • [Patent(Industrial Property Rights)] ペプチド類の大環状化酵素2019

    • Inventor(s)
      脇本敏幸、倉永健史、松田研一
    • Industrial Property Rights Holder
      北海道大学
    • Industrial Property Rights Type
      特許
    • Filing Date
      2019
    • Related Report
      2019 Annual Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] ペプチド類の大環状化酵素2018

    • Inventor(s)
      脇本敏幸、倉永健 史、松田研一
    • Industrial Property Rights Holder
      北海道大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2019-050797
    • Filing Date
      2018
    • Related Report
      2018 Annual Research Report
    • Overseas

URL: 

Published: 2018-04-23   Modified: 2022-01-27  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi